FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003626245

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003626245
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences199
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT42.0100502512562812Clontech Universal Primer Mix Long (96% over 26bp)
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT31.507537688442211Clontech Universal Primer Mix Long (96% over 26bp)
GGCTTAATTTGACCCAACACGGGAAACCTCACCCGGCCCGGACACGGACA31.507537688442211No Hit
GAGCTCTCACAGTGTAATGTGGACTAAAGTTATGAACAACAAACAATTCC31.507537688442211No Hit
AGAAAGAATCCAGGGCAAGTCCATAGAGTAAAGTGAAAGCAAGTTTATTA31.507537688442211No Hit
CACCCGACCCGTCTTGTAACACGGACCAAGGAGTCTAACACGTGCGCGAG21.0050251256281406No Hit
ATGGTCGGAACTACGACGGTATCTGATCGTCTTCGAACCTCCGACTTTCG21.0050251256281406No Hit
TCACCATCAACTCTACCATCACCATCACCATCAACTCCACCATCACCATC21.0050251256281406No Hit
GGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCATTTGCC21.0050251256281406No Hit
CCATAGATTCCTCTTCAGGAAAATGTCCTTCCCCACAAAAGCAAATTCAA21.0050251256281406No Hit
CTTTAAATCCTTTAACGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCA21.0050251256281406No Hit
GATGGGGTTTCGCCATGTTGGCCAGGCTGGTCTTGAACTCCTGACCTCAG21.0050251256281406No Hit
GCTACTCAGGAGGCTGAGGTGGGAGGATTATTTGAGCCCAGGAGGCAGCA21.0050251256281406No Hit
CTGAAGGCCTTTGACGTTCTTAGAATCTCCGGAGGATGATGAAGAGTTAC21.0050251256281406No Hit
GGACACGACGTCGGCACCCTCGTCACGAAGACTCACGACGTTGCCGACGA21.0050251256281406No Hit
CCCTATTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAAT21.0050251256281406No Hit
GCCAGAGGCTGTTCACCTTGGAGACCTGCTGCGGATATGGGTACGGCCCG21.0050251256281406No Hit
CCTTACGTGGCTCACTCACCCTTCCACCCGCCCCAGGATCCACTGCAGGC21.0050251256281406No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC21.0050251256281406Clontech Universal Primer Mix Long (96% over 26bp)
CTTTCTACTGTTGGCATCAAATGGCTAGAAATCTCCACTTGCAAATTCCG21.0050251256281406No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTATTTTTTTTTT21.0050251256281406No Hit
ATGGTAACCCGCTCAACCCCTGCGGCGACCCGCCCGGTGGGGCAGGGGCG21.0050251256281406No Hit
TGCGTGCATTTATCAGATCAAAACCAACCCGGTCAGCCCCTCTCCGGCCC21.0050251256281406No Hit
GAGCAGTGGTCTCTCGCCTTCCATCACTCGGGCCTGACCGACACCGCGCG21.0050251256281406No Hit
CTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGAT21.0050251256281406No Hit
CTATCTGCCACTGACACCTCAAGCACCATTGGATCTGCTGGGTCATATGG21.0050251256281406No Hit
GACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTC21.0050251256281406No Hit
AGAGATGAAAAAGGAGATCAGGGCCGACGCCAGGGAGATGGAGAGAGCCG21.0050251256281406No Hit
GCACTAAGCGCACGGCAATGAAAGGAAGGGCAATATAGAAAAGCAGGCTA21.0050251256281406No Hit
GTAACTGTGTGTGGCAAAGCCAAGATATCCTACCATTCCAATAAAAAAAA21.0050251256281406No Hit
TCCTCGCGTTCACCGGGTTCCCCGAGGGCCTCTGGCAGCAGATCCTGTCT10.5025125628140703No Hit
