FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003626406

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003626406
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences92
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCATGGACTCTGCTGACGCCGAGCGCTCGGCATACATTCCGGCTTCATGT33.260869565217391No Hit
GAACTTGACTGATAACCAGTCCAATCTCTCTCAAAACACAGCAGATCTCA33.260869565217391No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG33.260869565217391Clontech Universal Primer Mix Long (96% over 26bp)
TGCCTGCTACGAACGCTCCAACGAGTACCAGCTGATTGACTGTGCCCAGT33.260869565217391No Hit
GTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAAAAAAA33.260869565217391Clontech Universal Primer Mix Long (95% over 21bp)
GACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAA33.260869565217391No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGCTGTCTCTTAT22.1739130434782608Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GATCTTGGGAGCGGGCGGGCGGTCCGCCGCGAGGCGAGCCACCGCCCGTC22.1739130434782608No Hit
CCCCTTCAGGGGCCCCTAAAGGAACTGTCAGAAAATGGGGCCCCTGAAGG22.1739130434782608No Hit
ACCGAAGATAGCTCATGTTATATCCCGCCGTTAACCACCATCAAACAGGA22.1739130434782608No Hit
ACTTCGGGAGGCAGTGACTAAGACCCTTTCCTTGCTCCCAGCTTCCTATG22.1739130434782608No Hit
GTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTAC22.1739130434782608Clontech SMARTer II A Oligonucleotide (100% over 25bp)
CCATTATTCCTAGCTGCGGTATCCAGGCGGCTCGGGCCTGCTTTGAACAC11.0869565217391304No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT11.0869565217391304No Hit
ATTTCACCTTTTCCGAAAAACTGCTTTTTAAATTTCTTGGCCAGACACGG11.0869565217391304No Hit
ATGCCCAGGTAGCCATGGATAGAGGCTAAGTGTAGACACGTGTGGCCATT11.0869565217391304No Hit
GTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGC11.0869565217391304No Hit
AATGTATGTTATCAGTAATAATTATAATTGTTATGTTAAATTATTGTGTG11.0869565217391304No Hit
GTACATGGGGGAGGAGAGGAGAGCATAGCACCTGCAGCAAGATGGATGTG11.0869565217391304No Hit
GAGTCTCGCTCTGTCACCCAGGCTGGAGTGCAGTGGTGCCGTCTCGGCTC11.0869565217391304No Hit
GGCGAAGTGAATCCGGCTGAAAGGGGCGGGCACTTGACCGGTCAGTGCCC11.0869565217391304No Hit
ATTGACTTACTATCTGAATTTAGCGTTGGTAACGGAAAGCGACCTGTAAA11.0869565217391304No Hit
CTCCCCAAGCTCCCATTTCTCCAGGGCTTGTCCCTGCGGTGTGGGCAGAA11.0869565217391304No Hit
ATATAGAATTATTCAAAACATCTTCTCTTAATCCAGAATTAGTAAAAACT11.0869565217391304No Hit
CCTCTTTTCTGGGACTGGCTTCCTTCCCAGTGGCTTAGGAACTGTCTCTT11.0869565217391304No Hit
ACAATGTATTTTAAATTTATTTGATTTTTTTTTTTCTTTTTGGCTTCACA11.0869565217391304No Hit
TTGGGAATCATGGCTTGGATCCGCTTGATCAGAGCCCTGCAGAGCCAGCA11.0869565217391304No Hit
TCATGAACTCGATCCTGGAGCGCATGTGTGCCGACGTGCTGCAGCAGACA11.0869565217391304No Hit
GTGCTGCAGCATCTTGCTACTCTTGCCAACAGTCATGATTGCTGTTCCAC11.0869565217391304No Hit
GGCTGTGGCAGTCTGCAGGTTCATCCTCGTCAGCTCGCGGGTCTCATGGT11.0869565217391304No Hit
GTCCCACACACCCCGAGGGCCTGGCAGGTGGTGTGGGCATCCCAGCCCCT11.0869565217391304No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTTGATAAC11.0869565217391304No Hit
TATCCTGACACCATTCTCTCTCCATTTACTTCTGGTGGTTACCCTGACTC11.0869565217391304No Hit
TCGCCACACAGGGTGCTCACGGCCATGCCCAGGAAGGCCGGGTCCCCTCC11.0869565217391304No Hit
GGTGAAATATGCTCGTGTGTCTACGTCTATTCCTACTGTAAATATATGGT11.0869565217391304No Hit
AGTAGCAGCAGCAGGTGCAGCTGGTGGCGGAGATGCTGCAGCTGAAAAAA11.0869565217391304No Hit
