FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003626645

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003626645
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences49
Sequences flagged as poor quality0
Sequence length100
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTCGCGCTCGGCATCCGCCACATGCAGGACGCGGAGACCGGCAGCTTCG48.16326530612245No Hit
GTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGATTAATGAAAAC36.122448979591836No Hit
ACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTCAGCTTTGCAAC24.081632653061225No Hit
GTCCTAACCCCACCTTTTACGTCGGGGGATCGGTGGTGCCGATGCGCGAG24.081632653061225No Hit
TCCTTGAAGAATGTGGCTGTAGATGAACTGAGCAGGCAGGGCTGCACCGT12.0408163265306123No Hit
CCCTCTAAGAAGTTGGGGGACGCCGACCGCTCGGGGGTCGCGTAACTAGT12.0408163265306123No Hit
GTTATGCTGTGATATTAATTTTCCTCAATAATGTTTTTCTTGACTGTTCA12.0408163265306123No Hit
GTACCTGCACCGGTCCGACCATGTGTCCGAACCCGGCGAACACGCCACCG12.0408163265306123No Hit
CTTTCAGCCTTTTGGGTCCTGTATCCCAATTCTCAGAGGTCCCGCCGTAC12.0408163265306123No Hit
GTATCCTGAGACTTTGCTGAAGTTGCTTATCAGCTTAAGGAGATTTTGGG12.0408163265306123No Hit
GTACGAGAGGAACCGCAGGTTCAGACATTTGGTGTATGTGCTTGGCTGAG12.0408163265306123No Hit
CCGCATGTTTGATTGCCTCGGAGTTACCTAATTCCATCGCCATCTCAAAC12.0408163265306123No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGACACT12.0408163265306123No Hit
CACCCGTGGTCACCAAGGTAGGCACGGCGACTACCATGGTGACCACCGGT12.0408163265306123No Hit
GAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCAC12.0408163265306123No Hit
CACCAAATGTCTGAACCTGCGGTTCCTCTCGTACTGAGCAGGATTACCAT12.0408163265306123No Hit
ACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCTATCA12.0408163265306123No Hit
CGAGGATCCATTGGAGGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCA12.0408163265306123No Hit
GTGAGGAGCCTGAGGAAGAGCAGGAGGAAACGGGGTCGGGCCCAGCTGGC12.0408163265306123No Hit
CAATACAGGACTCTTTCGAGGCCCTGTAATTGGAATGAGTCCACTTTAAT12.0408163265306123No Hit
TGACCGATGTCTGTGGATACAGCAGATTTGGAAGTGATAGCGGAGCAGCT12.0408163265306123No Hit
CCTTAAAAATGATTAATAGGGCCGGGTTCAGTGGCTCACGCCTGTAATCC12.0408163265306123No Hit
ATACAGACCGTGAAAGCGGGGCCTCACGATCCTTCTGACCTTTTGGGTTG12.0408163265306123No Hit
AGCCATGCATGTGTAAGTACGCACGGCCGGTACAGTGAAACTGCGAATGG12.0408163265306123No Hit
CTCTATGCCTTCGCCGTGGACTCACCGAGGAAGTCCACCTGCACGGGCAG12.0408163265306123No Hit
GGGGAATTCACACCGGCGCACGCCACAGGCGTCATACTTCCCAAGAAGCG12.0408163265306123No Hit
CCTCAGAGCCACAGCCCCACAACCGCACGAGGCTGGTACAGTTCTGGTTT12.0408163265306123No Hit
CCTCATAAATAGAGACTTGAGTGATGCTATTCTGGTGCAGCGTCTCCAAG12.0408163265306123No Hit
CAGCCATGCGTCCCGCGCACATTCTCGGTGATACGGACGGCACGATCCTC12.0408163265306123No Hit
TGGTAGCTTCGCCCCATTGGCTCCTCAGCCAAGCACATACACCAAATGTC12.0408163265306123No Hit
ATACAGACCGTGAAAGCGGGGCCTCACGATCCTTCTGACCTTTTGGGTTT12.0408163265306123No Hit
GCCAAATTGGGACTCAGCAGAGCCTGTTGATGTCAAACCCATCAGAAATG12.0408163265306123No Hit
ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCG12.0408163265306123No Hit
CTAAGAAGTTGGGGGACGCCGACCGCTCGGGGGTCGCGTAACTAGTTAGC12.0408163265306123No Hit
GTGGATAACGGTGCCGACGTGCAGCGTTGGAAGAAGCTCTCATGCGTGGG12.0408163265306123No Hit
GAATTTATGTTTTCCAAAGATCATCTGCTGTGGGAGAATAGACTGTATTG12.0408163265306123No Hit
CATAAAGAGATGTTCTGGCTGGGTGTGGTGGCTCATGCCTGTAATCCCAT12.0408163265306123No Hit
GTTCAGCGTCCAGCAATGGGAAACGCTGGCGGGTTACCTGCAGCCGATCG12.0408163265306123No Hit
CCCCGTAGTTGTGTCTGCAGTAGGTGTCCACCGCGGCCCGCCTCTGCTCC12.0408163265306123No Hit
GCAGTGTAAGACTGACTCTTACTGCATCAGAAAATGACAGTGGAAGAGTA12.0408163265306123No Hit
GGGTCAGCGCCCGTCGGCATGTATTAGCTCTAGAATTACCACAGTTATCC12.0408163265306123No Hit
TACTAGAAGTGTGAAAACGTAGGCTTGGATTAAGGCGACAGCGATTTCTA12.0408163265306123No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)