FastQCFastQC Report
Tue 10 May 2022
EGAF00003625660

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003625660
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences461684
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTAAGAGGTATTTATTCAGTTGCTGGCACCTCTCCCAGTGTAAATCTGG11380.24648894048743294No Hit
CAATAATACAGCACATAAAAGAGATTACATTAAGAGAAGAGACAGGAACT10380.22482910388924027No Hit
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCA7900.17111270912572235No Hit
GTATCAACGCAGAGTACATGGGGAATAATTGCAATCCCCGATCCCCATCA7590.16439815978028263No Hit
TCTTTATCCAGTGTACAAAGCTTGAGACTTTGGTGCAGGCTCGTGGAGGC7370.15963299572868023No Hit
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA7240.15681721697091516No Hit
GTATTTATTCAGTTGCTGGCACCTCTCCCAGTGTAAATCTGGACTTGGCT6670.14447111010994532No Hit
GTACATGGGAGCTCCAACCAGGGCAGCCTTCCTGAGAAGATGCAACCAAT6250.13537397873870438No Hit
GTCGTAATAATGGCGTAAGTCAGATTCGCACTTTCGATCTTCCTGCACTG6080.13169180651701162No Hit
TCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATT5510.1193456996560418No Hit
GTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG5420.11739631436220445No Hit
ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCG5240.11349754377452975No Hit
TTCTTACACCGCGAGGAAGCTTCCTCGCAACTTTGTGGTAGATTACTATG5190.11241455194462013No Hit
TCCCCATAGGGGACACTTATCCTTTGGCTAAACTAATATAAATAATGGAA5080.11003196991881893No Hit
GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT4960.1074327895270358No Hit
GTTATTGCTCAATCTCGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGT4920.10656639606310811No Hit
CTTTAATATACGCTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGA4710.10201783037748764No Hit
GAATAATGGAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAG4630.10028504344963221No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)