CTCGTGGACAACGATGGCCTCTACGACCCCGACTGCGACCCCGAGGGCCG11.0869565217391304No Hit
GCTCTCGCTGGCCCTTGAAAATCCGGGGGAGAGGGTGTAAATCTCGCGCC11.0869565217391304No Hit
GCGTTCATAGCGACGTCGCTTTTTGATCCTTCGATGTCGGCTCTTCCTAT11.0869565217391304No Hit
CAGGCAAATCAGTTGAGCAGTACTTAGGCAATCTTTCCTAGCAACTGTTG11.0869565217391304No Hit
GCATATGAGGTTGCTTTTCCAGATTCTCTTTTGTTTCTAGCTCGTGCTTC11.0869565217391304No Hit
AAATGTGTGAAGTTCTTGCTCTACGTCCTCCTGCTGGCCTTTTGCGCCTG11.0869565217391304No Hit
GGCGCGGGCTCCTCGAAGGGGCGGGGCGTAATCGCGCAGACGCTGCAGTC11.0869565217391304No Hit
CCTCAAGACTGGGGATGCTCTCTGGAGCTATCTTCATGATGTAGCAGCAG11.0869565217391304No Hit
GCGTTGATACCACTGCTTCCCAGTACTCCTGTCTCTTATACACATCTGAC11.0869565217391304Clontech Universal Primer Mix Long (95% over 21bp)
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCTTTTTAAA11.0869565217391304No Hit
CCTCATGGATAGGAAGAATCAATATCATGAAAATGGCCATATTGCCCAAA11.0869565217391304No Hit
GTACGAGAGGAACCGCAGGTTCAGACATTTGGTGTATGTGCTTGGCTGAG11.0869565217391304No Hit
GACCAGGAGGGTGTGGTGCTGCAGGGGCTGGGTCTTTGAAGGATACACAG11.0869565217391304No Hit
CTCTTGATATTATCATCTCCTGAGGGTCGAGAGGACGGTGGACGGGGAGA11.0869565217391304No Hit
GTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCAC11.0869565217391304Clontech Universal Primer Mix Long (96% over 26bp)
GGTTACAGAGGTAGGATATGTAACTGCTGCAATAAGCACGTAACAGCATT11.0869565217391304No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTTTAAACA11.0869565217391304No Hit
ATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTTACATTTATTG11.0869565217391304No Hit
ATGTCGGCTCTTCCTATCATTGTGAAGCAGAATTCACCAAGCGTTGGATT11.0869565217391304No Hit
CTCCTTGTAAGAAGGGGGGCAAACGCTTTTCTCACAAGTCCCTTGACACT11.0869565217391304No Hit
GCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCTTAA11.0869565217391304No Hit
GCCGGACGTGTCGCAGTTTGTGGCGCAGCACATCCAGGACACCTGTCTCT11.0869565217391304No Hit
GGCCTAGGAGGGTAGGTCATGAGGTCAGGAGTTCGAGACCAGCCTGACCA11.0869565217391304No Hit
ACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATC11.0869565217391304Clontech Universal Primer Mix Long (96% over 26bp)
GTACTTAATTCCAAGTGTTAACATGAGGTAGGGGAGAGGTCAGAGGCTGT11.0869565217391304No Hit
GATTTAACTTCATCTTCTGGCTTGCCGGGATTGCTGTCCTTGCCATTGGA11.0869565217391304No Hit
AAATAATACTGATCTCTTTCTTGTGCCTCAGCTGAACAATTTGAAACCAA11.0869565217391304No Hit
AAACCCTTGAGTTATCTCAGTTGAGTCATAGTTTAACAAAGAAGATAATT11.0869565217391304No Hit
GTGCCCCACCTATTCATTTTATTTTTTCTTTTTGAAAAATAGACTATTGG11.0869565217391304No Hit
ATGGAATAAACTTTGAATGGAAACGAAGGGAATCATCAAATGGAATCGAA11.0869565217391304No Hit
ACCGTACGCCATACTTTCTTATAAGCCCTGTGTTTGTATTCTCATTTAAT11.0869565217391304No Hit
GCATGGACTCTGCTGACGCCGAGCGCTCGGCATACATTCCGGCTTCATGA11.0869565217391304No Hit
GGCAAAAATGTGCCTCAAAATTCAGGTGTTGCTGTCTTTCTCTGTCTCCC11.0869565217391304No Hit
CTCTACTACATCTAGGACGCCTCCGGTGAGCAGGGTCAGTGGAAGCCCCA11.0869565217391304No Hit
CTCCCGAAGTGCCGGGATTACAGGTGTGAGCCACCGTGCCCGGCCATTGC11.0869565217391304No Hit
ATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGA11.0869565217391304No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAACC11.0869565217391304No Hit
CGACTCCTTCCGTCTGCTGGGCGACGGCTGGCCGCCGACGCACCTGGCCC11.0869565217391304No Hit

[FAIL]Adapter Content

Adapter graph