FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003625799

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003625799
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences144
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA96.25Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG32.083333333333333Clontech SMARTer II A Oligonucleotide (100% over 25bp)
CCCTTAGTGTTATTAGACATTAGCTACTAAAATAGCCTTTTTACTGACTA32.083333333333333No Hit
CTCCATCCCCAGAAATCTTACAATTTGATTCTCTGCAAAAATGGTCTTTT21.3888888888888888No Hit
CTCTTTGTCCTCTCACCTATCAAGGAGCCTGCCAAGGTCTCACCAAGAGC21.3888888888888888No Hit
ATTACTTGTTCAGTGAGAGCAAGTTTTTCATTTCCACAAAGAAGAATTTT21.3888888888888888No Hit
GTCGGCCTGCGGCAGCAGCGCGGGTGACAGCGCCGGCGCCACCAGCGCGT21.3888888888888888No Hit
ACCCTGACATTGTTACCAGTGACTGAAATATCCATGTTACCACATTGTCC21.3888888888888888No Hit
ATCTGGGTCATGGCGCCTGGTTTCAGACAACCTGAATCAAATCTTAGGCT21.3888888888888888No Hit
CTGCACTGCCCAGTGGGCCACTAGGGGCAGGTTCAAGGCTGTTTGGGTAT21.3888888888888888No Hit
GGCTCGGCGGCCGGCGGCACAACCGGCTCGGGCTCGGCGCGTGCCTGCGT21.3888888888888888No Hit
GTTTCAATGTTCAAAGCATCCCGCTCAGCATCAAAGTTAGTATAGGCTTT21.3888888888888888No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTC21.3888888888888888Clontech SMART CDS Primer II A (100% over 26bp)
TATCAACGCAGAGTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGA21.3888888888888888Clontech Universal Primer Mix Long (96% over 25bp)
ATCTCGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCC21.3888888888888888No Hit
TATTTAAAGTGCGTTGCTTTTTTCTCATTTATAAGGTTAAATAATTCTCA21.3888888888888888No Hit
ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC21.3888888888888888Clontech Universal Primer Mix Long (96% over 26bp)
ACGCAGAGTACATGGAAAGCAGTGGTATCAACGCAGAGTACTGGGAAGCA21.3888888888888888Clontech Universal Primer Mix Long (96% over 26bp)
TTAGAATAGGGTGTGTGTTGCCTCCAAAATCCAATGACACCAAACATTGT21.3888888888888888No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT21.3888888888888888Clontech Universal Primer Mix Long (96% over 26bp)
ACATGGGAAGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAGTACCTGT21.3888888888888888Clontech Universal Primer Mix Long (95% over 22bp)
CAGCTAATGATTTGTTTTCACATTTTGCTTCTCCAGTTGAACACCTTGCC21.3888888888888888No Hit
GTATCAACGCAGAGTACATGGGGAATAATTGCAATCCCCGATCCCCATCA21.3888888888888888No Hit
GAGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGGCGCGC10.6944444444444444No Hit
GCTCTAGAGGGGGTAGAGGGGGTGCTATAGGGTAAATACGGGCCCTATTT10.6944444444444444No Hit
GATTTAAAGTGGACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTAT10.6944444444444444No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCTTTTTTT10.6944444444444444Clontech SMARTer II A Oligonucleotide (100% over 25bp)
ATCAATCTGTCAATCCTGTCCGTGTCCGGGCCGGGTGAGGTTTCCCGTGT10.6944444444444444No Hit
AATACCAATAGAAGGGCAATGCTTTTAGATTAAAATGAAGGTGACTTAAA10.6944444444444444No Hit
TCCTAGAGAAAAGTGAATTTGCAAATCTGAGAGCAGAGAATGAGAAAATG10.6944444444444444No Hit
CATGGGCGGAGGAATTGGGGCAAGAGGTCCCGGGGAAACGAAACTGGAAA10.6944444444444444No Hit
GTGTGTCTTAGAATGGACCCCAGAAAGATCCCTACAGATGACCAAGCTCT10.6944444444444444No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG10.6944444444444444Clontech Universal Primer Mix Long (96% over 26bp)
TGCCAAAGTCACAAAATGAAGCTGACAGAGCAATTAAACTTAAGACCCAT10.6944444444444444No Hit
AAACTAACCTGTCTCACGACGGTCTAATCCCAGCTCACGTTCCCTATTAG10.6944444444444444No Hit
