FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003626615

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003626615
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences132
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTCGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCACGTTCGTTATCG43.0303030303030303No Hit
ATGTCTAAGTACGCACGGCCGGTACAGTGAAACTGCGAATGGCTCATTAA32.272727272727273No Hit
CTTAGGGCCTGCGAGGCCTCTTGCCCCTGCCGAGCCCTGCATGCCTGGGG32.272727272727273No Hit
CTAAATAAATGTTGAAAGAAAAATAGTTTTTCATACAGGGGGAGGAAATG21.5151515151515151No Hit
AATCATCGAATGGTCTCGAATGGAATCATCTTCAAATGGAATGGAATGGA21.5151515151515151No Hit
GCTCACCGGAGGCGTCCTAGATGTAGTAGAGCGGCACCTCGCCACACAGG21.5151515151515151No Hit
CCTGAGGAAGGAGGATGCAGGGCGCTACCTGTGTGGAGCCCATTCGGATG21.5151515151515151No Hit
GCCTAAGTTGGTGGCCGATAAAATCAAGCGTACCAAGTTCACCACGCCGA21.5151515151515151No Hit
CTGAACTTCCTTTGGTAGTTGAAGATAAAGTTGAAGGCTACAAGAAGACC21.5151515151515151No Hit
GGGCGGTACACCTGTCAAACGGTAACGCAGGTGTCCTAAGGCGAGCTCAG21.5151515151515151No Hit
CTCATCATATTATTTTAAGGATTTGAGATAGTCTATTTAAAATACCTAAC21.5151515151515151No Hit
AAACGTACATGAGCATACACTGATTTTTACACAGAGACTGATACGTATTG21.5151515151515151No Hit
AAATTTCTGAGAATCCAATTTGCTTTTGTTTATATGGGTTATTTCTATTG21.5151515151515151No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT21.5151515151515151Clontech Universal Primer Mix Long (96% over 26bp)
GATGATTACATTCGATTCCATTTGATCATAATTCCATTCGATTCCACTCG21.5151515151515151No Hit
ATGATGTGGTCTTTGGAGTAGAAACCTGTGAGGAAAGGTATTCCTGCTAA10.7575757575757576No Hit
CAGTGGTATCAACGCAGAGTACTATTTTTTTTTTTTTTTTTTTTTTTTTT10.7575757575757576Clontech SMART CDS Primer II A (100% over 23bp)
AACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCT10.7575757575757576No Hit
AATGTGTCGAGAGCAAAGGCAGTCCGAGCCCTGAAGAACAACAGTAATGA10.7575757575757576No Hit
GGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGA10.7575757575757576No Hit
TCTCTACCCAGTGGGCAGTGAGGCCAGACAATGTCTCCAGCTTGAGGCTA10.7575757575757576No Hit
CTGCTTCACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACG10.7575757575757576No Hit
CTACAGAGGGAGCAGCTCAACGGGATCCTGCTGCACCTTGAGTCAGAGCT10.7575757575757576No Hit
CTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTT10.7575757575757576Clontech Universal Primer Mix Long (96% over 26bp)
CCCCCCGTGGCGGCGACGACCCATTCGAACGTCTGCCCTATCAACTTTCG10.7575757575757576No Hit
GAATTCACCAAGCGTTGGATTGTTCACCCACTAATAGGGAACGTGAGCTG10.7575757575757576No Hit
AAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTCCCCGGGTCGGGAGT10.7575757575757576No Hit
GCATTTATCAGATCAAAACCAACCCGGTCAGCCCCTCTCCGGCCCCGGCC10.7575757575757576No Hit
CCCATCACGAATGGGGTTCAACGGGTTACCCGCGCCTGCCGGCGTAGGGT10.7575757575757576No Hit
GATCACAAGGTCAGGAGATCGAGACCATCCTGGCTAACATGGTGAAACTC10.7575757575757576No Hit
TTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGAACCTCCGACTT10.7575757575757576No Hit
GAAGGGCAAAAGCTCGCTTGATCTTGATTTTCAGTACGAATACAGACCGT10.7575757575757576No Hit
CGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTACAATGCGTTTAAA10.7575757575757576No Hit
CCGCTCGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTAT10.7575757575757576No Hit
GTTATTGCTCAATCTCGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGT10.7575757575757576No Hit
