FastQCFastQC Report
Tue 10 May 2022
EGAF00003625659

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003625659
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461684
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTAAGAGGTATTTATTCAGTTGCTGGCACCTCTCCCAGTGTAAATCTGG12320.2668491868897341No Hit
CAATAATACAGCACATAAAAGAGATTACATTAAGAGAAGAGACAGGAACT11270.24410635846163178No Hit
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCA8710.18865717677025845No Hit
GTATCAACGCAGAGTACATGGGGAATAATTGCAATCCCCGATCCCCATCA7480.16201557775448142No Hit
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA7480.16201557775448142No Hit
GTATTTATTCAGTTGCTGGCACCTCTCCCAGTGTAAATCTGGACTTGGCT7450.16136578265653564No Hit
TCTTTATCCAGTGTACAAAGCTTGAGACTTTGGTGCAGGCTCGTGGAGGC7070.1531350447492224No Hit
GTACATGGGAGCTCCAACCAGGGCAGCCTTCCTGAGAAGATGCAACCAAT6520.14122213462021643No Hit
GTCGTAATAATGGCGTAAGTCAGATTCGCACTTTCGATCTTCCTGCACTG6240.13515738037272249No Hit
GTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG5990.1297424212231743No Hit
GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT5680.12302787187773456No Hit
GTTATTGCTCAATCTCGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGT5480.118695904558096No Hit
TCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATT5460.11826270782613216No Hit
TTCTTACACCGCGAGGAAGCTTCCTCGCAACTTTGTGGTAGATTACTATG5210.11284774867658398No Hit
ATGTCTAAGTACGCACGGCCGGTACAGTGAAACTGCGAATGGCTCATTAA5010.10851578135694544No Hit
GAATAATGGAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAG4990.1080825846249816No Hit
ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCG4850.10505020750123462No Hit
ATCTTATGATCTGGGATCAGAAGTCTCTGAAGAGGTGCGGTGGCTTCCTG4780.10353401893936114No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)