FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003625419

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003625419
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36
Sequences flagged as poor quality0
Sequence length100
%GC57

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CATCATGATCGCATCGGCCGCGAGTTTGTCCCGCACTTGCTGCGCAACAC38.333333333333332No Hit
TGCTTGCTCAGACTCGAGTTTGTGGACGTGCTGAAGCTTCACTTCCCCCT25.555555555555555No Hit
ATGCAGAGGCGCTGCTGCTGGCCGCCGGAGAGCCCCAGGGCGCCCTGACG25.555555555555555No Hit
AACGACCTGGGCGGCATACTGGAAGGTGAATTCCGGCCTGGCTTCTTCGG25.555555555555555No Hit
GTGAGGGATACCTTCGAGCAACGTTTCACGGCCACGGTGATGGCCCGCAA25.555555555555555No Hit
TCGCGACCCCGGGCGAGCCCTTCTCGATCTGAGACGCTCAGGAGGCGGCG25.555555555555555No Hit
GTATGGCGCCAGGCAGGCGCTCTTCGGCATCGACCTCGCGATCCCGTCGC25.555555555555555No Hit
GAGGACGCTGTTGTTGACGGTGTTGATACTGCTGCTGCCGCTGCTGTCGC25.555555555555555No Hit
CTCCTCAACGTCGTCCACCACGGCTTCCCGTTCGTCGCGATCACGGTGCT12.7777777777777777No Hit
CACCAACCTTATCCCGAGCGGCGGTCGGCTGTTCCAACGGTGGGAGCGCC12.7777777777777777No Hit
GTGAACGTCGAGTTGCGTTACCGAGCCGGTGGTTTCGGTCAACCCGTACA12.7777777777777777No Hit
AAGTACCTCAGGTAATAAATGCGTCGAAGAGGTTGGTTCGAGACCCATTG12.7777777777777777No Hit
TTTCATATCTACTTGCAGTAGATGTTTCATAAAGACTTCTTTCCCTTGGA12.7777777777777777No Hit
AGGTGAGAAGATAAATACTTTCATCCGTTGAGATTGAGTGTTAGGATAAT12.7777777777777777No Hit
ACAAATATTTCTTTACTTTTTCCCCACTCTAGTTTTGGGATTCCAGCATA12.7777777777777777No Hit
TTTTTATGCAGGCTACGACTCCGATTCGCTTAAATTTTCACCAGAGTTTT12.7777777777777777No Hit
CTCCCGATTCGCGGCGGACCGCATCCGCGGGGCCCGCGTGCTCCACAACT12.7777777777777777No Hit
GCACAAACGTTGGTGATCGGCGTGGAATAAAGATTCCATTGACGGGATGA12.7777777777777777No Hit
GAGGTAGGAGAATGGCGTGAACCCAGGAGGTGGAGCTTGCAGTGAGCCGA12.7777777777777777No Hit
GATCCAGCAACGCTCGATCATCATCGCACGTCCACCGTGTCTGAAGGCAA12.7777777777777777No Hit
TCTGATGAGATCTTCAAACTTTACAGACATAAATGTGGTTTTTGTTTTTC12.7777777777777777No Hit
GTGCCAACGATGTTGAACAGCCCCACCAGCGCCAGCGAGATGCTGGCCAC12.7777777777777777No Hit
AAGGAAAAGAGTGGATTCTAGAAATTCAGAAAACAAACATGAACTCTTGC12.7777777777777777No Hit
GATCTGATTATCATCAATAATGAGTAAACGTGTTTCCGTACGTTTTAACT12.7777777777777777No Hit
CTCCCGCCCCATTTGACGCGCGGCACCGCCGCGACGTTGATCATATGTGG12.7777777777777777No Hit
GTGACGGACCGATCCAGATGAGGTTCGCGTCGATGACGGCCTGGGCGAAG12.7777777777777777No Hit
GGCCGCCGATGTCGACGACCACGATGTCGCCGGCCTCGACGACGCGGTCC12.7777777777777777No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)