FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003625441

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003625441
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences67
Sequences flagged as poor quality0
Sequence length100
%GC62

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCGCAGCGCTGCTCGCGAAGCCGGCCGACGAGCCGAAGTGGGCCGGGCCC45.970149253731343No Hit
GAAAGGAAGTCGCCGAGGAAGCCCAGCTTCAGCAAGCGGGCCACGATCAG22.9850746268656714No Hit
CCGACGGGCCGTATGCGCGAGCGGGCGTGTCCGACGGGATGGACCGCGCG22.9850746268656714No Hit
GCGCTGGCACCGCTTCGACGCCGCCGCCGTGCAAGCCGCGCTGGACCGCG22.9850746268656714No Hit
GCACGGCGCTGCTGGCGGGGCTGCTGGCCGCCCAAGCGGCGGCCCAGACG22.9850746268656714No Hit
GGTGATGCGCGTGGCGCACGAAGCGCCGGGACTGTCGTCGTCGGTCAATA22.9850746268656714No Hit
GCTTACGCCACCGCCTTAGCCGCAGCCCGCCCCCGCAGCCACTCAAACGT22.9850746268656714No Hit
CTTTTAGTAGAGACGGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAATT22.9850746268656714No Hit
CCGTCCCGCTCACGAGATCGTCAACGGCCCGGATCGGGCGCCTTTGAATG22.9850746268656714No Hit
CCGCATGGCCGAGGGCCGGCACGTCGACCCAGGCCGGCTCGGTGAGGCCA22.9850746268656714No Hit
CTCAGGTACTGATCCGCCCAGGCACATACGCAGCTGCCTTGCCGTTGCGT22.9850746268656714No Hit
GATTCTTATCTTTTGGAATTGTGACTGTTACTTTTCCTTTGTCATCTACA22.9850746268656714No Hit
AATTTGCGCCAAATCAGCATCGATAAATAAAGAAACTTCACAGCCAATTT22.9850746268656714No Hit
GATGGCCGGCGTGGCCGTGGTGGCGCCCTTGACAGGGCCCATCGTCTGGG11.4925373134328357No Hit
GGGTAGATCTTGTCGGGGTGGGTCAGCATGGGCTTGTTGGCTTCGAAGAT11.4925373134328357No Hit
CCAGGCCCACCGCGGCGGCCGGGTCGATCAGGGCCTGCAGTGCAGCCTGC11.4925373134328357No Hit
CTGCTGATCGCGCCGCTGCCGCCGGGCGCGCTGGCTCGTGCATGGGATCC11.4925373134328357No Hit
ACCGTCTACGTCACCATCGACAAGGCGTTCACATAAGCGCAGCGGAGCCC11.4925373134328357No Hit
TTCTATGACCGCCTCCATCGTTTCGCACGTCGAGCGCTCAAGTTGAGCAA11.4925373134328357No Hit
ATGCTCACCATTGAATGCCTGTGCTCGAAGGACAACACAAGCACGGAGAG11.4925373134328357No Hit
ACATTTCGCAGAAGAGCCTGCAGGACGCACAAGCGCTCATGCAAACGGAT11.4925373134328357No Hit
GCCAAAAAACAGCCCAAAACGGGAAAAGGACGAACATAAATCGAGGCAAG11.4925373134328357No Hit
GGCGGTGAAGGTCGTGACCTGGTTGGCGACGCCGAGCTCGACGGTGGCCG11.4925373134328357No Hit
GTTATAATTTGTAACTAAACTAGGAAATGCTGAAGTTACTTGTTGCCTTG11.4925373134328357No Hit
GTGCCTGGCCGGCAGATACCGACATCGCTTCGCGCGCCAACCTGCTCGTG11.4925373134328357No Hit
GCATCAGCGGATCGGGTTTCGGGCGCAGGCGCCGGTGCACCCACATGTGT11.4925373134328357No Hit
CGCAATACAGTCAGCACGATAAGAGTTTTGAACATGTCAAATCCCAACTA11.4925373134328357No Hit
AGGCAAGTTTGGGCCTTTTGGACCCATTTCGAGTCAAGTTCGATCACGAG11.4925373134328357No Hit
TCGATACCTTTGCCGGCCACAAGCACCGCACCTGCCATCTGCTGCCTGCG11.4925373134328357No Hit
GCTGGCTGCGCAGCACGGCCGCCGCTTCGCGCCGCCAGCCCTGCTGCGCG11.4925373134328357No Hit
AGCGCGCTCTCCGGTGCATCGCAAACGATGTCGACGTCACCCGTCCAATC11.4925373134328357No Hit
CGACCGCCGTTGGCGCGCTATGTTTCCTGAGTTCGCTGTTTGGCGACAAG11.4925373134328357No Hit
CCTCGCGCGGCATCGGCGCGGCCATTGCGCACGTGCTGGCGCGTGACGGT11.4925373134328357No Hit
GATCTTGCGGAAGCCCTCGGCCTCGCACTGCGTGAAGAAGTTGCCGTTGG11.4925373134328357No Hit
ACTGCCACTTGCTCACCGGCCGCATTGGCCGCGCGGGCATGGGGCCGTTT11.4925373134328357No Hit
GCTGGAGCTTGAAAAGCGCTACACGCTGTTCGGCCAGGAGGGCAAGGTGC11.4925373134328357No Hit
GCATTCGAATCCGGTCGGAAAGATGTCCGACAGCATGACCAGCGCCTCTT11.4925373134328357No Hit
CGGTGACGGCACTGGGCCGCGACTTGTGGTCGATGTCCGAGCGGCAACTG11.4925373134328357No Hit
GAGTCCCTGGATCTCACGAACGAACGCTATGTCTATCGCACCGGCGTGCC11.4925373134328357No Hit
CAATACGGCGTGCGCGTGAACGCGGTAGCGCCGGGCTACGTCGCGTCGTC11.4925373134328357No Hit
GTCCCGCACTGTGCGCCCACACTCCTCAACCCTTGGGCAGGCGATGGGAC11.4925373134328357No Hit
CCTGCACGACGTGCAGGACCGCAAGCCCAACGGCCACAAGGAAATCGCGC11.4925373134328357No Hit
CGTCTGGAGTCCATCGTCGTGGGTATAGCGCGCGGTATATGGCCAGAATT11.4925373134328357No Hit
TCCGGGCGCCGGCGACGACACGCGCACCTGGGGCCCGCCGTGGCTCAAGG11.4925373134328357No Hit
CTCCCCAAGTACGTGAACGACCGGATCATGCTGGAACTCAACATGACCCT11.4925373134328357No Hit
AGCTGGAACAGCCCGAGACCATCGCGCAGGTTCACATGGCGGCGCTGTGG11.4925373134328357No Hit
CGTGTCGCCGGTGCGCGTGCTGGCGCGTTTGGTACTCATGGGTCTGCCGT11.4925373134328357No Hit
AGAGACACAGTATGCTCTCAGCTACTAAAAAGGAAGTGGGACAGAAGCTC11.4925373134328357No Hit
GCACAAGGTTGACGAGCAGTGCCAGCACGATCAGCACGATGCCGAGTGCG11.4925373134328357No Hit
GTGACGGACTCGTAGAACGCCGCGTAGTCGAACTGGCCCAGCACCGCCAG11.4925373134328357No Hit
ACTTCCTGAAGATCGACCCCGCCCGCCAGGACCGCAAGGTCGCCAAGGCG11.4925373134328357No Hit
GACCTACTCGACGTCTGCACGGATCAACGGCCAGCCGATCTCGGCGATTG11.4925373134328357No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)