CCGGCCGAACCGGGTAGACCAGCCGTCGCTACACCGGAACCGGCGGCGGC10.5025125628140703No Hit
ACTCTTTTTGTAGAATCTGTTAGTGGAAACTTGGAGTGCTTTGAGGCCTA10.5025125628140703No Hit
CATTCTCGCCGAGCAGCAGCTATCCGGACCGAGTGCAGGCGTCGACGACC10.5025125628140703No Hit
GGATGGTCTCAATCTCCTGACTTCGTGATCCACCTGCCTCGGCCTCACAA10.5025125628140703No Hit
GTCAGGGCTTCCCTGAAATCTGCCTCTCTCTGTCATTATGCTTGGCCGGG10.5025125628140703No Hit
GGTCTTTTTGCAGGCTGGAGCCGGCGATAGCGATGGTGGCCCGGTCGGCG10.5025125628140703No Hit
ATTTAGGAATGCCCATTTGGTGAAATTTACCAGTTCCTCTAGATATCACA10.5025125628140703No Hit
CTCAATGCTTCCACTCGATTCCATATGATGATGACTCCATTCGATGAAAT10.5025125628140703No Hit
CGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGA10.5025125628140703No Hit
CTAAGACCCTGTTCAACAATTGTTACAGTGCATGATATGACATTTTAATA10.5025125628140703No Hit
GGTTCCCCACGAACGTGCGGTGCGTGACGGGCGAGGGGGCGGCCGCCTTT10.5025125628140703No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG10.5025125628140703Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GTCAAGATCCGCGATGATCGCACCGGGTCGCAGGTCAAAAACCTCACCGA10.5025125628140703No Hit
GATCTTGGCAGCGACCGCGCGCAGCGCCTCGGTCGCCGCGAGCGTGCGGT10.5025125628140703No Hit
GACCATAGCACAAAGAATGGTGAGGAGCACTGTGTGGGGAGTCCCCTCCT10.5025125628140703No Hit
GTCAATCCTGTCCGTGTCCGGGCCGGGTGAGGTTTCCCGTGTTGGGTCAA10.5025125628140703No Hit
GGTCCGCCCCCGGGGCCGCGGTTCCGCGCGGCGCCTCGCCTCGGCCGGCG10.5025125628140703No Hit
CATCGAGGGGGCGCCGAGAGGCAAGGGGCGGGGACGGGCGGTGGCTCGCC10.5025125628140703No Hit
CGGTTCCTCTCGTACTGAGCAGGATTACCATGGCAACAACACATCATCAG10.5025125628140703No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG10.5025125628140703Clontech Universal Primer Mix Long (96% over 26bp)
CCGCGCTTCTGTGCGGCCAGCGGGGTCACCCACGGCTGCTGACGCGCCAC10.5025125628140703No Hit
CTGGATGTATCACTCGACGTTGGCGCGGACCGAGACTCGGGGAATGAGCA10.5025125628140703No Hit
CTCCAGGCCAGCACGTTGAAGGCCGCCACGAGCACCACCCCGCTCGCGAA10.5025125628140703No Hit
GGGGTACGTTGCGGCCGGTCACGAGCGAATCCTGGTAATACCGGGTCCTA10.5025125628140703No Hit
GGAGTGGAGCCTGCGGCTTAATTTGACCCAACACGGGAAACCTCACCCGG10.5025125628140703No Hit
GGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCTGTCT10.5025125628140703Clontech Universal Primer Mix Long (96% over 25bp)
CTCACGATCCTTCTGACCTTTTGGGTTTTAAGCAGGAGGTGTCAGAAAAG10.5025125628140703No Hit
TCATTATGTTGCCCAGGCTGGTCTCAAACTCCGAGGCTCAAACGATCCTC10.5025125628140703No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA10.5025125628140703Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GCACTGTCTTGCTCAGAGGCCGGCACTCGCCCACTGTGACGATGTCACCG10.5025125628140703No Hit
CCTATACGCCGCCGCTTGTGCTGCAGCCATGTCTCTAGTGATCCCTGAAA10.5025125628140703No Hit
CCCGTCCACTCTCGACTGCCGGCGACGGCCGGGTATGGGCCCGACGCTCC10.5025125628140703No Hit
GCGGACAGATGCCTTGGGGATCCTGGATCACCTGTGAGGAGGTCGTAAAC10.5025125628140703No Hit
