FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003626560

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003626560
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences136
Sequences flagged as poor quality0
Sequence length100
%GC42

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT32.2058823529411766No Hit
GTTTGACTGGGGCGGTACACCTGTCAAACGGTAACGCAGGTGTCCTAAGG32.2058823529411766No Hit
GCACACCTCCTGCTTAGTGCTGCCTCATCATGGGCTCTGCTCTTCACACT21.4705882352941175No Hit
ACCCAATCTGGCTGGGTGTGGTGGCTCATACCTGCAATCCCAGCACTTTG21.4705882352941175No Hit
GTTCTAGATACATGCAGAGAATTTCTTATGGATGGGATATGAGGTGTAAG21.4705882352941175No Hit
ATATAGTGATAATGATATCTGCAGTCAGGAATCAGAAGATAATTTTGCCA21.4705882352941175No Hit
CCAACTGGGTGTCTAATAATTCAATTCAATTCTGGCATTAACGACCTGGA21.4705882352941175No Hit
CTTCCAGGTAGATCGCGCGGCGCTTGGCCGGGTCGCTCTCGCGCGCACCG21.4705882352941175No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG21.4705882352941175Clontech Universal Primer Mix Long (96% over 26bp)
CTATAGACTTTATAAATTGGTATTTTAATAATTTGCAAGAAAAAATTAGC21.4705882352941175No Hit
GTATAACTCTCAATCAAAAATAAGTGCAACTTTCATAAATTTCTTAAAAT21.4705882352941175No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT21.4705882352941175No Hit
GTACATGGGTTTCATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA21.4705882352941175No Hit
GTGATTATCCACCCAAAATGACTTTTGTATACAGATTATACTATCTACTG21.4705882352941175No Hit
CGTCGAATAAATAAAGGATACACAATGAGTAGCGTAGATATTCTGGTCCC21.4705882352941175No Hit
CAGAGTACTTTTCCCTTGTACAAAACCTTTTGTTCTCTCTGAAGTTAATA21.4705882352941175No Hit
CTCCAGCGCTGTGTAGCCGCGCTTCATCGCGCTCAGTACGCGATCGCTGC10.7352941176470588No Hit
CAATATTCTGAATCAAACTTAAAAATGACAGGCATTTTGTCAAAAAAAAA10.7352941176470588No Hit
GTTCCTGCACGCGGGCGCCCACCGCCACAGCCCAAGGTGCATGCACCGGA10.7352941176470588No Hit
GAGTACATGGGATGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG10.7352941176470588Clontech SMARTer II A Oligonucleotide (96% over 25bp)
CTCTGGTTCCGCGCAGACGAGCTCCTCTGCTGGGAGGACAGCGCTGGGCA10.7352941176470588No Hit
ACATTATCATGTGACTTGTACAAGAAAAAAGGTACCTGCAAAGGGTCAAG10.7352941176470588No Hit
GATTTAAAGTGGACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTAT10.7352941176470588No Hit
AGTACTAATCGCCGGTCGAGCGCGGCGCAAAATCGCTTTTAAACGCGCGG10.7352941176470588No Hit
CGGTTCGGCATGAACATCGCCGACGTGCAATCGGTCATCGCCTCGGCGGT10.7352941176470588No Hit