GAATGGAATGGAATGGAATGGAATGGAATCAACCCGAGTGCAGAGGAATG10.7575757575757576No Hit
GCCCAAGACAGGAGGGAAAAGTCCAAGATCAGTTCCTCCACAAACATTAC10.7575757575757576No Hit
GTATCAACGCAGAGTACATGGCAAGCAGTGGTATCAACGCAGAGTACATG10.7575757575757576Clontech Universal Primer Mix Long (96% over 28bp)
TATCAACGCAGAGTACATGGGTACCAACCATTGTGTGCTGTGAGGTAAAG10.7575757575757576No Hit
CATTCAGGCTTCCCGTGTCTGATTGGCTACAGTGTGGGAATTTCCTCCCA10.7575757575757576No Hit
CGAAGGGGGTGGCCCAGTCGGAGGCGGCGGGGAACAGGCCCAGACACAGC10.7575757575757576No Hit
TTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTA10.7575757575757576No Hit
GCTTTAAGCAGGTAACTTTTTTTGTAATGGAAGAAATGCACTACAAAGTT10.7575757575757576No Hit
GTCTTGAGCTCCTGACCTCATGATCCATCCACCACTGCAAGTCCTTGGAT10.7575757575757576No Hit
ATCTAGTCCTAAGAACAATCCTGCAAGGTAGGTCTTCTTATCTCCATCAT10.7575757575757576No Hit
CCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCTCGGGGGTCGCG10.7575757575757576No Hit
ATCCTAGCTTCGGTGCTGGCAGTGTCCCAACAGGAATACCTAGACAGTAT10.7575757575757576No Hit
TGTGGCCACAGCCTCTCCTGCCCGGGATGACAAAGCCTCCTATGTTGCCT10.7575757575757576No Hit
GGGGACCGGCTATCCGAGGCCAACCGAGGCTCCGCGGCGCTGCCGTATCG10.7575757575757576No Hit
GTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACA10.7575757575757576No Hit
ACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCTATCA10.7575757575757576No Hit
ACTTAAAGGAATTGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTT10.7575757575757576No Hit
ATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTA10.7575757575757576Clontech Universal Primer Mix Long (96% over 26bp)
GGGGGCGGGCGCCGGCGGCTTTGGTGACTCTAGATAACCTCGGGCCGATC10.7575757575757576No Hit
CCTCAAGATCACAGATTCTGCTGGCCATATTCTCTACTCCAAAGAGGATG10.7575757575757576No Hit
ATTCTGTATCATAAGTCTGGAAAAAACCTAATCTTTTTTTCTTTGAAGGT10.7575757575757576No Hit
AGCCACCACACCCAACCTGTATCTATCATTTTTAATCCTGGCAACAACCC10.7575757575757576No Hit
CCTGCGGTGTGGGCAGAAGCAGCTTCTTGCCCGTCTGCAAAAGCTGCAAA10.7575757575757576No Hit
TTACCAGATTCAATTGTTGATTTGCTTGTCCTGCGTTCAACAATAGATAC10.7575757575757576No Hit
GTTCAGGACGGGTCAAAGGCAAAGGCCTTTGTGATGTGAGCAAAGGCAAC10.7575757575757576No Hit
ATGTAAGATGGCTCGGGAAGCTGGAGCCACAAGAGTGCACGCCTATACCT10.7575757575757576No Hit
ACTGCAGCAGATGGGGCGGCGGCGGCTTCTACGCCATGGACTACTGTCTC10.7575757575757576No Hit
CCTTCTGACCTTTTGGGTTTTAAGCAGGAGGTGTCAGAAAAGTTACCACA10.7575757575757576No Hit
ACTCCCCCCGGAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCGGCGGG10.7575757575757576No Hit
GAACTGGAGCATGATGTCGGTGGGGAGGGCGAGGAGGGCGCGAAGGACTG10.7575757575757576No Hit
CACCCTATCATCACAATTAAAAGAACTAGAGAAGCAAGAGCAAAAAAATT10.7575757575757576No Hit
GTACATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATC10.7575757575757576Clontech Universal Primer Mix Long (96% over 25bp)
ACCCTACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCAGTACGAGCT10.7575757575757576No Hit
ATACAGAGTATCCTTAGCCTCCCCCCCCCCAATAAAAACCGTGGTTATTG10.7575757575757576No Hit
CCACACAGCCCTCCTTATGGATCGCCTTCTCGTTGAAATTAATCCCACAG10.7575757575757576No Hit
ACGTCGCCCTCACCCGCGCCCGATCTGCTGTACGACTATGGTGGTCCCCT10.7575757575757576No Hit
CAATTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACC10.7575757575757576No Hit
TGACAATGCTGAGGATGGCTTTAACGGTTCGGAGATCCCGGTGCCGTCAG10.7575757575757576No Hit
CTACAGATGGAGCAGCTCAACGGGATCCTGCTGCACCTTGAGTCAGAGCT10.7575757575757576No Hit
