FastQCFastQC Report
Wed 31 Aug 2022
EGAF00003625541

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003625541
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences20
Sequences flagged as poor quality0
Sequence length100
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCATCCGCCCCTCCGAAGTCAGCAGGAGCCTCTGGGAAGTAAGGCAGCAG315.0No Hit
CCCTTTGCCCGATCCCGGAAGATACGCTCTAAGCTCGGCAATCGCTCTTG210.0No Hit
CTCTTAGCTGAGTGTCCCGCGGGGCCCGAAGCGTTTACTTTGAAAAAATT15.0No Hit
GGATAAGGGGTGTAGGTGTGCCTTGTGGTAAGAAGTGGGCTAGGGCATTT15.0No Hit
GTACTTGCGGGTGGGCAAGGCTGTCACACCGCCCATGCCCCTACTCACAC15.0No Hit
GTGTGCTACTGCGAAGGGGAGGAAAGCGGGGAGGGGGACCGCGGCGGCTT15.0No Hit
GAGTAAAGGTGGGGGCCCTATGGCTCTTCAGAGGCTGCTCAATAGGTCAG15.0No Hit
CTCTTAAGCTGGATTCAGTCGTGTCAAGCGCGTGTCATACGATTACAAGG15.0No Hit
CAATGAGCCAGGAAAAAAGAAAAGGATGGCTTTAGAGATTTTTGGAGGTT15.0No Hit
CATCCATCCGACATTGAAGTTGACTTACTGAAGAATGGAGAGAGAATTGA15.0No Hit
AAAACATACTTTTGTTTTTGTTTTATCAGTGCAATTTGTTTTTGAAGACG15.0No Hit
GCGTCCCATAGGCTGCCTGAAGGTGGGTAGGGCGGCCTGCGGCATAGTGG15.0No Hit
AGGCTGAAGCGGTCACTCCCGTTGACCGGCAGATTGCTGATACCGGCCTT15.0No Hit
GATCTACACTTTTTTTTTCGTCGGCAGCGTCAGATGTGTAAAAAAAAAAA15.0No Hit
GCCCAGCCTCCGGGCCACCCAGCCTGTGGAGGTTGGTCAGGTGGTCACCC15.0No Hit
GTACATGGGGCCTTTCAGCTAAAGGGGAGATCTGGATGGCATCTACTTCG15.0No Hit
CCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGT15.0No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)