CAACGCAGAGTACTTGGGAAGCAGTGGTATAAACGCAGAGTGCTTCCCAT10.6944444444444444Clontech SMARTer II A Oligonucleotide (95% over 23bp)
GTTCAAAGCAGGCCCGAGCCGCCTGGATACCGCAGCTAGGAATAATGGAA10.6944444444444444No Hit
ACACGGGAAACCTCACCCGGCCCGGACACGGACAGGATTGACAGATTGAT10.6944444444444444No Hit
GTATAGGCACTTTGCTGGTATTATTTAATCCCCACAGCTAGTTCTCAGAG10.6944444444444444No Hit
CGGCAGGTCCAGCCCGCCTTCGCCGTGAAACACCTCTTTGCCCGAGACCG10.6944444444444444No Hit
TTGCTGCCGATCAGGTTCACCTCCCACTTCCACTGCCGCGCGCGCTGGTT10.6944444444444444No Hit
TTGTACAACTTTTACTTTCTACTCTCAATATTATAAATATTGTTGAAACC10.6944444444444444No Hit
GTGCTGTGGGGCGAGCCCGGCACCAACGGCCAGCATGCCTACTTCCAGAT10.6944444444444444No Hit
GGAGAGGGCAGAGGGAGGGGCCTGTCCGCCCTCTTTCCCCCCAGAGCTAC10.6944444444444444No Hit
AATACAGACCGTGAAAGCGGGGCCTCACGATCCTTCTGACCTTTTGGGTT10.6944444444444444No Hit
AGCAGGGCGAGGCGGTGCGAGCGACGCCGGGACGCGGACGTCGGCACGGC10.6944444444444444No Hit
ACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCTATCA10.6944444444444444No Hit
GGGCTAGGGCATTTTTAATCTTAGAGAGAAAGCCTATAATACATGCGCCC10.6944444444444444No Hit
GTCCTGTATTGTTATTTTTCGTCACTACCTCCCCGGGTCGGGAGTGGGTA10.6944444444444444No Hit
ACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTG10.6944444444444444Clontech Universal Primer Mix Long (96% over 26bp)
GATGTATTTTTCACCCAAGAAATTTCGGATTTCAACAAGAGACCCATTCT10.6944444444444444No Hit
TACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTAC10.6944444444444444Clontech Universal Primer Mix Long (96% over 26bp)
GGCTAGCCATATGTAGAAAGCTGAAACTGGATCCCTTCCTCACACCTTAT10.6944444444444444No Hit
GGCATCGCTCTCGTTCAGTCTGACGTTCGTGGTGATCCTGCTGATTGGGC10.6944444444444444No Hit
CTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAGGC10.6944444444444444No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGCTGTCTCTTATAC10.6944444444444444Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GCTTCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTT10.6944444444444444Clontech Universal Primer Mix Long (96% over 26bp)
CTATTCAACTCCTCAAGGCCCAGGAACTATCGTGGAAGAGGTGGGCGTAT10.6944444444444444No Hit
GCCTGACCCGTGCGCTGGATGCCACCGGGGAATTCCCGCCGATGATGCTG10.6944444444444444No Hit
GGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGC10.6944444444444444Clontech Universal Primer Mix Long (96% over 25bp)
GTGCAAGATCAGAGCCCCCAAAGCAGAGGACTCTCTCTGCCCAGTCCCTG10.6944444444444444No Hit
GGATACATGTACAGAATGTGCAGGTTTGTTACATAAGCATACATGTGCCA10.6944444444444444No Hit
TCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCC10.6944444444444444No Hit
GCTCAGCTAATTTTTAAAAAATATTTTTAGTAGAGACAGGGTTTCGCCAT10.6944444444444444No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTGCGTTGATACCACTGCT10.6944444444444444No Hit
AGCATGATGCCTCCAGATTTGTTCTTTTTTCTTAGTCTGGATTTTCCTAT10.6944444444444444No Hit
GCTGAGGAGCCAATGGGGCGAAGCTACCATCTGTGGGTTTATGTCTGGAC10.6944444444444444No Hit
GCGGTGTGCCAGTTCGCTGAACTTGGCCAGTTCCTGCGGGTCGACGTTGG10.6944444444444444No Hit
GAAGTGCAAATGTCAATTTCACTAAACAAAAGCTATTAGAAGTAAAGCAG10.6944444444444444No Hit
TTCATAGCGACGTCGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATCAT10.6944444444444444No Hit
GAAGAGCTGAAGGCACTCGTGGAATAGCTTGAAGCTGATCTCCTCATCTT10.6944444444444444No Hit
GCAGATGCTAACTGTTCTTCTGTCATGTCTTCTACGAAGACAGTTTTGGC10.6944444444444444No Hit
GCTGGCATTACAGGCGTGAACCACTGTGCCCGCATGAGAACGATGTAACG10.6944444444444444No Hit
ATGTAACTTCTGGACTGATAGATCAGGGGTTGATAGTCTTGTCTGGTGTA10.6944444444444444No Hit
TCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGA10.6944444444444444Clontech Universal Primer Mix Long (96% over 26bp)
CCCCATGGTGACCACGGGTGACGGGGAATCAGGGTTCGATTCCGGAGAGG10.6944444444444444No Hit
CAGCGGCCCATGCCACAGGTCTTGACCACTCGTTTTCTTTGTGGTTTTTG10.6944444444444444No Hit
CTGTATTCGTACTGAAAATCAAGATCAAGCGAGCTTTTGCCCTTCTGCTC10.6944444444444444No Hit
GGCGTAGAGGCAGCGCCGTGCTGTGGGGATGATCTGGCCCCCTCCGCGGT10.6944444444444444No Hit
GATGTCGGCTCTTCCTATCATTGTGAAGCAGAATTCACCAAGCGTTGGAT10.6944444444444444No Hit
ATTGTTATTTTTCGTCACTACCTCCCCGGGTCGGGAGTGGGTAATTTGCG10.6944444444444444No Hit
CGATGATTCCATTCGATTCCATTCGATGATGATTGCATTCGAGTCCATGG10.6944444444444444No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAGTTTTTACC10.6944444444444444No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG10.6944444444444444No Hit
GATCTATTGAAAGTCAGCCCTCGACACAAGGGTTTGTCTACGAATGGTTT10.6944444444444444No Hit
CCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGG10.6944444444444444No Hit
CGATAGAAGCGCGGCGCCTTTTCCAGCACCGCGACCGAGGCGCCGCCCCG10.6944444444444444No Hit
GGAGATGGAGACCCTTCTGTACAACGTGGTGAAACTCCGTCTCTACTAGA10.6944444444444444No Hit
TCCCATGACCCGCCGGGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCG10.6944444444444444No Hit
ATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGAG10.6944444444444444Clontech Universal Primer Mix Long (96% over 26bp)
GTGTATAAGCATATCAATATTAAAAAGCAAGCAAGCAGAATTTGGAATTC10.6944444444444444No Hit
ATTATGAGGTGCTGGTGCTGGGTGGGGGCAGTGGCGGAATCACCATGGCT10.6944444444444444No Hit
GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT10.6944444444444444Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GCATTTAACAGCAAAGGTTTAAAAATTGAGACAGCCCTGATGTCAGCTAC10.6944444444444444No Hit
CGGGAGGGCGCGTGCCCCGCCGCGCGCCGGGACCGGGGTCCGGTGCGGAG10.6944444444444444No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTGTTTTTTTTTTTTT10.6944444444444444No Hit
GGAAATTGTCCACCTTTAAGGGTTAGTGGGTGCGCGATGGTCTGAATGTA10.6944444444444444No Hit
CTGATGTGAAGTGCTGTCTGTCGTAGAAGTCACTCTGAGGTTTCTGAGCA10.6944444444444444No Hit
GTTCTGTTTCTCTTCAGGATGCAGAATGGTACTGGGGGGATATTTCAAGG10.6944444444444444No Hit
CCCACAGATGGTAGCTTCGCCCCATTGGCTCCTCAGCCAAGCACATACAC10.6944444444444444No Hit
GGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACCC10.6944444444444444Clontech Universal Primer Mix Long (96% over 25bp)
AAAACCAATACAAGGGCAATGCTTTTAGATTAAAATGAAGTTGACATAAA10.6944444444444444No Hit
CTATAGTGCAGAGTAATGCCATCACTGGGCACTGCGAATGCCATGACTGA10.6944444444444444No Hit
ATTCAGCACCATGCGGACGAGCTCCGCCCCATGGGCCCGTCACCCCGACA10.6944444444444444No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCTGTCTCTTAT10.6944444444444444No Hit
CTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGC10.6944444444444444Clontech Universal Primer Mix Long (96% over 26bp)
TGGAAAAGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA10.6944444444444444No Hit
GGTGAGCTCGGCCTGCCAGGCGGGAGTGCCCGGCACCGTGGGATCGTCGT10.6944444444444444No Hit
ATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGA10.6944444444444444No Hit
GTACATGGGAAGCAGTGGTATCAACGCATAGTACATGGAAAGCAGTGGTA10.6944444444444444Clontech SMARTer II A Oligonucleotide (96% over 25bp)
GCCAGGGCCAAGGGGTCCTCAGGTCCGCTTCTGGGAAGGGACAGCCTTGA10.6944444444444444No Hit
CTGTTGTGAAGTGCTGTCTGTCGTAGAAGTCACTCTGAGGTTTCTGAGCA10.6944444444444444No Hit

[FAIL]Adapter Content

Adapter graph