FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003625664

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003625664
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences109
Sequences flagged as poor quality0
Sequence length100
%GC46

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTACTGATGCAAATGCTTATCTCTTCTGGAAACACCTTCACAGACAGACC43.669724770642202No Hit
ACCCACTCCCGACCCGGGGAGGTAGTGACGAAAAATAACAATACAGGACT32.7522935779816518No Hit
GTCGGGGGTGCTCATGGCAGGCCCGTCCTTCAGAGGGCGACCGCGGTGGA32.7522935779816518No Hit
ACCCCGTTACTCGCGTTCGCGGTTCGGAATTTGAAGGCTGATGCCGGCAT32.7522935779816518No Hit
GATACATATTGCCTTAAATTCTGTTTTGTCATTGCTTTAGATTTATCCCT32.7522935779816518No Hit
GCCCCACTGGGAGGGGACAGGTACAGTTCTCTGAGGTCTTTCGAGAACTG21.834862385321101No Hit
ATCGCAGAGACGGCATCGGTGATCTGAGCCAATGTGAGTTCGCCGTCGCA21.834862385321101No Hit
GACCACAGGACCGGGACGAAATTAAAATTGCTAATGAAGTTTCGGGCACA21.834862385321101No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG21.834862385321101Clontech Universal Primer Mix Long (96% over 26bp)
GACTACAGGAGCCCGCCACCGCTCCCGGCTAATTTTTTGTATTTTTAGTA21.834862385321101No Hit
GATCATTGGCATCCTGGGCGTTTCTTGCCCTCTACTGACTACTGATTGGA21.834862385321101No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT21.834862385321101Clontech Universal Primer Mix Long (96% over 26bp)
ATCTGGAGGGGCTTCATCTGTGGGGCCCAAAGTCACAGGAACGAGGCCGG21.834862385321101No Hit
ATAGAAGGGCAATGCTTTTAGATTAAAATGAAGGTGACTTAAACAGCTTA21.834862385321101No Hit
CTCCAATGGATCCTCGTTAAAGGATTTAAAGTGGACTCATTCCAATTACA21.834862385321101No Hit
GAATAGTCTGTACACATACTCCCCAAGAGGTTGGCTTCCTCTCTCCCAAC21.834862385321101No Hit
GACACAACCTATCAAAACTTCTGAGATACAGCAAAAGCAGTGCTAAAAGT21.834862385321101No Hit
ACACTAGAGCCTGGCTCATAAATGAAATAACATATATGAAGTGCCTGGTA21.834862385321101No Hit
GTCTCATCTAGACATCAAGCAGGGAAAATCCAGGGAGATTAAATTCATGG21.834862385321101No Hit
CACATCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAATCCCA10.9174311926605505No Hit
GCGTATCAACGCAGAGTACATGGGGAAAATGGAAGTTGAGCAGCTTCGCA10.9174311926605505No Hit
CACAGGAACCATGAAAAAGCAAGGAAATGTGACCCACCATATAACAACTG10.9174311926605505No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT10.9174311926605505No Hit
ACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATACACTGGGTTGAAAC10.9174311926605505No Hit
GTTGGTAGGTATTTAAAAAGAAAAGGTAAACTGTGTGTGGTTAATAGACA10.9174311926605505No Hit
CATGATACTTGATGTTATTAAAAACCCAAATTTAAACATAACCCAAAAGC10.9174311926605505No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTGGGTTTAAA10.9174311926605505No Hit
GTCCAGCCTAAGGAACCGGCCCGCTTTGCAAACCCGGTCGATGAGGGGGA10.9174311926605505No Hit
GTGCTCGGCAGACACCTCGGCCGGCCCATTCGTCGAGCTCGCGCCGGCCG10.9174311926605505No Hit
GGTGAAGTCAAACACCTTGATGTTCTGAAGGATTCGAGAAGGAGTGATAC10.9174311926605505No Hit
CTCCTCTCCTTGTCCTTATACCTGAAAACAGCTTTTGGGATCAGCTGGAT10.9174311926605505No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTT10.9174311926605505Clontech Universal Primer Mix Long (96% over 26bp)
CTATTTGGCACCGATCTCCCTCACTGTTAAGGAAACACATGCTTAAAAAC10.9174311926605505No Hit
GGATAGGGCAGATCAAGGAGAGCCATCTGAGCTCGTCACTTCCAGTGTGG10.9174311926605505No Hit
CACCAGGTGAGGCTCTCCACACATGTTCCTACTGAGAGGTCAGGCAGCAG10.9174311926605505No Hit
ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC10.9174311926605505Clontech Universal Primer Mix Long (96% over 26bp)
AAATCATACTCTGGCCTTTTTTTCCCCCTTACTGTTGTTTCCCAGATCTT10.9174311926605505No Hit
CATCAATATACGTACGGCCTTCCGAACCCTATTCGGTGCGTCATCAGAAC10.9174311926605505No Hit
ACGATAATTCCATTCGATTCCATTGGAGGATAATTCCATTTGATTCCATT10.9174311926605505No Hit
GTCTCTCTGACTTTCTTTCTCTCTTCCTTCCTTCTTTCTCTTTCTTTCTT10.9174311926605505No Hit
AGGTACAATAAATGTTTGTATGTTGAATTAATGTGAAATGAGCCTGGGAA10.9174311926605505No Hit
