FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003625663

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003625663
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences109
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCATGGCAAAGAAACTTCCCATGGGCACCTGCACACACCCCAGGCCTCCT43.669724770642202No Hit
AGGCAAGGGGCGGGGACGGGCGGTGGCTCGCCTCGCGGCGGACCGCCCGC32.7522935779816518No Hit
GCATCAGCGCGTGGAGCCGGACGGCACCACGACCGACCTCGAGCCGACGT32.7522935779816518No Hit
TCCCGCACTTCCTCACCAAGGAAGGTAATGCCCTCTGACGAACGCGGGAT32.7522935779816518No Hit
GTCTTATCTGGGTGCTGTGTCTGGCACCCCAAAACAACTACAATAGTAAC32.7522935779816518No Hit
CAACTCTACAAGGAGGGTTTTCTGTAAGATGTGTACGACTGTCCGAAGAA21.834862385321101No Hit
ACCTTGGATTGTCTATTTGTGCTCTTTCAGACTTTTTGATGTAATAGGCA21.834862385321101No Hit
GTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG21.834862385321101No Hit
CTTAAACTCTGACCGCCGGTGAGCCAGGCAGAACAGAGCCATATTTCTCT21.834862385321101No Hit
GCCTCTGGCGGAGTGTTGGGTGCTTGCGACGGCGAACTCACATTGGCTCA21.834862385321101No Hit
TCCCGTACTTCTGTCTTCCAGTTTTCCACTTCAAACTTCTATCTTCTCCA21.834862385321101No Hit
TGCAGCTAGGTTTGAGAGCCAATATTAAAAAAAAATTCTAATTATTTAAA21.834862385321101No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG21.834862385321101Clontech Universal Primer Mix Long (96% over 26bp)
CTTCTACACTATGCTTTGACTATGTGAATTAATAAGCCAGAGTCTAGGAA21.834862385321101No Hit
GGGCAGAGGATGACAGACCCATGTCCTTGGCCAATCTCAAAGCCCCACTG21.834862385321101No Hit
CTTCCTAACTGGGGGACCTTTTTTGTGTAAATTACTTCAACTTTTACAAC21.834862385321101No Hit
GCCGCTCATTTGCGCTCACTGTAACACCGCCGGGAGAATCCTCAGTCAAA21.834862385321101No Hit
ACACTTTATTGTCTCCATTGAGAGCATGTGGCCCCTTGCTTAGTTCTTAC21.834862385321101No Hit
GAATGGACTCGAATGGAATCATCATCGAATGGAATCAAATGGAATCCTCG10.9174311926605505No Hit
GGCTGGGTCGCTACACCGAACGTGCCGAGAACGCGGTGCGCCTGGCCCGC10.9174311926605505No Hit
TCCACGATACTCCTACTCCGATGCACCACACTGGAAGTGACGAGCTCAGA10.9174311926605505No Hit
GGCCTATCCCACTAAACTGCTGGCTAGAGCTCTGTGAACTTCTCCCAGTT10.9174311926605505No Hit
ACATGGTAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATC10.9174311926605505Clontech Universal Primer Mix Long (96% over 26bp)
CTACAAAATAGTCATTGCATGCAATGGTGAGGCCCGCAATTAGGGAAAAG10.9174311926605505No Hit
CCTCGGCCCCGGGGATGAATCGGGCGTCGACCTCGGCGCTGGCACGCGTC10.9174311926605505No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTAACACGGCTTA10.9174311926605505No Hit
TTCTCTAAGTAGTCTATTCAGCAGTAGAAATTGAAAGTAAAGGCCGCTCT10.9174311926605505No Hit
GGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACG10.9174311926605505Clontech Universal Primer Mix Long (96% over 26bp)
CCAATAAATAGCATGGGTTCCCAGAACTCCGGGCCTTCGCAGCCTCCACA10.9174311926605505No Hit
TCTCTAGAATTTTCAGATATGTAAGCCAGTAAATTTCCTTGTTGTTTAAA10.9174311926605505No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG10.9174311926605505Clontech Universal Primer Mix Long (96% over 26bp)
TACTTAAAGCCTCCCATTAGAAAGCCTGCTTAGTATTAGGATGTCTATTA10.9174311926605505No Hit
GACTGACAAAATGGAAGGGTAATATAGATAATTGTACAGTATTAGTTGGA10.9174311926605505No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG10.9174311926605505No Hit
AGATGGGTATGACGCCAGAGCAGGCCCTCTGGTCAGCGACTGCAGGCGGT10.9174311926605505No Hit
TGCCATTGCACTCCAGCTTGGGTGACAGAGTGAGACAGGAATGAAAGAAA10.9174311926605505No Hit
ATAATTAACTGACAGACCTAACTGAAGCACAGAGAATACATCAGACTTAT10.9174311926605505No Hit
CTTGCTAGTTGTGGAAATGTAATTGATTTTTATTTATTGACCTTATATTG10.9174311926605505No Hit
GGTCACTGGAGACAAGGTAAAGTCCACAGAGCCCCCTCATCTCACATCCA10.9174311926605505No Hit
TTCCTGGAGACTTCAGGTGTGGTAGCCGGCGCCGCGCCCATAGCCGGACG10.9174311926605505No Hit
ACGTCAGGGTCTCGACGCGACACGATAGCTGAGATGACAGCAATACCATC10.9174311926605505No Hit
GTACTAGGCCAGGGTTCATAAAGCTATTTCAGGTTTAGGCCTCTCAGGAG10.9174311926605505No Hit
GGCTTATTGTCAGTGACGGAATCGGCATAGCGAGTGAGCCGGGCAATGGA10.9174311926605505No Hit