GTCCTGCACCCTGCACAGGTGGCCCCAAGCCGCTGTCACCTGCGTCTAGC10.7575757575757576No Hit
GCTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTG10.7575757575757576Clontech Universal Primer Mix Long (95% over 23bp)
GGAAAAGCCAAAATAGAAAGGCAAGGAACACATATAACTGTGGTTTCCCA10.7575757575757576No Hit
GGTCTGGCCACCTCATGAATCCAACAAGCATTAGTGTGGCATTTCAGTGG10.7575757575757576No Hit
CAGTTATCCAAGTAGGAGAGGAGCGAGCGACCAAAGGAACCATAACTGAT10.7575757575757576No Hit
GGCTAAATTCGTGATCCGCCCAGCCACTGCCGCCGACTGCAGTGACATAC10.7575757575757576No Hit
TATTATCACCATTTAACAAGTGTTTCTTGATACGCGGGAGCTTCCTCAGG10.7575757575757576No Hit
GGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTT10.7575757575757576No Hit
CCCGTGTTGGGTCAAATTAAGCCGCAGGCTCCACTCCTGGTGGTGCCCTT10.7575757575757576No Hit
GAACCCTCTAAATCCCCTTGTAAATTTAACTGGACTAACAGTTAAATTTA10.7575757575757576No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG10.7575757575757576Clontech Universal Primer Mix Long (96% over 26bp)
GTATTTCTTAATTTACTGTAATGTCATCTTTGTAATTATGAATTAACAAT10.7575757575757576No Hit
CCATCACGAATGGGGTTCAACGGGTTACCCGCGCCTGCCGGCGTAGGGTA10.7575757575757576No Hit
CATCTAAGGGCATCACAGACCTGTTATTGCTCAATCTCGGGTGGCTGAAC10.7575757575757576No Hit
GGGCAACCTGCACAGCCAGTTCGAACAGCTGCCGCACCTGGCCAACATGA10.7575757575757576No Hit
GAAAGTTTTCATTAATCAAGAACGAAAGACGGAGGTTCGAAGACGATAAG10.7575757575757576No Hit
GCCAGTAGGCGGGGACCGTGACTGGCACGAAGGTGAGGGGTGGGATGTAG10.7575757575757576No Hit
CACATACACACCATACTCAGCCACAGCACAGCTCTTATCAAAGCTTAAGA10.7575757575757576No Hit
CTTCAGATGGTCAGTAAATTTAAAATTGGCATTTCGCCCCCAGCCAGAAA10.7575757575757576No Hit
GCACTACTGCGCAACGAGCTCGGCGATAGGGGCGTACAATCAGCACAGCA10.7575757575757576No Hit
GCTTTTAACTGATTCTTTATTTGACTGAAGTTCCTTTTTCAACTTGAGAT10.7575757575757576No Hit
ACACTCAGCTAAGAGCATCGAGGGGGCGCCGAGAGGCAAGGGGCGGGGAC10.7575757575757576No Hit
TTTTTGCGTTGATACCACTGCTTCCCATGTACCTGTCTCTTATACACATC10.7575757575757576Clontech Universal Primer Mix Long (95% over 21bp)
CTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGACTTGCCCTCCAA10.7575757575757576No Hit
GAGTAGTTCATGGCGAGTTCGTTGTAGCGGTCGAGGATCGCCTTCTTGGC10.7575757575757576No Hit
TCGTCGCCGATTTCTACCCGTGTCCCCATGATCTACTCCTCAGTAAGCAT10.7575757575757576No Hit
CGGACATGCAGAGGTGGCACTCAGAGTCTCGCGGCAGCCATTCTCCTGTC10.7575757575757576No Hit
TACCATGCCTGGAAGGCCAATGCCATAGGCCGGGGTGCCAAGTCAGTGCG10.7575757575757576No Hit
GTTCAGGATAATCACCTGAGCAGTGAAGCCAGCTGCTTCCATTGGTGGGT10.7575757575757576No Hit
CCCTATTAGTGGGTGAACAATCCAACGCTTGTTGAATTCTGCTTCACAAT10.7575757575757576No Hit
TAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCC10.7575757575757576No Hit
ACATGGTGAAACCCCATTTCTACTAAAAATACAAAAAAATTAGACAAGTG10.7575757575757576No Hit
CCCAAAGACTTTGGTTTCCCGGAAGCTGCCCGGCGGGTCATGGGAATAAC10.7575757575757576No Hit
ATTTACAGCAGAAAAGCCAGAAATTTACTTCCTGTTCACCTTTGCATTTT10.7575757575757576No Hit
ATTCTTATCTCCAGCCTGGGAAAAGTTCTCCTTATTTGTTTAGATCCTTT10.7575757575757576No Hit
ACCTCATGGCATGTTTGAGGATGAAATGAGCTAATAAACACAGTCTTCAG10.7575757575757576No Hit
TAATCCCACAGATGGTAGCTTCGCCCCATTGGCTCCTCAGCCAAGCACAT10.7575757575757576No Hit
AACATCCGTTTTTGCGGTGTTTTGATTGTTGAAGGAAGTTGCCGATCCGC10.7575757575757576No Hit
GTACATGGGTGAAGAAAGTATAGAAGACGTGGATGATGAAGAATTTGAAG10.7575757575757576No Hit

[OK]Adapter Content

Adapter graph