GCCACAAAGCTTCACAGACAGCCCCCATTACTTCAATCAAGCCCAAATTT10.5025125628140703No Hit
AATGTGAAAGTTGCAGTAATCTGTCTTTTATTTTGGATGGTAGATAAATT10.5025125628140703No Hit
GAATCATCGAATGGACTCGAATGGAATAATCATTGAACGGAATCGAATCT10.5025125628140703No Hit
GTCCTAAGGCGAGCTCAGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGG10.5025125628140703No Hit
GGACCGGGTGGTCATTGTGGATCGCGGAACCGTGGTGGCGCAGGGAACTC10.5025125628140703No Hit
GGCACGCCTGAACCTGGGCGAGACGCTGGCCAAGCGCGTGGTGTCCACCG10.5025125628140703No Hit
AAAGTTGATAGGGCAGACGTTCGAATGGGTCGTCGCCGCCACGGGGGGCG10.5025125628140703No Hit
GGTCCGTAGCGGTCCTGACGTGCAAATCGGTCGTCCGACCTGGGTATAGG10.5025125628140703No Hit
ATATAGCGCCGTCAACATCTTTTCCCCATCTGCCTGTTTCCTCCTTCCCT10.5025125628140703No Hit
GAGCAGTGGTCTCTCGCCTTCCATCACTCGGGCCTGACCGACCCCGCGCG10.5025125628140703No Hit
ACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTG10.5025125628140703Clontech Universal Primer Mix Long (96% over 26bp)
CATCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAACCCCAGC10.5025125628140703No Hit
GTACATGGGGTGGTAGTTTCTTTTGCTGTGCAGAAGCTCTTTAATTTAAT10.5025125628140703No Hit
ATTCAGTGTATTATGTGATTAGGCTACTAGAACATTTACTAATCCCCCAA10.5025125628140703No Hit
GAGTTTAACTTTTCTTTTCATTCAGCAGTTTGGAAACACTCTGTTTGTAA10.5025125628140703No Hit
ATGGATAGCTGTTATCCTTTAAAAGTTGAGAAAGCCATGTTGTTAGACAT10.5025125628140703No Hit
GGGTAATGGAACAGCGTCTCTTTTCCGCAATATTGATCAGCTCAAGGAGT10.5025125628140703No Hit
GAAATGCATTATCTTACAATTCTGAAAGCCAAGGTCTAAAAATCAAGGTG10.5025125628140703No Hit
ACACAGCTGTCTCCTTAGATTCTACCATTAACATTCTATTGTACTTGCTT10.5025125628140703No Hit
ATGTATGTAATTGAGCATTTTAAAAATTATGTTTATCAGATATTCATGTT10.5025125628140703No Hit
GCACTTGGTTGCACTGGGGCATGAGCAGCTTCAAGGGGAGGACGTTGCAC10.5025125628140703No Hit
GGCGAGACCGCGCGCTACGAGTATGACGCCATGGGACGTGTTGTGCTCAG10.5025125628140703No Hit
CACATAACCCACACCCCAAACCGTTTGAATATAGCGTGCACGCGCAGGGT10.5025125628140703No Hit
CTTTATTTCATTGTGGGGAGCGGGCCGATGTCCAGCCTCAGAACTTCTGG10.5025125628140703No Hit
ATTCGGGTCCATTCGATGATAATTCCATTCGATTCTATGCGATGATTCCA10.5025125628140703No Hit
TAATTAAGCTAAGCCCTTACTAGACCAATGGGACTTAAACCCACAAACAC10.5025125628140703No Hit
GTGGGGAGCGGGCCGATGTCCAGCCTCAGAACTTCTGGAACTGCTTCTTG10.5025125628140703No Hit
GCTGAAAAGTGGCTCAAGGACCAAACTTTGAAAAAATACTTTTTTAAAAA10.5025125628140703No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGGGTGAGGT10.5025125628140703No Hit
ACGCAGGTGTCCTAAGGCGAGCTCAGGGAGGACAGAAACCTCCCGTGGAG10.5025125628140703No Hit
GGACGCCGGTGTCGAACTCAAACCAGCCGTCGGAGACGTGAGGGAGGGTG10.5025125628140703No Hit
TTACTAGAATAGGCAGATGCCATTTTTATGGACTTGCTCTCCTTTGTTTT10.5025125628140703No Hit
CTCCATGGCTGCCTCCGAGGTGGTCTGGGCCAGTGTAGCTCCTCCTACAG10.5025125628140703No Hit
ACACTTTATTTTCCCATTTTTCCTATCTTGACATGGATTTGTGACTATTC10.5025125628140703No Hit
TTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTCC10.5025125628140703No Hit
TCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGA10.5025125628140703Clontech Universal Primer Mix Long (96% over 26bp)
CATCTAGCCCTAAGGTTTCAGATAAGAGATCGTGGACCTGAATTAAAATC10.5025125628140703No Hit
CGTGATGACGTCGCGTACAAAATTGGTCAGCGGCACTTCGCTGGTGGGAA10.5025125628140703No Hit
GGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACG10.5025125628140703Clontech Universal Primer Mix Long (96% over 26bp)
GACAAGATGATTCAATGTTGGAAAGTACATGCACACACAAATAGAAAGCA10.5025125628140703No Hit
ATTGCTGGCTCTGCAGGGCTCTGATCAAGCGGATCCAAGCCATGATTCCC10.5025125628140703No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTAACACAGCC10.5025125628140703No Hit
CTCAAGCTATGCCCAAGATGACTGACAAGTCTAATTTAGTGACACCTTGT10.5025125628140703No Hit
ACTCTATACTAAGTGCCTGGCTATTACCTTCAGGGAGAGTGATCAAAGGT10.5025125628140703No Hit
ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC10.5025125628140703Clontech Universal Primer Mix Long (96% over 26bp)
GGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAGCCAGTTA10.5025125628140703No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG10.5025125628140703Clontech Universal Primer Mix Long (96% over 26bp)
CCTATTAGTCAGAAGAGAGTGGGGGCCAATGTTCAACATTCTTAAAATAA10.5025125628140703No Hit
CATACACACACACGAGTCTAAGAATGGCAAAAGCAGGCACTACAAAGAAG10.5025125628140703No Hit
CGCCCGCCCCCCGGCCGGGGCCGGAGAGGGGCTGACCGGGTTGGTTTTGA10.5025125628140703No Hit
GAACAGAAATTTGATCTGATTGTCATCAGTGAAGTGGCCTATTACTTATC10.5025125628140703No Hit
ACTGACAGCTTCCCACCTCTAAAGCATGTAAGTTCTGTGAGAACAGAGAC10.5025125628140703No Hit
CCATTAAATTCCGGATGATTCCATTCCATTGCATTCCATTCCATTCCATT10.5025125628140703No Hit
GATTAAGTCTGCTAGTGGGTGGCTGAGGGTATGGCGCCCTGCCCTGTGGT10.5025125628140703No Hit
ATCCATTTGATAGGCATATCGTATAAGTTCTTACTTATTCAGTGCCATTA10.5025125628140703No Hit
CAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATAATC10.5025125628140703No Hit
GTGGTAGTGTGGATTCCTGATTATGGCACTATCTGGACCCTCTCAATATT10.5025125628140703No Hit
GTGTTGGGTCAAATTAAGCCGCAGGCTCCACTCCTGGTGGTGCCCTTCCG10.5025125628140703No Hit
CTATAGGATGATGATTGCATTCGGGTACGTGGATTATTCCATTCCATTCC10.5025125628140703No Hit
GACCCCGCCCCGGGCCCCTCGCGGGGACACCGGGGGGGCGCCGGGGGCCT10.5025125628140703No Hit
ATCCATAAGATAGGCATATCGTATAAGTTCTTACTTATTCAGTGCCAATA10.5025125628140703No Hit
AATCCAACAATCCCACTACTGGGTGTGTACCCAAAGGAACTGAAATTAGT10.5025125628140703No Hit
GAATGGATTCTGGAGGTTGTATTTGGATTTCAGTTTTATGTTATCTATGA10.5025125628140703No Hit
AGCTTGCACAACCCCAGCTGAGCTTTCAGCAGATAAATCACAGCAGAAAT10.5025125628140703No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCCCTCGATGCTCTTAGCTGAGTGTC10.5025125628140703No Hit
GTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCAC10.5025125628140703Clontech Universal Primer Mix Long (96% over 26bp)
CACTAGAAAAGTGCACAACTTCCAGAAGGAATTCACTCTGCAGGCCAACC10.5025125628140703No Hit
