FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003625108

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003625108
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences100
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGTGCCCT33.0No Hit
GAGTTTGTCTAATCAAGACTCAAACATTTTGAGTGGATTTTTTTTCCCTC33.0No Hit
AGTATCCCCGAAGATCGCGTTCACCAGCGACGACTTGCCGACGCCGGTGT33.0No Hit
GTACATGGGAAGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAA33.0Clontech Universal Primer Mix Long (95% over 21bp)
GTCTCGATCTCCTCACCTCGTGATCCTCCCATCTCGGCCTCCCAAAAGTG22.0No Hit
ATGGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAAC22.0Clontech SMARTer II A Oligonucleotide (100% over 25bp)
CCCTTCGTCCTGGGAAACGGGGCGCGGCCGGAAAGGCGGCCGCCCCCTCG22.0No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT22.0Clontech Universal Primer Mix Long (96% over 26bp)
AATATATTTGTCCTAGAAAGCTCTAAGGGTGTTGGTTAAATTGCTCGTGA22.0No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA22.0Clontech SMARTer II A Oligonucleotide (100% over 25bp)
TCTTAGGTAAGTCCCCGAGTCTCGCAGCGGCCTTGCTTCTTCACGAGCGC22.0No Hit
CTGATAAGTAGATTCTTGATTAGAACAACATCTTGTTTCTGACTAAAATA22.0No Hit
GCCCGGGCCTGAATTAGGCCCTGGGGGAGGCCTGAAACAGATCAGACTCA22.0No Hit
ACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATC22.0Clontech Universal Primer Mix Long (96% over 26bp)
GTATATCGTCATTCCATCTGCAGCTGGAGCTGGAATCCCATTGATCTTCT22.0No Hit
GTGGTAATTCTAGAGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCG11.0No Hit
CTTGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCA11.0Clontech SMARTer II A Oligonucleotide (100% over 25bp)
TAGTACTAGCAGAAACTTAAACCCTTGAAATTTAACACTTCAGGTTGTTC11.0No Hit
ACATGGGAAGCAGAGCAATCAAACCAGATAACATGGGAAGCAGTCGAATC11.0No Hit
GAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTTGTATCAACGCA11.0Clontech SMARTer II A Oligonucleotide (100% over 25bp)
CAAAGGCCCCTACCACAAAAACAATAGGATCACTGCTGGGCACCAGCTCA11.0No Hit
ATTGGATACTGACATCATTAACAAAAAAAAAAAAAGTAGTGAGGTAAGAT11.0No Hit
GTTCCTAGAGGAATGTTGTTCCAGTACCTATAGCGATTGCAGCCATAACT11.0No Hit
ATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTTGGGAGCGG11.0No Hit
ACCCAGACTTCTGAATTCTCAAACAAAGATGAAAATATGTCCAGTTTGAG11.0No Hit
AACTTAGTTTAACTAACAATGAAAACCTCACCCAAGATCTGCCCATGACA11.0No Hit
CCCCCGAGCGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTC11.0No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTAAGAGGCTTATAG11.0Clontech Universal Primer Mix Long (96% over 26bp)
ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC11.0Clontech Universal Primer Mix Long (96% over 26bp)
CTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCAT11.0No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG11.0Clontech Universal Primer Mix Long (96% over 26bp)
CGCCTGTAGTCCCAGCTACTTGGGAGGCTGAGGTGGGAGAATTGCTCAAA11.0No Hit
GTACAGAAATTATTTTTTTAAATTGTCATATACATAGAACCAGATGCAAC11.0No Hit
CCCTGGGGAACTGGCCAGGACAACTTAAAAAGAAAACTTTAGGATCCTTA11.0No Hit
ACCTCGCACACCACCAGGGAGTCAGACATGATTGTTCTGTCCACAGGCCT11.0No Hit
GGCCAAGGCAGAGATCCATGCCTGCATGACTCAGTGGGTTTGGTGCACAG11.0No Hit
