FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003625843

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003625843
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences45
Sequences flagged as poor quality0
Sequence length100
%GC53

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCCTCGCCGCGCTCGCCATCGCTTTCCTCGCCGCCAACCGCATCACCGCC36.666666666666667No Hit
AACGAGCGCAACACCACTTACGAGCAGGTGACGACGGGCTTCGGCACAAC36.666666666666667No Hit
GGTGAGCACCGTCCCGACGATGGGGAACATCTTGTAGCGACCGGTCTTGG24.444444444444445No Hit
GGTAGCTGCCAATCAGCCGTGCCCTCCATCTCCCGTCTGCTGTGCACATG24.444444444444445No Hit
GGTTCAGGCCGAGCCGCTGGACGCGCGGACCGATGCCGCGGATGTCGAAC24.444444444444445No Hit
GATTTCTTTCCTGAATCCCCAAACTCACACGTTAAACTGCCTGCTTGACC24.444444444444445No Hit
TTTTAGACCAATATCCCTGATGAACATCAATGCAAAAATCCTCAATAAAA12.2222222222222223No Hit
GGGAACACTGGAATTTCTTCAAAAACAATGGGCAAACGATGGTAACTCCC12.2222222222222223No Hit
AAGGGCTGGGATTACAGGCGTGAGCCACCACGGCTGGCTTTGATTTATCA12.2222222222222223No Hit
GCTTCTTAGACTACTAGTAATTATTTGGCATGTTTTATGCCTTTTAATAA12.2222222222222223No Hit
GAGATGGGGGTTTCACCTTGTTGCCAGACTGGTCTTAAACTCCTGACCTT12.2222222222222223No Hit
GCCTTGCATACGCAAAAGTTCAACTGCTCTATTGCCTTCGGGGAAGACGG12.2222222222222223No Hit
CTCATTAATAGCTAATAATAAATAAAATTGTAATTGCCCAACACCTAGTC12.2222222222222223No Hit
CCCGCGCTCGATCGGCTGGCGCTCGGCGAGGAGGTCGCGCAATCGCTCGG12.2222222222222223No Hit
GTTCGTCGAGCAGCAGCACGGCGGGTCCGGGGAGCAGCGCGCGGGCGACC12.2222222222222223No Hit
CACCCGAGGTCAGAAGTTTGAGACCAGCCTGGGCAACATGGCGAAACTCT12.2222222222222223No Hit
GGGAGGATAACCTGAGCCCAGGAGGTTGACGCTGGAGTAAGCTGAGATCA12.2222222222222223No Hit
GATTCAATTCCATTCCATTCCATTCCATTACATTCCATTTCATTCCAACC12.2222222222222223No Hit
AATACTGACTTCTTTGCTTCTCTTTTCGCAGCTCTCCCTTAGACCAGTCT12.2222222222222223No Hit
CCGCGGAGGGGGCGAACTGGGTTCCGGCCCTCGGAGGCTGACGGAAGGCG12.2222222222222223No Hit
CGGCGACTCGGCGGAGAACGGGATCTCCCGCAGGTCGCGCGGCAGGCCGA12.2222222222222223No Hit
CCCATGGCCTGCATGGTTTTACAGCCCACTGTTGCAGCAGTCATGACAGC12.2222222222222223No Hit
CTGGAAAATAAACTCCACATGGACATGGATCTATGTTTTGATCACAATAT12.2222222222222223No Hit
CGCGCAGCAAGGCCCGGCACTGGCAAACTACGCCGCCAAGACCCTGGGCG12.2222222222222223No Hit
CTGTCGGGATACGTCGCAACGCTTGCAGGAATTGCCAGCCAGGACGATCA12.2222222222222223No Hit
ATGTGAATAAAGGTAGAAGGGATGGACACACTTTTGCATATATTAGCCTC12.2222222222222223No Hit
CCCATGGCCTGCATGGTTTTACAGCCCACTGATGCAGCAGTCATGACAGC12.2222222222222223No Hit
CTCGGCAGCCTCGTCGGCGGCGGGAGCAGGCTCTTCAGCCTTCTTCTCGG12.2222222222222223No Hit
GGTGGGAAGGGAGATGGTGCAATGAAAATGATAGCATTCATGGGGAAAAT12.2222222222222223No Hit
GGGAGATATACCTAATGCTAGATGACGAGTTAGTGCGTGCAGCACACCAG12.2222222222222223No Hit
GTATAAAATGGTGGAGATGGAAAAAATGACTCTTAAGGTCATTGCCAGAT12.2222222222222223No Hit
CAAATGATCCACCTGCCTCAGCCTCCCAAAGTGCTGGGATTACAGGCATG12.2222222222222223No Hit
GGTAATTCCCATGCATATCAATATTGTTAAGTGGGGTACTTTTATTTTTA12.2222222222222223No Hit
CTGCGCCTCGCTCTGTCGCCCAGGCTGGAGTGCAGTGGTGGCACAATCTC12.2222222222222223No Hit
GGTCTCAGGTGGACATGGCACCAGCTTCTTCCAAGCCCCTGCCCATGGCC12.2222222222222223No Hit
CAACGAAGGCCACAAGATGTCAGAATATCCACTTACAGACTTTACAAACA12.2222222222222223No Hit
GTTGCATTCTCAAGCCCAGGCTAGAGTAGTAGAAGCTATCCAGTGGAAGC12.2222222222222223No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)