FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003625632

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003625632
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59
Sequences flagged as poor quality0
Sequence length100
%GC62

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTCATTGCCATGTCCACGGCAAGGAAGCTTTTCCCCCTCGCGGAGAAGA35.084745762711865No Hit
GCTAGAAGGTGTATTAGAACCAACCTATGGGATTATGGTTTACCAAGAAC35.084745762711865No Hit
GGACGAACGTCTGTTTCTCACGCGCGAGCGTGTTGTAGATCTTGAGTGAT23.389830508474576No Hit
CCACACGTGCCATTTCCAGGCACTTGTTCGAATAGCCCCACTCGTTGTCG23.389830508474576No Hit
GTCCGACACCGGCGAAACCCTGTCACCCGCCGATGGCGAGCGCATCGTGC23.389830508474576No Hit
GCAGTAGCACGGCAAAGCGGATGGCCGAATGCAGCCCCGATTGCAGCCAT23.389830508474576No Hit
CGCGTAGGCGCTCCGGTGCATGCGCTCGCCGAGCAGCACGCGCGCACCCA23.389830508474576No Hit
GGCGGTCTCGCGCGCATCGGGCAGGTTCTGGCGCGCGAGCTCGCCGTAGT23.389830508474576No Hit
GCCAGTAGTTAGCCGCTTCGGAATCCAGCATACCTTCTTTGTACTCTGGG23.389830508474576No Hit
GCGCCTTGCTGATGTCGAGCGGCGTGAGGCCCGGCACGGCGGCACGCAGC23.389830508474576No Hit
GCTCAGGAAGTCATCGTGCGTGACTTCCCTGCCCTCTTCCGACACGACTT23.389830508474576No Hit
GGCGAGTTCAGCCACGCAGTACGGCAGGCCTATCTCGACTTGTCGTCGCG23.389830508474576No Hit
CGATGCCGAAATGAAGGCGCGCTTTCCCGAGACGGGCGTGCGCGTCACCC23.389830508474576No Hit
TGGCGGGCCAGCACGCGGCCGAAGACGGGGGACAGCTCGGGCGCGGTCAC23.389830508474576No Hit
GTGCAGATGGGGCTGGACCGCATTCAGGTGGGCGACCTGGTGCTTGATCT23.389830508474576No Hit
CGCCCAGGCCGTGGGCTGCCAGCATCACGCCGAGCGCTGCGGCGCCGCCC11.694915254237288No Hit
CGTTCACGGTGCTGTCCGGCAGACCCTCGGCCAAGCCCAGGCGCTGGGGC11.694915254237288No Hit
GGACTCGACGCTCATCAGTTCTCCGTTCTGGTCGTCTTGGGGGCTGCGGC11.694915254237288No Hit
CACCAGGGCAACCTGATGCGGGCATCGGTGGAACTGGCCAAGGATTGGCG11.694915254237288No Hit
TCATCGACCTGTACCACCGCATGTTGCCGCGTTTGCCAAGGGTGCTGCCC11.694915254237288No Hit
CTGATGGACCTGGAGCCCGAGTTTGCCGTGCTGCGCGCGCTGCATCCGCA11.694915254237288No Hit
TTGGATGAACGATGCGCAAGTGCTGGGCAAAAAATTCTGTTACCACGTAG11.694915254237288No Hit
GTGCAATCACTGGCCGGCGTGCTGCTGCCGAGCGCGACGGTGTTCCTGCT11.694915254237288No Hit
GATAAGGATCTCGTTCATGGTCAAAACGAACCAGGTAGAATATCCATTTA11.694915254237288No Hit
CGTCCTCACCCGCCCGGACGGCAGCCGCTTCCTGCGGGTGTGCTTCGCGG11.694915254237288No Hit
GAAGTCGATCGTCGACGCGGTCAGGACGAGCACCAGCAGGGCGCCGAGTG11.694915254237288No Hit
GCATGTCGACGAGCACCATGCCGCGCGTGTTCTGCGCCAGCACGTAGATG11.694915254237288No Hit
GGCCTGTACCCTGCAGCAGGTGATGGCCGCCCACGGCGTGCGTCTGCAGC11.694915254237288No Hit
CTGGAAGGCGACAGCCCCAACCCCATGGACGTGAATGACGCCAGCCAGCA11.694915254237288No Hit
ATCCTGGGACAGCATGAGCCTGTTCAACACGCAGGCCCAAGCGATTAGCA11.694915254237288No Hit
AACCTGCGGCTACGCAAGACTTCATTATGATCAATCACCCTGTATTCTTT11.694915254237288No Hit
TTCTTAGGTGGCTTATTAGCTCAACGTATGAACATCATGAAACTGATGTT11.694915254237288No Hit
TTCAAGGCGCCATCAAGGGCAGGAACGTCAACGGCCAAACCGTTGGTGTG11.694915254237288No Hit
GTATGTCGAGCAGGCGGAAGCTGGCAAGATCAAGCGCTTTCGGCGCACTA11.694915254237288No Hit
CGTACCACGCCGATGCCGCCCCGCCCGGGCGCGGTGGCAATCGCCGCGAT11.694915254237288No Hit
CCTCAGCTACAGGCAGCAGCAATGACAGCATGAGTTCCAGCCCCTTCACG11.694915254237288No Hit
GGTGATACCGCAATGGACTGTAACCGTACTTCATTACGTCAAGGTGCCCA11.694915254237288No Hit
GGACTGGATCATCGTCGATCTCGAGCACGGCCCGATCGATCTCGGCACCG11.694915254237288No Hit
GGTAGTAGCGGCGCAGGCCGCGCTCGGCAAGCGCCTGGCGCTGCCGCTCC11.694915254237288No Hit
GCTTCAATGCGATCAGCTCGGCCGGCTCCAATCCGTGGGAGCCGCATCCC11.694915254237288No Hit
CCAGGAGGTGAGCTGAAGTTCTGAATTATATGTGAGATTGAAGTTCTGAT11.694915254237288No Hit
GGGAAACACGGTCCGTTTCTTGGATGCTCACAGTATCCGGCGTGTGACTA11.694915254237288No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)