FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003625185

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003625185
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences77
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCAGGTTCAAGCCATCCTTCCACCTCAGCCTCCCAAGTAGCTGGGAGTA45.194805194805195No Hit
GTAAACAGGCGGGGTAAGATTTGCCGAGTTCCTTTTACTTTTTTTTAACC22.5974025974025974No Hit
TGACCCATCCGGCGATGGCCGGGTGGATGAGCGGCCCGCCCGCCGACAGG22.5974025974025974No Hit
GACTCAGAGAGGACCCCCAGAGGGTGTCTCCATCTTCCCTATTTATTTTC22.5974025974025974No Hit
GGGCGGCGAAGGCTTCGCGCAGGTCCATGTCGACGTCGACAACAGCTGCA22.5974025974025974No Hit
AAGTGGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAATAGGA22.5974025974025974No Hit
GGTAAAATAAGAATTCGGTTATTGAACGGGCAGGCAGTTTATGCTCATCA22.5974025974025974No Hit
GGGCAAGGCCTCAGCCATACTCCTGGGCGCGGGTTTCGGTGAGCAAGGCA22.5974025974025974No Hit
ATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAAT22.5974025974025974No Hit
CAGGGCTATTGGTTGAATGAGTAGGCTGATGGTTTCGATAATAACTAGTA22.5974025974025974No Hit
TGCCACCCCTCTTCCTGTCACCGACGCTTCCTCAGTGTCCACAGGTCACG22.5974025974025974No Hit
TCTCGATTCCGTGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGA11.2987012987012987No Hit
GCACTTAAGAGATGCTTAACAAACCTTTCCTACAATGTTCCTCAGATTTT11.2987012987012987No Hit
CTTTTGATGGGGCTCGGGACATGTGGAGAGCCTACTCTGACATGAGAGAA11.2987012987012987No Hit
CCCTATTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAAT11.2987012987012987No Hit
GAACACACTTGTGCCCACTTATGACGCTTTCTCTAAACGGCCGATTTCAC11.2987012987012987No Hit
CCCTTTGTCACTCTGAGAACTGAATGTGTGGGAGCAGGGCTTAGAGGTGT11.2987012987012987No Hit
GACCAGGGGAATCCGACTGTTTAATTAAAACAAAGCATCGCGAAGTCCCG11.2987012987012987No Hit
CCCGAGGGGCTCTCGCTTCTGGCGCCAAGCGCCCGGCCGCGCGCCGGCCG11.2987012987012987No Hit
ACTGTGAGGGATAGACAAGCCTCCATCCACAGCTCCCTTCAGGGCACCAA11.2987012987012987No Hit
GGAGCAGTTGGGGATCTTCAGCTTCTAAATGCTAATTACACAGTGAGCTT11.2987012987012987No Hit
GTACACCTGTCAAACGGTAACGCAGGTGTCCTAAGGCGAGCTCAGGGAGG11.2987012987012987No Hit
CCCTCACCCTGGTCACACTGGCTCTCTGCTGCAGCTCCGCTTCTGCCGAG11.2987012987012987No Hit
CCAATTAGGTGCATGAGTAGGTGGCCTGCAGTAATGTTAGCGGTTAGGCG11.2987012987012987No Hit
CGGCGGGGGGGACCGGCCCGCGGCGGGTGTTGACGCGATGTGATTTCTGC11.2987012987012987No Hit
GTGGTGTATGTGTGTTTGCGGTGTCTGGTGTGGTGTGTGTGCAGGGTGTG11.2987012987012987No Hit
GGAAGGTCTCGATCTCCTGACCTCATGATCCGCTGCCCTCAGCCTCCCAA11.2987012987012987No Hit
GCCCTGATCAAGACATGAGGGAGGCAGGGGCTCAGCTGAAGAAGCTGGTG11.2987012987012987No Hit
TCCTATTGCTGTTGCCATGGCAATCTTCTGGAATTCTTTTCTATCAGGTT11.2987012987012987No Hit
GTCACTAACTGTGCGCTGATTGGAATGTCACCACAAGTGAATGCAGTCTT11.2987012987012987No Hit
GCCCAACGGCGCCTCAGCCGCTGGCTCAGCGGAGTTCTCTTCGCTCTACA11.2987012987012987No Hit