GGATTACATGGAAACCAGTTATCTCAAAATGCAATCATATCCACCTGTCT10.7352941176470588No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG10.7352941176470588Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GTAGCTCTATTTTTAGTTTTTGTAGGAATTTCCAAACTGTTCTCCATAGT10.7352941176470588No Hit
TTCTTACATGCAAATATATCAATGTTCCTTTACATTTATCTCACACATCT10.7352941176470588No Hit
CACTAATAGGGAACGTGAGCTGGGTTAGACCGTCGTGAGACAGGTTAGTT10.7352941176470588No Hit
GTCCGCACAATCATACTATGAAATAGATATCATTATTATCCTCCTCATTT10.7352941176470588No Hit
GTGGCAACAGAGGCGTCCGAATCAGACTGTTCCACTAGAGGGCGCTCGAA10.7352941176470588No Hit
CCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATC10.7352941176470588No Hit
GACTCTTAATTTCATGAAATGTTTCCATATAGCATGAGATGCCACTTGAC10.7352941176470588No Hit
CTGCACATGTATCCCAGAACTTAAAGTAAAATTAAAAAACTAAAAACAGA10.7352941176470588No Hit
AAATAATGAAGCAGGCCAGAAGATCTAGAAAATAGCCTGAAAAGGGCAAA10.7352941176470588No Hit
GTGACACATGTTGAGCACTGGCTGTCTTAAGCACAGTCCTGAACATGTCA10.7352941176470588No Hit
ATTCCATTCATACGAAGTGTTCAGAATAGCCAGATCCGTAGAGACCGAAA10.7352941176470588No Hit
TTCAAAGGCAGATTTGATCAGACAGAAGAAAGAAGCAGTAAACTTGAAGA10.7352941176470588No Hit
ACTGAGAGACTGAGGCAGGAAGATTGCTTGAAACCAGGAGATCAGCCTGG10.7352941176470588No Hit
CCCTAACTCATTTTATGAGGCCAACATCATCCTGATACCAAAGCCTGGCA10.7352941176470588No Hit
GTTTTGTGGCCTATCATGCAGTCTATCTCTGAGACTGTTCTTTGTGCTGA10.7352941176470588No Hit
CTTGGATCTTGGATGGTCTTTAACTTGCTTACTGATAGAAAGTAGCAGAA10.7352941176470588No Hit
GTTCTGTTCCATTGATCTATATCTCTGTTTTGGTACCAGTACCATGCTGT10.7352941176470588No Hit
GTCTCGCGGTGCAGTTCGATCTCTCGCACCAGCAGGTGGGTCTGCCGGTT10.7352941176470588No Hit
GTATCAACGCAGAGTACATGGGTTTCATCAAAAAAAAAAAAAAAAAAAAA10.7352941176470588No Hit
CGTTCATCCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTA10.7352941176470588No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA10.7352941176470588Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GTGTATAATAAACAGGTAAAATTTTGCCTATTTAAAGTAAAAAAGTTTAT10.7352941176470588No Hit
GATTCTGTAGCACGTAGAATAGAGACTGAGCTAGACTTGGAGTTCAGAGA10.7352941176470588No Hit
CACAGAGGGCATGGGAGCCTGGAGCCCAGCCCTCCTGTGCACCCTGTCTA10.7352941176470588No Hit
AACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCTATC10.7352941176470588No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT10.7352941176470588No Hit
GCTTGAACCCAGGAGGCGGAGGTTGCGGTGAGCCAAGATTGCGCCACTGT10.7352941176470588No Hit
GCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAG10.7352941176470588Clontech Universal Primer Mix Long (96% over 26bp)
ACTCCTGACCTCAAGTGATCTGCCCGCCTCGGCCTCCCAAAGTGCTGAGA10.7352941176470588No Hit