CGGGATAGGTGCCCAGAAGAAAAAAATGTACGCCAATAACGGCGCTATAG11.0No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG11.0No Hit
GACCCGCTCGGCCCCAAAGCCTTTCCGATAGGGTTGTCCATACTATTGGC11.0No Hit
GAATAAAGCCATCCATTTATCAGGGTCCACAATGCCCTTGTCGGCTAAAA11.0No Hit
ATCAAATAGAAGTGCCCACATCTGAATTTGGCATATAAAGCAAGTTTGCA11.0No Hit
TCCTAAGGCGAGCTCAGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGGC11.0No Hit
CTGCAGAAAACACCCGTCCTGTGGCTACCACCAAAATGGCCTTGGGATAG11.0No Hit
AAACAAAAAATGGCTCCTCAAAAAATTGAAAATAAAACTACTATATGATT11.0No Hit
ATCCTGTCCGTGTCCGGGCCGGGTGAGGTTTCCCGTGTTGGGTCAAATTA11.0No Hit
GGTATCAACGCAGAGTACATGGGTACCTGGTTGATCCTGCCAGTAGCATA11.0No Hit
TCACAGAATTAGAAAAAACAATTCTAAAATTCATACAGAACCAAAAGAGA11.0No Hit
GAAACCTCCCGTGGAGCAGAAGGGCAAAAGCTCGCTTGATCTTGATTTTC11.0No Hit
ATGAAAAACATGTTCCAAAATGAAAATGACTCATGGAGGAGTTATCTTTT11.0No Hit
CGCGGGGGGGATGCGTGCATTTATCAGATCAAAACCAACCCGGTCAGCCC11.0No Hit
GTGTTAAGTTTTTATCAGCTTAAAAATAATGGGTTATAAAATAGTATTTG11.0No Hit
GAGCCTTGCTCTGTTGCCCAGGGGGGGTGCAGTGGTGCCATCGCAGCTCA11.0No Hit
GGACAGGGTGCGAGAGCGGGACCGGTTGCCATCAACGGATGCTGCACTGG11.0No Hit
CCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTC11.0Clontech Universal Primer Mix Long (96% over 26bp)
GGAGCTCCAGCTGGCATCTGGCAGGTGCCCCTCTGAGACGAAGCTTACAG11.0No Hit
ATCAAGCAGAGTACAGGGGAAGCAGTGGTATCAACGCAGAGTACATGGGA11.0Clontech Universal Primer Mix Long (96% over 28bp)
GAGCTAGAGTGTGCCCTTCAGATGAGCCTGTGGAATCACAGAATCCAGAC11.0No Hit
GTTTGAGACCAGGCTGGGCAACAAAGCGAGACCCCCATCACTAAATAAAA11.0No Hit
TGCCTGTAATCTCAGCACTTTGGGAGGCTGAGGCAGTCAGATCGCTTGAG11.0No Hit
ATCCTACACTCCAACTCATGAGACCCACAACAAATAGCCCCTGTCTCTTA11.0No Hit
GTGAACAGGCAACCTACAACATGGGAGAAAATTTTCGCAACCTACTCATC11.0No Hit
ATAGAACCGCGGTCCTATTCCATTATTCCTAGCTGCGGTATCCAGGCGGC11.0No Hit
GCTCACTGCGTCCTTGAGCTCCTCGGCTCAAGTGATCCTTCCACCTCGGC11.0No Hit
GACTCAGGACTCTTTCATTCTTCTCGTTCAGGACGTGCTTGGCACTCCTG11.0No Hit
GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT11.0Clontech SMARTer II A Oligonucleotide (100% over 25bp)
CCCTACTTTCCATACACCCTAGGCAGCTCAGCAATCCGGCCCGCTGGCGC11.0No Hit
CTGTAATTGGAATGAGTCCACTTTAAATCCTTTAACGAGGATCCATTGGA11.0No Hit
CCAACTGGCTGCGCGCCTCGCCGGGCGACATCGCCAGCACTTCGCTTACC11.0No Hit
TCCTTAAGGAAGGAATTAAGAAAAGGGAAAAAGCTGGACTCAAGCCACGC11.0No Hit
TTCAGGCCCATGTTGGAAAGGGAAATATCTTCCCGTAACAACTAGGCAGA11.0No Hit
GCCCAGGCTGATCTTGAACTCCTGAGCTCAACTGATCCTATAGCCTCAGC11.0No Hit
GTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG11.0Clontech SMART CDS Primer II A (100% over 21bp)
TTGGAGAAAAAGGCAGTTCCGTTGATTTTTGCAGTGAACTGCTTAGCTCT11.0No Hit
GCTTGTCACACAGGCTCAACTTGAGGCTGCAGCACACTCAGCTGTCACAG11.0No Hit
TATCAGAGAAGCCTTTGTTGTTTAATGGACTTAACTCCATTGATTCTCCA11.0No Hit
CTCTAGATAACCTCGGGCCGATCGCACGCCCCCCGTGGCGGCGACGACCC11.0No Hit
GGCGGGCGGTCCGCCGCGAGGCGAGCCACCGCCCGTCCCCGCCCCTTGCC11.0No Hit
GTACATGGGAAGCAGTGGTATCAACGAAAAAAAAAAAAAAAATAAAAAAA11.0No Hit
GAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACC11.0No Hit
GGGAATCAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACA11.0No Hit
GTGAGATGGACTCTGTTTTCTGCTGCTGGCTTTGAAGATAGAAGGGGCCA11.0No Hit

[WARN]Adapter Content

Adapter graph