FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003626810

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003626810
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences91
Sequences flagged as poor quality0
Sequence length100
%GC48

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCAGACAGAGGAGAATCTTTCTTGAGATATGGGATGAGAAAGTTCAAGTG33.296703296703297No Hit
GGAGTGCCCCATGCCCAGTTCTTAGAGACCCTTGATAGCTCCTAGAAGAC22.197802197802198No Hit
ATTTGATTCAGAGAAACAGAGCATGAGTTTTCTTAAAAGTAACAAGAAAA22.197802197802198No Hit
GTCTGAACCTGCGGTTCCTCTCGTACTGAGCAGGATTACCATGGCAACAA22.197802197802198No Hit
CGTTAAAGGATTTAAAGTGGACTCATTCCAATTACAGGGCCTCGAAAGAG22.197802197802198No Hit
ATCGAAAGCAATGGTGTCCCTGTCAGGTATTTATAGTTCTCTCAAACCAG22.197802197802198No Hit
TATCAATATTTATATAGGACTTTTGTATGTGATAAAGATGGCATTGGAAG22.197802197802198No Hit
CTTCAAGGCGGTGGACGGCCTGAGCCTCTCGGTCGAGCGCAACGAGCTGC22.197802197802198No Hit
AGGCCTGACAGTGGTATACAAAAGCAGTATAGATCTCTATTTCTATGTGA22.197802197802198No Hit
CTTCAATAAACCACAAGCATCTCAAAAAAAAAAAAAAAAAAAAAAAAAAA11.098901098901099No Hit
CTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATC11.098901098901099No Hit
GTTTTTCAATTAGTCCACAGGTATTTATTGAGAACATACTACAGTCTAAC11.098901098901099No Hit
TTCAAAAGCAATAGAATAATCTTCCATTTGGCTGTCGTGAGGAGTAATTG11.098901098901099No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTGGGTACCAAATTTCTTT11.098901098901099No Hit
GGTCCAAATATCTGCTTGCAGAGTTTACAGACAGAGTGTTTCCAAACTAC11.098901098901099No Hit
GTTAAGGGAAAGCGCCGAGATGACGGGCTTTCTGCTGCCGCCCGCAAGCA11.098901098901099No Hit
TCCCGACGCTTTGACCCCTGGCAAAGATCTCTGCACATCGCCCGGGGAAG11.098901098901099No Hit
CAGTCAATTCATTCGATGACGATTCCATTCAATTCCGTTCAATGATTCCA11.098901098901099No Hit
CAACAACACATCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTA11.098901098901099No Hit
ATCTACGAACTATCACTATGAACATTTCTGTTAAATTGAAGCTATGAGAC11.098901098901099No Hit
GCGAATGACAGTGGAAAGCTGTGTGTTGATTTCATGAATGCGATTTCTGA11.098901098901099No Hit
TTGTGATTCCATGGTTGAAAACAAGCTCTAAACCCAATGGGAATCTTTAC11.098901098901099No Hit
AAGTAGGAGAGGAGCGAGCGACCAAAGGAACCATAACTGATTTAATGAGC11.098901098901099No Hit
GGAAGCGGCCATCGCCGACATCAACGCCACCGGCGGCGTGCTCGGCAAGA11.098901098901099No Hit
TCTTCATTGTTATCTGCAGTGGGCCCCCAGATGACTGGATCTTGTGTTCA11.098901098901099No Hit
GCTTCCGCCTGGCCTGGCCACCCCTGCTGACCGCAGACTCGGGCTACTAT11.098901098901099No Hit
GAATTTCACCTCTAGCGGCGCAATACGAATGCCCCCGGCCGTCCCTCTTA11.098901098901099No Hit
GGTTTATTTGAAGGGCAAGGGCTGAGATTAGTGATGAGAGGGTGGTGTTT11.098901098901099No Hit
GTGGAGCGATTTGTCTGGTTAATTCCGATAACGAACGAGACTCTGGCATG11.098901098901099No Hit
GGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACG11.098901098901099Clontech Universal Primer Mix Long (96% over 26bp)
CGTGTGATTATTTGGAACAGTTAGACTTGCCACGTTGGGTCAGTTTTAGA11.098901098901099No Hit
GTTATATAATGACACATTAAGGCGTAAATTCTTTTGGCTTATAATTCTTA11.098901098901099No Hit
GATGGCCCCTAAGATAGAGGAGACACCTGCTAGGTGTAAGGAGAAGATGG11.098901098901099No Hit
GTATTTCACCGGCGGCCCGCAGGGCCGGCGGACCCCGCCCCGGGCCCCTC11.098901098901099No Hit
GAAGGGCAAAAGCTCGCTTGATCTTGATTTTCAGTACGAATACAGACCGT11.098901098901099No Hit
TGACTAACTTACGGCGGGCACTGGGAATGGAAATTTGTTCAACCTGCACT11.098901098901099No Hit
CCCAGACACTCTCGCCCTGCCTCCCCGGATCCGACCCCAGAAAAAGAGGA11.098901098901099No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT11.098901098901099Clontech Universal Primer Mix Long (96% over 26bp)