TTTAGCAGACAAGGTGGGGCTCCATCAGCGGGGTGGCCTGGGGAGCAGCT11.2987012987012987No Hit
GTGAGGCCCCGCTTTCACGGTCTGTATTCGTACTGAAAATCAAGATCAAG11.2987012987012987No Hit
GAATAAGAGATTTAGGTCGAGGACTCATTTGTGGAGAGGTGGTAGCTAAG11.2987012987012987No Hit
CGTTCCCTATTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCA11.2987012987012987No Hit
CTAGTGAGGTGGTTTAAATATTGTTCAAAACTCTGAAAATGAGCTCTGAT11.2987012987012987No Hit
TCATAATTGATGTTTGGCTTAGTAGTTACTTCGCACCAACCGACACTAGC11.2987012987012987No Hit
GAGGAAGCTCAGTATTTCTCAGGCAGGCCAGCAGGTCGGAAGTGATTGGG11.2987012987012987No Hit
TATCAACGCAGAGTACATGGGGAATAATTGCAATCCCCGATCCCCATCAC11.2987012987012987No Hit
AACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGAGGTTGGG11.2987012987012987No Hit
CCATGAAGCTCGCCGCCCTCCTGGGGCTCTGCGTGGCCCTGTCCTGCAGC11.2987012987012987No Hit
GAGGTGTAGAATAAGTGGGAGGCCCCCGGCGCCCCCCCGGTGTCCCCGCG11.2987012987012987No Hit
ATATCATAATCTCTAGGACATAGCTAAAGCCACACGGAGAAAGTTTATAG11.2987012987012987No Hit
CTCTAAGCCCAACCAGAAGCGTCAGCTAGAAGAGCCAATAGGTGCACAGA11.2987012987012987No Hit
TCAACATATACATCAGTAGCAATAAACCACTAAACGTGATCATGATATGA11.2987012987012987No Hit
ATCCTCGTTAAAGGATTTAAAGTGGACTCATTCCAATTACAGGGCCTCGA11.2987012987012987No Hit
GGTATCCTCTGCCGCCCTCCACACCTCTAAACATCTCCCCTCTCACCTCA11.2987012987012987No Hit
GTCCTCCCCGCGGCGGGGTTTTCAGCCCTCGCGGGTGGGCAGCGTCTTGT11.2987012987012987No Hit
ACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCAGTACGAGAGGAACC11.2987012987012987No Hit
CGGAACCAGAGACAGGCCAGAGCATCCCCCTCCTCCACCATGAAACTCGC11.2987012987012987No Hit
CACTGGCTCTCTGCTGCAGCTCCGCTTCTGCAGAGATCTGCCCGAGCTTT11.2987012987012987No Hit
AGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTCG11.2987012987012987No Hit
GAATATCTGGTCTGGTTGAAAAAAATCAAAGGGAACAATTCACTTTACAA11.2987012987012987No Hit
TCTCTAGATTGTCAAATCCCCATCAGAGATAACAGCTCTCCCCATTAAAG11.2987012987012987No Hit
TTTCTAACCTCTGTAACTTCTCTTTTAAAACAATTTTGCTATCTTAATTG11.2987012987012987No Hit
GTTTGGGGTGATTGCTTTATAGATAGAGGGATTCAAGCCTATTAAAAAAA11.2987012987012987No Hit
GCTAATTACACAGTGAGCTTTGGGCTATTTTTTCCATGAGCTTAATGATG11.2987012987012987No Hit
GGTAAAATGGCTGAGTGAAGCATTGGACTGTAAATCTAAAGACAGGGGTT11.2987012987012987No Hit
CTTTTGAAGTCAGTGAAATATTTCATTCCCAACAGTTTACAGAAACCATG11.2987012987012987No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA11.2987012987012987No Hit
CTCGGAGGCCATCACGTTTCAGAAGCTGGTGAAGGGGCACGCGTACTCGG11.2987012987012987No Hit
CCCCTGGTCATCAAGTTCATCTTCTGTTTCATCATCACTGTAGGGAACCA11.2987012987012987No Hit
GACCAGGGGAATCCGACTGTTTAATTAAAACAAAGCATCGCGAAGGCCCG11.2987012987012987No Hit
GATTATGACTGAACGCCTCTAAGTCAGAATCCCGCCCAGGCGGAACGATA11.2987012987012987No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)