FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003625800

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003625800
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences144
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT64.166666666666666Clontech Universal Primer Mix Long (96% over 26bp)
GATTCCATACACTGATCGTAACTGAATCAGACTTTCCAATATACCTAAAA32.083333333333333No Hit
TGCTGGCGGTGATGCTGGGCGTGGCGCTGGCGTTCTCGGTGCAGCTGATC21.3888888888888888No Hit
TCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGA21.3888888888888888Clontech Universal Primer Mix Long (96% over 26bp)
ACTTAAATATCCCAGGCTAACATCTTACTTGTCAAGAATTTTCTGCTAAA21.3888888888888888No Hit
CCTAAGATTTGATTCAGGTTGTCTGAAACCAGGCGCCATGACCCAGATCT21.3888888888888888No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA21.3888888888888888Clontech SMARTer II A Oligonucleotide (100% over 25bp)
AGTTACGCGACCCCCGAGCGGTCGGCGTCCCCCAACTTCTTAGAGGGACA21.3888888888888888No Hit
ATATTGAGGCACTGAAAGAAACTTCCCAAACAGCCTAAAAATTCTTCTTT21.3888888888888888No Hit
GTCTGATTTAGGAATGTGCTGAGGAGCTTAGCATTTTCCGGGCTCAGATC21.3888888888888888No Hit
GCAAACATTATGATGTTCTATTGTCTTGCTGAATTCTTTATTATAACACT21.3888888888888888No Hit
CCGGTGAGGAGCGCGAGGGCCGAGGCAGGGCAGGAGATGGAGGGAGAGCC21.3888888888888888No Hit
GCTATTCCCAGATCAAGATTTGGTGGAAGGAGACCATGACAGATGACAAA21.3888888888888888No Hit
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC21.3888888888888888Clontech SMART CDS Primer II A (96% over 26bp)
GTATCAACGCAGAGTACATGGGGCTCAGCATTTGGGGACGCTCTCAGCTC21.3888888888888888No Hit
GTCTTAAGCTCGGGCCCCCTGGGCGGTTCTGATAACGAGTAATCGTTAAT21.3888888888888888No Hit
CATGCACCCGCGCAGTCTCCGGAGGTCGACGACGACTTCGCATCGACCGA21.3888888888888888No Hit
CTCCCAATTAATCTTTCCATTTTCGTCTGCGTTTAGTAAATGCGTTAACT21.3888888888888888No Hit
CATAAGACTGTTGTGGCAGTTGGACTTTATGTGATAGACATTACAATGCT21.3888888888888888No Hit
CAGCTACTCAGGAGGCTGAAGCAGGAGGATTGCTTGAGCCTAGGAGGACA21.3888888888888888No Hit
AAAAAAAAAAAAAAAGTACTCTGCGTTGATACCACTGCTTCCCATGTACC21.3888888888888888Clontech Universal Primer Mix Long (96% over 26bp)
CCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTTCCATGTACTC21.3888888888888888Clontech Universal Primer Mix Long (96% over 26bp)
GCCCGGACACGGACAGGATTGACAGATTGATAGCTCTTTCTCGATTCCGT21.3888888888888888No Hit
GGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACCTGTCT10.6944444444444444No Hit
GTATAAAATCAGGCAGTTTTTGATCACGTTTATTGTAAGCCGTCAGCATC10.6944444444444444No Hit
GCCGCGTGGCGCGCGACGTGATCCTGCCCCTGGCGCGCCACGGGCTGATG10.6944444444444444No Hit
ACTTCTGATGGTTAACTTCAAAGTTAGGAGTTGTTCCACCAGAGGATTGA10.6944444444444444No Hit
GTCCTGGAAACTGTTTAATTAGAATTTAAAAATGAAGTCGGACTTTGTTC10.6944444444444444No Hit
CACTGGAATTTTGAGGGGACACATACATTCAGACCATCGCGCACCCACTA10.6944444444444444No Hit
CTGCTCGGGCGCTACACCTTCGCGCTCGGCAGCAACGAGGAGGCGGTGCG10.6944444444444444No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT10.6944444444444444No Hit
GTACTTTTTTTTTTTTTTTTTGGGTTGATACCACTGCTTCCCATGTCTGT10.6944444444444444No Hit
GGGATTTACAGAACCTCAAAAACTGTATAACTGTCTGTACACTTAGATTG10.6944444444444444No Hit
CAACAGAGGCAGGTCTTTCCCTGATGCCAGAGGCCTGTGTGGGCTGGCTG10.6944444444444444No Hit
TGAGAAAGTCACCCAGCTGCCGGGGCCCATTCGGGAGTTCCTGGACCAGT10.6944444444444444No Hit
GGAAGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAATTAAA10.6944444444444444Clontech Universal Primer Mix Long (95% over 21bp)
CCGGCACCTCGGAGACCCACCGGCCGGCGCCTCGGTCGTCGACCCCACGC10.6944444444444444No Hit
GTGGTGCCCATACCTCAAATACATTAAATTTAAACATTTCAAACAAAAAA10.6944444444444444No Hit
CTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTCAGCTTTGCAACC10.6944444444444444No Hit
CCGCCGGGCAGCTTCCGGGAAACCAAAGTCTTTGGGTTCCGGGGGGAGTA10.6944444444444444No Hit
ATCACGGGATGCTGAACCCCACTAGTCCCTCTAATAAGGTGCGGGACCCC10.6944444444444444No Hit
TCCAATTAGGTGCATGAGTAGGTGGCCTGCAGTAATGTTAGCGGTTAGGC10.6944444444444444No Hit
ATCATGTGCAGCATCATCGGCGGGAATTCCCCGGTGGCATCCAGCGCACG10.6944444444444444No Hit
CGTCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCT10.6944444444444444No Hit
TCCCTACGCATCCTTTACATAACAGACGAGGTCAACGATCCCTCCCTTAC10.6944444444444444No Hit
CTGTTACTCTGCTCCTTTCTAAGTTGATATCCAGTTTATTATCTGCTCTG10.6944444444444444No Hit
GGACATCTAAGGGCATCACAGACCTGTTATTGCTCAATCTCGGGTGGCTG10.6944444444444444No Hit
GCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAG10.6944444444444444Clontech Universal Primer Mix Long (96% over 26bp)
GTCCTAAGGCGAGCTCAGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGG10.6944444444444444No Hit
CTAGTTGAATAGATAGCCTGTCATTAAGCACCTCTTTTCATATTATGAGG10.6944444444444444No Hit
CGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAAAAATGGTTTTA10.6944444444444444No Hit
CCGTCATGGGTGCTGAAATCCGGCATGTTCTTGTCACACTGGGTGAGAAG10.6944444444444444No Hit
CTCCAAGCTGGTGCCGGCCGAGGAGGTGGAGGCGGCGGCAGCGCAGCAGT10.6944444444444444No Hit
GCGTATTCTCACTCATAAATGGGAGTTGAACAATGAGAACACATGGACAC10.6944444444444444No Hit
TCACCATGGTAGGCACGGCGAATACCATGGTGACCTGGGGTGACGGGGCA10.6944444444444444No Hit
GCGTCTGAGAGGTGGTATGCAGATCTTCGTGAAGACCCTGACCGGCAAGA10.6944444444444444No Hit
ATCATACTCTTTACTCTTCTCCTGATACTGAGAGTGGTATTCTTGCAGTT10.6944444444444444No Hit
CATGGAAGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAA10.6944444444444444Clontech Universal Primer Mix Long (95% over 21bp)
GGTCTCAATCTCCTGACCTCATGATCCACCCGCCTCAGCCTCCCAAAGTG10.6944444444444444No Hit
ATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTA10.6944444444444444Clontech Universal Primer Mix Long (96% over 26bp)
GGCCCGGTTCCCGAGGGGCGGGCGCTGGTCCGCATCCCGCGCGACAGCGT10.6944444444444444No Hit
CACTGTCGCCCCCCCGCCTCACCGGGGACAGTGCCAGGTGGGGAGTTTGA10.6944444444444444No Hit
CCGTTTTTATTTCTTATTTCACGGTATAAGCTTCTATGGCGAAAGACAGT10.6944444444444444No Hit
ATTGTGAAAATGACCGTACTGCCAAAAGCAATCTACAAATTCAATACAAT10.6944444444444444No Hit
TTCTACACCAGATGGAATCACACTTGCCGTGGGACGACCAGATGAGGACA10.6944444444444444No Hit
CAATGCGAATGGCAACCGCGCCCGCCTGTTCTGCCGCTAATGCCATGGCG10.6944444444444444No Hit
CTAGATAACCTCGGGCCGATCGCACGCCCCCCGTGGCGGCGACGACCCAT10.6944444444444444No Hit
GATCAAAACCAACCCGGTCAGCCCCTCTCCGGCCCCGGCCGGGGGGCGGG10.6944444444444444No Hit
GGAAGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAGTA10.6944444444444444Clontech Universal Primer Mix Long (95% over 21bp)
GAACTGGCTACCGTTCGGACTATTTGTAGTCATGTACAGAACATGATCAA10.6944444444444444No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACCTGTCTCTTATAC10.6944444444444444Clontech Universal Primer Mix Long (96% over 26bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA10.6944444444444444No Hit
ACACTGGTGTGACGACTCTCTGGGAATCTCACACATCACTCTTTCCTAGC10.6944444444444444No Hit
GGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACG10.6944444444444444Clontech Universal Primer Mix Long (96% over 26bp)
ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAAAAAAAAAAAAAAAA10.6944444444444444Clontech Universal Primer Mix Long (95% over 22bp)
TTTCTTTTCTTTTCTTTTTTTTTTTTTTTGAGACAGAGTATCGCTCTGTC10.6944444444444444No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG10.6944444444444444Clontech Universal Primer Mix Long (96% over 26bp)
TCGTGAGACAGGTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGT10.6944444444444444No Hit
CGCAAAAAAAAAAAAAAAAAAAAAAAAAAGTACTCTGCGTTGATACCACT10.6944444444444444Clontech SMART CDS Primer II A (100% over 22bp)
CCTTTATAACCTTTATTAAGGAGTCAGTTAATGCTTCAAGAAAACCTTGT10.6944444444444444No Hit
CGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAAAAAGCTTTTTA10.6944444444444444No Hit
CTCTCCGGCCCCGGCCGGGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAG10.6944444444444444No Hit
GATCTATTGAGAGTCAAACCCTTGTGTCGAGGGCTGACTTTCAATAGATC10.6944444444444444No Hit
GCCACAACAGAATAAAGCAGCCTGATTGAAAAAAAAAAAAAAAAAAAAAA10.6944444444444444No Hit
CCATCAGCGCCTGAGCCTGCGCGAGCGCGTTGGCCAGAAGCTTCGGATGA10.6944444444444444No Hit
GCCGCTACCATGGCCGCATGAACACCGCGACCCACGCCAACGTCGACCCG10.6944444444444444No Hit
GCCCCAACATCCTCACCGACATCACCAAGGGTGTGCAGTACCTCAACGAG10.6944444444444444No Hit
CCCCCAGCCTGTGCGAGGACGGTGCGGTGAGAGTGGGGTGGAGGGAGCTT10.6944444444444444No Hit
GATATTCTACTCACGCCCAAATCTATTCTAATACCAAAAATATTGCAGTT10.6944444444444444No Hit
GGCATTGTGGAAGAAACAAATGTCTGTTTTCTTCTTTTGTAGCAATGAGC10.6944444444444444No Hit
GATATCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTGTACATGG10.6944444444444444Clontech SMART CDS Primer II A (96% over 25bp)
TCCGGGGACAGTGCCAGGTGGGGAGTTTGACTGGGGCGGTACACCTGTCA10.6944444444444444No Hit
CCAATGGATCCTCGTTAAAGGATTTAAAGTGGACTCATTCCAATTACAGG10.6944444444444444No Hit
CATCGAAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCGCCACGGG10.6944444444444444No Hit
GAATGGAATCATCGCATAGAATCGAATGGAATTATCATCGAATGGAATCG10.6944444444444444No Hit
GTGCAGAAGCTCTTTAGTTTAATTAGATCCCATTTGTCAATTTTGGCTTT10.6944444444444444No Hit
AGCTAGGCCACCAATCAGATTAAGAAATTCTGAGAAATCCAACAGTGATG10.6944444444444444No Hit
GCCAGATGAACCTCCAATGGTATTCAAGGCTCAGCTGTTTGCGTTGACTG10.6944444444444444No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT10.6944444444444444No Hit
GTACATGGGTGGCTCACGCCGGTAATCCCAGCACTTTGGGAGGCCGAGGC10.6944444444444444No Hit
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG10.6944444444444444No Hit
GTACTTGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA10.6944444444444444Clontech Universal Primer Mix Long (96% over 26bp)
ATGAGCATGATGGACGTCAATTCCTGGGAAGCCGTAGAGATCGCCCTGCC10.6944444444444444No Hit
CGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCC10.6944444444444444Clontech Universal Primer Mix Long (96% over 26bp)
GCTTCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCATT10.6944444444444444Clontech Universal Primer Mix Long (96% over 26bp)
GTACTTTTTTTTTTTTTTTTTGCGTTGATACCACTGCTTCCCATGTCTGT10.6944444444444444Clontech Universal Primer Mix Long (95% over 21bp)
ATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAA10.6944444444444444Clontech SMARTer II A Oligonucleotide (100% over 25bp)
CGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCTGTCTCTTAT10.6944444444444444No Hit
GTATCAACGCAGAGTACATGGGCGGCTCTTCCTATCATTGTGAAGCAGAA10.6944444444444444No Hit
CGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA10.6944444444444444No Hit
GCCAAGCACATACACCAAATGTCTGAACCTGCGGTTCCTCTCGTACTGAG10.6944444444444444No Hit
CAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAAA10.6944444444444444No Hit
CTCTAGATAACCTCGGGCCGATCGCACGCCCCCCGTGGCGGCGACGACCC10.6944444444444444No Hit
GGACTGGTCTTTCTATCTCTTGTACTACACTGAATTCACCCCCACTGAAA10.6944444444444444No Hit
GCCCTCCCGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGCCGGGACCG10.6944444444444444No Hit
CAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT10.6944444444444444No Hit

[FAIL]Adapter Content

Adapter graph