CATCTTTAGAATGGGAATCTGTTGGGGTGATGAGACCCAACACCAGGTCG10.9174311926605505No Hit
GCACGCTCTCGATTTCTGCTGGAATGTCTGGTTGAGCAGGAGCGGTATCT10.9174311926605505No Hit
ATTGAGAGAAAGGACTACAGAGCCCCGAATTAATACCAATAGAAGGGCAA10.9174311926605505No Hit
GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCCTGTCTCTTATACA10.9174311926605505No Hit
CATGGGAAGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAA10.9174311926605505Clontech Universal Primer Mix Long (95% over 22bp)
ACTAACAGTTAAATTTACAAGGGGATTTAGAGGGTTCTGTGGGCAAATTT10.9174311926605505No Hit
CCCATGACCCGCCGGGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGG10.9174311926605505No Hit
GTACCCTTGTTGGTGCTACGGGCTGTTCGGCCAATACGGTGCACATAATC10.9174311926605505No Hit
CGGCAGCACCATAGTGGCGGCCAGCAGGAAGTCCAGTCAGAAGTTGGTGA10.9174311926605505No Hit
GTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAG10.9174311926605505No Hit
GTGTGGGAACAGCGCGTAATTTTATTTGCCCCAAGATACTGCCTTAGTCA10.9174311926605505No Hit
CGCTTCCCCTCCTCCTTCTGCGGCATCTGCGGCCTCAAGCCCACAGGGAA10.9174311926605505No Hit
TACATAGACTTCGTTCCACCCTACTTACTAGGATTTGAAGTTAAAAGGTG10.9174311926605505No Hit
CTCGATTCCACTTGACATTGATTCCATTCGATTCCATTCAATGATTCCAT10.9174311926605505No Hit
GTTAGTGGGAAGGCATCTAGTTTCTCACTACTAAGCGTGATGTGAAATGT10.9174311926605505No Hit
CTCGCGCACCGCGGCCGCGGCCTGTCGGATGCAGCGCAGGCTGAAACCCA10.9174311926605505No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA10.9174311926605505Clontech SMARTer II A Oligonucleotide (100% over 25bp)
TCTCCATGTTGGTCAGGCTGGTCTTGTACTCCCCGCCACGGGGAGTTCAA10.9174311926605505No Hit
GCTTCGCCCCGTACGTGGGCCTGCAGCTCGAGAAGTTCCACTATCAGGCT10.9174311926605505No Hit
ACATGGGAAGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA10.9174311926605505Clontech Universal Primer Mix Long (95% over 22bp)
CATACACGTCAACCCCAAGTTCAACCTGATTCACTCAGTCACTCCTGCAC10.9174311926605505No Hit
GTCCTAGCCAGAGTAATAAGGCAAAAAATATTTTATTCATAGGTGAGATG10.9174311926605505No Hit
TTCTAGAAGAGATAAAAATTAATCTATAGTGACAATAAGCAGATCAGTGA10.9174311926605505No Hit
CTCCGGAGATCGTCAGCTCTTGGTAATGCACCGTATTGGGGGTGATGGTC10.9174311926605505No Hit
GGCTTAATTGACTCACAGTTCTGCATTGCTGGGGAGGTCTCAGGAAACGT10.9174311926605505No Hit
GTCTTCATGGGTGGTGCCTCCTGCCCGTGGCTGGGGGAAGGAAGGGGAGT10.9174311926605505No Hit
CCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCTCGATTCCGTGG10.9174311926605505No Hit
GCCATGGAAACCATGATGTTTACATTTCACAAATTCGCTGGGGATAAAGG10.9174311926605505No Hit
TGACATTGCTTGGTGTCAGCTGACAGGGGCTCTGGCCACAGCTTGTGGGG10.9174311926605505No Hit
TCTTAGAGCGAAAGCCTATAATCACTGCGCCCGCTCATACGGGGATGGCC10.9174311926605505No Hit
GGTTTATTTTAGAATAGCTAAAAAATAGGAAAATCTAAATGTCCACTGAT10.9174311926605505No Hit
GTGTGTCAGTAGCCGAGCCTTTCCTTGGTCAGGAGTCTCAAAGGGTGTCC10.9174311926605505No Hit
GGCAACTGGCGCAGGCGTTTAATCAGCTACAACATCGCCCGTTTCGCGCC10.9174311926605505No Hit
GTGCGTACTTAGACATGCATGGCTTAATCTTTGAGACAAGCATATGCTAC10.9174311926605505No Hit
GGAAGCAGTGGTACCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA10.9174311926605505No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACTTT10.9174311926605505Clontech SMART CDS Primer II A (100% over 26bp)
TATCGACTCCTACCAATGGCCCGACCTACATCACCCGGTCCAGGAAGAGT10.9174311926605505No Hit
CGATACGCCAGGGCATCCCGGAGACGTGCACGAGTCTCCTGGCCCAGGAC10.9174311926605505No Hit
GCCTTTGGGTTTCCATGTGCAATGTGGGCCAGGGCCAGAGCCAGGGCCAG10.9174311926605505No Hit
GCTTCCCATGTACTCTGCGTTGATACACTGCTTCCCATGTACTCTGCGTT10.9174311926605505No Hit
CTCGCAACCATGGTGGAAGGCAAAGAAGGAGTAAAGGCATGTCTTCCACG10.9174311926605505No Hit
CAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT10.9174311926605505No Hit
ATACATTACTTTAGCTGAACTCAGATTTAGTGCAAGTAAAATGTTAGAGG10.9174311926605505No Hit

[OK]Adapter Content

Adapter graph