ACTGGACTCTACGTGGATCAGTATTTGTATCACTACTGTGTTGTGGATCC11.098901098901099No Hit
CTTCAAAAATGAAGTCCCAACTGGGAGCAGTGGCTCATGCCTGTAATCCC11.098901098901099No Hit
CGGTAACGCAGGTGTCCTAAGGCGAGCTCAGGGAGGACAGAAACCTCCCG11.098901098901099No Hit
CCTCCGGGCGGACTGCGCGGACCCCACCCGTTTACCTCTTAACGGTTTCA11.098901098901099No Hit
CTTTTGAAAAGATAGTAGAGGCACAAAGAAGCCATATACTATCCTCCAAG11.098901098901099No Hit
ACCCACTCCCGACCCGGGGAGGTAGTGACGAAAAATAACAATACAGGACT11.098901098901099No Hit
GAGACAAAGTCTCACTCTGTTGCCCAGCCTACAGTGCAGTGGTGTGATCA11.098901098901099No Hit
GGAAGGGGATGGACGGTCCTCCCCGCGGCGGGGTTTTCAGCCCTCGCGGG11.098901098901099No Hit
GAACAGCTCTTTGGACACTAGGAAAAAACCTTGTAGAGAGAGTAAAAAAT11.098901098901099No Hit
CATTTATCAGATCAAAACCAACCCGGTCAGCCCCTCTCCGGCCCCGGCCG11.098901098901099No Hit
GATCAGGCAGAATCCTGCTATTCCCAAGAACCCTCGTAATGGCAAAACTC11.098901098901099No Hit
GTACATGGGGAAGGCGGCGGCGATGGCGGCGGGGATAGTGGCTTCTCGCA11.098901098901099No Hit
TCACCACACCCAGCTAATTTTTGTATTTTTAGTAGAGACGGGGTTTCACC11.098901098901099No Hit
ATGGAGACATACAGAAATAGTCAAACCACATCTACAAAATGCCAGTATCA11.098901098901099No Hit
TCCCCGCCCCTTGCCTCTCGGCGCCCCCTCGATGCTCTTAGCTGAGTGTC11.098901098901099No Hit
GACCCAAACTGGGATTAGATACCCCACTATGCTTAGCCCTAAACCTCAAC11.098901098901099No Hit
TCTAGGTGGAGGTTGTGCATGTTGTCCTTTTTATCTGATCTGTGATTAAA11.098901098901099No Hit
CCATGAAGCTCGCCGCCCTCCTGGGGCTCTGCGTGGCCCTGTCCTGCAGC11.098901098901099No Hit
GAGTGAGGTAGGCCTGGGCCCGCTGACTTCAGGGTGAGGCCACAGCTACT11.098901098901099No Hit
ACATTGGACAAAGTCTGGTCTCCAAGCAGGTGCCAGGCATGGACAGCTGC11.098901098901099No Hit
CGCTATGAACGCTTGGCCGCCACAAGCCAGTTATCCCTGTGGTAACTTTT11.098901098901099No Hit
CTCTCGTACTGAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGT11.098901098901099No Hit
CTTTTGAATTCATCTTCTGCTATATACTCCAAATATGCAAATGGAATTGA11.098901098901099No Hit
TAATTACACAGTGAGCTTTGGGCTATTTTTTCCATGAGCTTAATGATGCT11.098901098901099No Hit
GGTTAGAACAGTGAATACTAGTGGAATTGTTTGGGCTGCTTTTATTTTCT11.098901098901099No Hit
TCCCTCACCTGGTGACTCATGATGCTCGAACCATCCGCTACCCAGATCCT11.098901098901099No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGT11.098901098901099No Hit
GTACCGGATGTCACAGGCGGTGACAAGGTCCACACCTCCGCCAATGCAGC11.098901098901099No Hit
GCGTGGCCCTGTCCTGCAGCTCCGCTGCTGCTTTCTTAGTGTGCTCGGCC11.098901098901099No Hit
TTCCCACACTCCTTGCACTGATAAGGCTTCTCTCCCGTGTGTATCCGTTG11.098901098901099No Hit
GGCGGGGGACCGGCTATCCGAGGCCAACCGAGGCTCCGCGGCGCTGCCGT11.098901098901099No Hit
CGTATCGGGTCGCCGAGAGGAGTGCGACGCGGTCGCCTGCCTGCACGCCA11.098901098901099No Hit
GGACGATCTTCGCCCCATGCTCCTTCCGATGATCATCGGCGTGGCCATCG11.098901098901099No Hit
TTATTACCCTCACTGTCAACCCAACACAGGCATGCTCATAAGGAAAGGTT11.098901098901099No Hit
GTTGGATGGCAAGCATGTGGTGTTTGGCAAAGTGAAAGAAGGCATGAATA11.098901098901099No Hit
CTTGTGCAGGAAGGAGCCTGGTTCCCGAGGGGTAGAGAAGATGTTTGTCT11.098901098901099No Hit
ATTCAATTCCGTGCAATGATTCCATTTGATTCCATTTGATGTTGATTCCA11.098901098901099No Hit
CACCCTCCCCCAAAAGCCCAGAGAAAGCATCATTAAGCTCATGGAAAAAA11.098901098901099No Hit
AGTGCAATCTTGGCTCAGTGCAATCTTGGCTCACTGCAACCTCCGCCTCC11.098901098901099No Hit
GTGGTATTTCACCGGCGGCCCCTCGCGGGTGAAATACCACTACTCTGATC11.098901098901099No Hit
GCTCCCAATGAAAGCCTTTCCACAGGGCAAATATAAAAGAGAGAGTAGAG11.098901098901099No Hit
CCCTCACTTTGCATGAGGAGCTGAAACTGACCAGTGTCCAGTGTTAGCCC11.098901098901099No Hit
GGACTACACCGAGTCACACAAGCCTGCCCATGTGCACGTCGCTCTGCGGA11.098901098901099No Hit

[OK]Adapter Content

Adapter graph