FastQCFastQC Report
Tue 10 May 2022
EGAF00003626955

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003626955
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences369191
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTTATACACATCTCCGAGCCCACGAGACTATTACAAGCGTATCTCGTATG10080.2730294075424374No Hit
CTTATACACATCTCCGAGCCCACGAGACTATTACAAGCGTATCGCGTATG8160.22102380610578265No Hit
GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGATAT6330.1714559672364711No Hit
GCCTAGTACTGTGCGCCAATTAGGTCGTCATTGCGCCAGCTCGTCAGCGC6280.1701016546990582No Hit
ATACACATCTCCGAGCCCACGAGACTATTACAAGCGTATCTCGTATGCCG5970.16170491696709835No Hit
GTATACGGGCGTCGGCATCCAGACCGTCGGCTGATCGTGGTTTTACTAGG4420.11972122830729894No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT4120.11159535308282163No Hit
ATACACATCTCCGAGCCCACGAGACTATTACAAGCGTATCGCGTATGCCG4060.10997017803792616No Hit
GTGTAGGACTCGTCGCATTGGATGACGATGCCTAGTACTGTGCGCCAATT3710.10048999027603599No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)