GTTAGGTACTGTTTGCATTAATAAATTAAAGCTCCATAGGGTCTTCTCGT10.7352941176470588No Hit
GAATAGATCATTCCACATTACTCAAGTTTTCCAGAGAGAGAGAAAGCAAG10.7352941176470588No Hit
GAAAAGAAGGTGAGGGCAGGGGTAGGGTGGTGGGACCCACTTGGCTCCTG10.7352941176470588No Hit
GTCCAATTCTGCCCTCTCTGTAGCAGGGGACAGGTTAGCATGACCACACC10.7352941176470588No Hit
TCGTTTTCCATTCGGTAAAAATCTGACACTGATCATGTTATGAAAAAAAA10.7352941176470588No Hit
GTACATGGGAAGCAGTGGTATCAACGCCAAGTACTTTTTTTTTTTTTTTT10.7352941176470588No Hit
GCCACACGGGGCCGAAGTTGTTGGAGTACTGCAGTGCATTGCAGATGAAC10.7352941176470588No Hit
GGTGTAAATTGTATTGAAAAAGATCGCGAATAAAAATCAACAAATGTGAA10.7352941176470588No Hit
TACATGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATC10.7352941176470588Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GTCTTACTCTCAGTCGCACAGGCTGGAGTGCATGCAGTGCCGTGATCTCG10.7352941176470588No Hit
GTGGAATGCTTGGATCAAAGTATGAGTGCTTAAAATCATGTAGATGTTGC10.7352941176470588No Hit
GACCAACGGAACAAGTTACCCTAGGGATAACAGCGCAATCCTATTCTAGA10.7352941176470588No Hit
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA10.7352941176470588No Hit
ATAGGAGGTTCCAACTAATTTTTTCCTATCTGATAAGTAACAGGCACATT10.7352941176470588No Hit
GTTTTGGGTAGAACCTTCTGTAAAGGTCTATTGGATCCGTTTGGTCCAAT10.7352941176470588No Hit
CCTAACCATTTGCTCATTGTGTTTTAAACACTGCACTGCTAGCTCAGAAC10.7352941176470588No Hit
GGTAGATTAAGTAGAGCTGCTCATATGATAGGCCTCACGGGTAAGGGATA10.7352941176470588No Hit
ACCCAAGGTTATCTAGGTTTTCTCCTATAAGAATTTTATTGTTTTGTGTT10.7352941176470588No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC10.7352941176470588Clontech Universal Primer Mix Long (96% over 26bp)
GACCTAAGCTGACCCAAGCCGACTGAAGGGAGGACGTATTCTATGCACCC10.7352941176470588No Hit
GCATGGAAGTTCATGACACATTTATCTGCATAAAAATGCTCTCCTTATTT10.7352941176470588No Hit
ATTTTAAAATACACCATTTAAAGTTAGCTCTGTCAGAAAGTAATTGCTGA10.7352941176470588No Hit
CGGTAGCTGTGCGCATACCGTCCATTCTCCGTCGACTGGAAGTGCGTCGA10.7352941176470588No Hit
GAAGACATAAAAAGATAGAACGTTGGAACTAAATTAAGCTTACAAAACAA10.7352941176470588No Hit
ATAGATTGGTGATAACGATTCAACCCCAGAGATCCAGCTAACTGTTGGCA10.7352941176470588No Hit
CTCGCTTCTGGCGCCAAGCGCCCGGCCGCGCGCCGGCCGGGCGCGACCCG10.7352941176470588No Hit
TTCCAAAGCTACTTCAGAGAAGCGCACTTCCGTGTGCGCCTGGGCCAGGC10.7352941176470588No Hit
CGTGACATCGCGGACCTTCGCCGCCACGGCCACCGCATCGGCACCCGGGC10.7352941176470588No Hit
TGGCAGAAGTGTAACAGTCTTTCGTTGTCTTAGATAATGCCCAGAGGAGC10.7352941176470588No Hit
GAATCTCAAGAAATAACTAAACAATTGTGGCCAAGAAGCAATGTGATGTT10.7352941176470588No Hit
GAATCAAATGGAATCATCTAATAGAATCGAATGTAATCATCATCGAATGA10.7352941176470588No Hit