CCATCACACCTGGCTAATTTTGTATTTTTAGTAGAGACGGAGGAGTTTCT10.9174311926605505No Hit
ACTATAGAATGTGCAACATTTTCATCAAGATAGAAAAGGTAAAGAAAGCA10.9174311926605505No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAAAAAAAAAAA10.9174311926605505Clontech Universal Primer Mix Long (95% over 22bp)
GTTAATTGTCAGTTCAGTGTTTTAATCTGACGCAGGCTTATGCGGAGGAG10.9174311926605505No Hit
CACATGTGCTGTCTGCCATACCACCTCTGCACTATTTGGCACCGATCTCC10.9174311926605505No Hit
ATCTAATTGAGCTTCTATCAATATTTTGAATTTTTCATCTGGCATTTCAA10.9174311926605505No Hit
CTTCTCATGATAGTGATTTCTCATGAGATCTGATGGTTTTATAAGCATCT10.9174311926605505No Hit
GCTAAGCCCCTGAAAGCAGGGTAATGCTCATAAAAGGACTGTTCCCGCGG10.9174311926605505No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT10.9174311926605505Clontech Universal Primer Mix Long (96% over 26bp)
AATACAGACCGTGAAAGCGGGGCCTCACGATCCTTCTGACCTTTTGGGTT10.9174311926605505No Hit
GTGTGAGAAGCACGCGGATCGACGCGACCGCGCCGCAGCCATGGGAGCGG10.9174311926605505No Hit
AGCGGAACATGTCCTCGCACAGCAGGGCTCGCAGGCACAGTGCCAGGCTC10.9174311926605505No Hit
CTTCAATATAGTTCTTTATTTCTTCAGAACATTTAGACACTTGTTGTCTC10.9174311926605505No Hit
ACTTTTTTTTTTTTTTTTTGCGTTGATACCACTGCTTCCCATGTACTCTG10.9174311926605505Clontech Universal Primer Mix Long (95% over 21bp)
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTGCGTTGATACCACGTCT10.9174311926605505No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT10.9174311926605505No Hit
GGCCATTGACGTAAGCGACCTCCGACCGGTCCCGGACAATCAAGAAGTTT10.9174311926605505No Hit
CTTCCACATAATAAGCTCTCTCAGCCTGGCATCTTAGGCTGGCATCAGAG10.9174311926605505No Hit
GGAAGAAATGATGTGGAGTCCGGCGTGCCTCCCCGACCCTGTTCCTCTTC10.9174311926605505No Hit
ACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATC10.9174311926605505Clontech Universal Primer Mix Long (96% over 26bp)
GATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGT10.9174311926605505Clontech Universal Primer Mix Long (96% over 26bp)
AGTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACC10.9174311926605505No Hit
ACACTGGGCAGAAGATGCCTCTGATTGGTCTGGGTACCTGGAAGAGTGAG10.9174311926605505No Hit
ACTTTTATTTATTTATTTTGAGACGGAGTTTCGCTCTTGTTGCCCAGGCT10.9174311926605505No Hit
ATCGAATGGATTCATTGAATGGAATCAGATGGAATCATTGAATGGACTGG10.9174311926605505No Hit
GGCTTCCTGCCCGGGCTGGCGCGCCGGCTGATCGGCGAGAAGCTCATGCT10.9174311926605505No Hit
CCTGCAGGGTCGGACCGATACCTGGAGAGCCGCGATGCCTCTCGACTGAG10.9174311926605505No Hit
TTTCTGGGGAGTCATTACTCTGTCCAAAGTCGAGGTAGCTCAGAGGCCTT10.9174311926605505No Hit
GAGTCAAGATTCTGGCCTTTGTTTCCTTTAGCTGTTCAGGGCAACAACGA10.9174311926605505No Hit
GATACCACTGCTTCCCATGTACTCTGCGTTGATACCCTGTCTCTTATACA10.9174311926605505No Hit
GCATAAGGGAGCTGCAGCCAGCCCACAGAGCGAAGAGCCTGCCCCAGCTA10.9174311926605505No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACTTTT10.9174311926605505Clontech Universal Primer Mix Long (96% over 26bp)
GTACATGGGAAGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAA10.9174311926605505Clontech Universal Primer Mix Long (95% over 21bp)
AAATACTACCGTATGGCCCACCATAATTACCCCCATACTCCTTACACTAT10.9174311926605505No Hit
ACTCCCCCCGGAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCGGCGGG10.9174311926605505No Hit
CACTTATTTTAAGTATGTGCTTGGATGCGTTACATTCATGAACCACCATG10.9174311926605505No Hit
GGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCAT10.9174311926605505No Hit
GCCACCGCGTGCGTCCTCTCAGTAAGGACGCCGAGCTGACTGCCCGGCGC10.9174311926605505No Hit
ACTGGAAACAGAGTCTCTAGCAAAACCTGCACATCCTACTAGTCAGGCTC10.9174311926605505No Hit
GAATTAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACC10.9174311926605505No Hit
TCTCTATTCTTTTCTTCGCCTTCCCGTACTTCTGTCTTCCAGTTTTCCAC10.9174311926605505No Hit
GAGCCGCAGACCCATGAGACCTTCTGCCAGAAAGTGGGCCTGCTGTGCAC10.9174311926605505No Hit

[OK]Adapter Content

Adapter graph