TACCAAAAGCAGCCGACCATCTTTCAAAACAAGAAGAGGGTCCTGCTGGG10.5025125628140703No Hit
GCTCTAGTTTATGAAATTGTCATCATCCTTAGCAACGATCTTTGTGTTTT10.5025125628140703No Hit
GTCTGATGGTTGGTGATCGTGAGCATGACATTTTGGGTGCACGTCGTAAC10.5025125628140703No Hit
CAGCTATCCTGAGGGAAACTTCGGAGGGAACCAGCTACTAGATGGTTCGA10.5025125628140703No Hit
GATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGT10.5025125628140703Clontech Universal Primer Mix Long (96% over 26bp)
GTAAATTTCCCTCTACACACTGCTTTGAATGTGTCCCAGAGATTCTGGTA10.5025125628140703No Hit
GGCTTCAAGACACCCAAGGAGGCTATTGAGGGCACCTACATTGACAAGAA10.5025125628140703No Hit
ATATTCAAACGAGAACTTTGAAGGCCGAAGTGGAGAAGGGTTCCATGTGA10.5025125628140703No Hit
CATTTAGAGTGCTCATACAGTCTTGAAGAATGTGTGCAGTCTTCAAGTGC10.5025125628140703No Hit
GGAGGAATTAGAATACAGAATGAAAGGCTTGGTATTAGAAAGCCTGTTAA10.5025125628140703No Hit
GCCTACCATGGTGACCACGGGTGACGGGGAATCAGGGTTCGATTCCGGAG10.5025125628140703No Hit
CCTGAGCTCCGAGGAGACGACCTCGGTTGTCGTGGTGTGCTCGGCGGACG10.5025125628140703No Hit
ACTCGGGACGGTAGTCGCGCAGCACGGCGCGGAGCCGGGCGTCGTCGAAG10.5025125628140703No Hit
GGCGACAGGCCCACCTCAGCCTCCCAAAGTGTTGGGATTACAGGCGTGAG10.5025125628140703No Hit
ACCTTGTTGTCGGCGACGTCGAGCACGACGAGCTTCTGGTACGGCGTGAA10.5025125628140703No Hit
CTTCCGGGGTGAGGCTGGCGAAATCCCAGAAATTGTCGTGTGCGGTTTGC10.5025125628140703No Hit
ATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAA10.5025125628140703Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GAGAACTAGGAGGGAATAGTAGGCTCTAATTTCATCCTAGTGGAGAAAAA10.5025125628140703No Hit
TTCCGCTGCTGCTTCTTGGTCTTCAGGTTCTCCTCGTGCTTGTTGAGCCG10.5025125628140703No Hit
GCTCTTCGCCGCCGTCTGCAAGGCGCCAAGCGGCGCCGATAGCCAGAATG10.5025125628140703No Hit
CTGCTTCCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTG10.5025125628140703Clontech Universal Primer Mix Long (96% over 26bp)
GGGTGAGATAGGTATCGGGGAAGGGGAAGAAATTGCTGATCGTCCGCTCG10.5025125628140703No Hit
CTCATGCCCACCGGGTCTACTTGTGTGGACGTTACTGCGCGACGCCACGC10.5025125628140703No Hit
GTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTT10.5025125628140703No Hit
CAGCCTGAGCGGCAAGACCGTTGGTGTGCGATTCGAAGGTCCACACGATC10.5025125628140703No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCAGTAGAGTAAAAA10.5025125628140703Clontech Universal Primer Mix Long (96% over 26bp)
GTGAATCACAGTCTCTAAAGGAAGCTTTTTGAGATTTTTACACAGATGGC10.5025125628140703No Hit
GTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGGGCATT10.5025125628140703No Hit
CTTCCGAGTTCGTGCAGCAGCTGCGCGCCGACCAGGAGCCCGGCGGCAGG10.5025125628140703No Hit
ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCG10.5025125628140703No Hit
GTCTTGCCTACGCCGGCCTCGCCGACCAGCAGCGGGTTGTTCTTGCGCCG10.5025125628140703No Hit
CAGCTAGAGGACGCGAGCACGCGAGCTCCGCACCTAACTGTGCAGCCAAG10.5025125628140703No Hit

[OK]Adapter Content

Adapter graph