GCCCTGGCAGGGCAATGGGCAGTAGATCAAGCTGGCCTGCCCTGCGTGGG10.7352941176470588No Hit
CATCTAATAGTTTGAACTGAGTTTGCTAAACTTACATAAACTCTAGTTGT10.7352941176470588No Hit
TCATGGCTCAGTTAAATCTGCTCAAGTACTAGAAAGAAAGGCCTTTCTAA10.7352941176470588No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCCTGTCTCTTAT10.7352941176470588Clontech Universal Primer Mix Long (96% over 26bp)
CTGTAATACATTTCTGTCAAGTTTCACAACCTAAGCTTGGTAAAATGGCA10.7352941176470588No Hit
GGTAGAGGTGAGCCTAAGTGTTATGTGAGAAGAGATGATGATTTGAAAGT10.7352941176470588No Hit
GTGTAAAAGTGTTCCTATTTCTCCACATCCTCTCCAGCATCTGTTGTTTC10.7352941176470588No Hit
CCCCCACCCATCCCTTCTATTGCTGCCTCCATAACAAACCTCTCACCACA10.7352941176470588No Hit
TTTTGGTAGTTACTTGAAATTTTCCTTGAAATCTTCATAAATGTTTTTAA10.7352941176470588No Hit
GCATCAACCCTCCCCCATGTGCAAATACCGGTTTTATTCATTAACTGACT10.7352941176470588No Hit
GAACACCACTGTGCTGTTCATGTGTATGTGAAACAGCCACATACACAAGT10.7352941176470588No Hit
ATCCTACAGAACTTTTCAGGGTAACTTGGTTCTTCCGGTCTGGTCATCAA10.7352941176470588No Hit
ACCTTGAAGCAGACAAAATGCCCATCTTATCAGCCTCGCTCACATCAGCT10.7352941176470588No Hit
GGAATAAATACATCAAAAAGAAGAGGCAAAGCTGTGAAACTAAGTTGCAT10.7352941176470588No Hit
ACACGGAGAAGCCCCCATCTCTACTAAAAATACAAAATTAGCCTGGCGTG10.7352941176470588No Hit
TCTGTGGTTTTTCTTCTAATTATCTTAACACTGTCTTTCACAGAGCAGGA10.7352941176470588No Hit
GATCTAGGATCAGTATCTGTTTGGGTCATTTCTAAGAGTTAATTAAACTT10.7352941176470588No Hit
ATAGTTGATTAAACAACAGCGACCTAAAGGGTGCTGAGAAGTCCACTGCT10.7352941176470588No Hit
GTGAAAGCGGGGCCTCACGATCCTTCTGACCTTTTGGGTTTTAAGCAGGA10.7352941176470588No Hit
CATCTCTACTAAAAACACAAAAATTAGGCAGGCGTGGTGGTGTGTGCCTG10.7352941176470588No Hit
CTTCCACTCACTGGATTTAGCTGTGGGCCCCAGGGGTTGCCCAGATTAGG10.7352941176470588No Hit
TTTCTGATGAGTGTGGATTGCTAATCCAGGAAGAAATAAATCTGGGAGTT10.7352941176470588No Hit
GATTCTGTAGCACGTAGAATAGAGACAGAGCTAGACTTGGAGTTCAGAGA10.7352941176470588No Hit
TCGCACAGCAGCGCACTCGGTGCCCCGCGCAGGGTCGCGATGCTGCCCGG10.7352941176470588No Hit
GGGTAATAAAAATTGGCAATGGACGTGAGTCTGAAGTGAATAAGCCCCGG10.7352941176470588No Hit
ACCAGGGACAGAATGGCTGCCTGCTGCTCTGGAGTCTGCTCCAGCAAGTA10.7352941176470588No Hit
CCTTAGCACTGCCTGAAATGTCATTCAAAATCAAGAACCAGTTTCCCTGG10.7352941176470588No Hit
GGAAAACAGAAAAGACATTAAATGAAAAACGATACATATAAGTAGCAGAA10.7352941176470588No Hit
GAATCTCAGCTTGCTGTGAGCAAATTAGAGCAATAGCCACATGCTACAGA10.7352941176470588No Hit
TGTCATTATAATTTGATTCATATTTCATCATTTTGTAATAGATCTTCTGG10.7352941176470588No Hit
NTTTTTTAGAGCACTTTCTTTCTGTCACTGCAAGATGGTCCAGGCTTATC10.7352941176470588No Hit

[OK]Adapter Content

Adapter graph