FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003627147

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003627147
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences132
Sequences flagged as poor quality0
Sequence length100
%GC57

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGCGGTGGTTGGCGTGCTGCAGCGCGTGCAGATCGACGAAGAGGATGCC32.272727272727273No Hit
GGGCAAACCGCGTCCCGCGCCCGCCGCGGGACGCGGTTTCCCTTTACGCA21.5151515151515151No Hit
CGATATGCTTGTCGTTGATCGGCACGCCTTGCAGCCGGTAGACCTCCTGG21.5151515151515151No Hit
GAGTAATATGATGACGCTGAAGCTGAAGAACTCTCTTTACAACATACACG21.5151515151515151No Hit
CAAATACTGAAAATTATTTGAGTGCAAAAGATCAGGACAACAATAAACTT21.5151515151515151No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA21.5151515151515151Clontech SMARTer II A Oligonucleotide (100% over 25bp)
CCTCGCGGATGCGGTCGCCGCGCGTGATCCGGTCGATCACGTCCATGCCT21.5151515151515151No Hit
CCCTCGGCCATGTAGGAGTTCAGCGCGTAGTGCAGGTTCACCACGCGCCC21.5151515151515151No Hit
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA21.5151515151515151No Hit
GTGCTCACCTCCAACTCCGCTTCCAACCTCGCCGTGCCCGTTAACTTCGC21.5151515151515151No Hit
GTATATAAACTATTTATTAACAGACAAGGCCTACAGACTTATTTCTTCTT21.5151515151515151No Hit
CAACATCACTGATCGTCAAAGAAATGCAAATCAAAACTACAATGAGATAC21.5151515151515151No Hit
TCTGATGTCAGTAGAGGACAAGGCTCTTCGCTGACATCTGACCTCCGACC21.5151515151515151No Hit
CGGGAGGGCGCGTGCCCCGCCGCGCGCCGGGACCGGGGTCCGGTGCGGAG21.5151515151515151No Hit
CGGCATCACCGTGAACACCGGTCTCGGTGGCACGTACGAGCACGTCGACC21.5151515151515151No Hit
CATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAAG10.7575757575757576No Hit
CACTAGAAAAGTCCACAACTTCCAGGCCAAGCCCGCAGTGCCTACGTCTA10.7575757575757576No Hit
GGACTGGACGGTGCTCCTCGCCGAGGCGCGCGCCGCCGGCGTGCTCGGCG10.7575757575757576No Hit
AGAATGTTCCCTGTTATATACCAGGTTTGAGACACTCTTTCTGCACTACC10.7575757575757576No Hit
TCAACGCAGAGTACATGGGAAGCAGGGGTATCAAAGAACAGTACATGGGA10.7575757575757576No Hit
GAGATGGTATCTCATTGTGGTTTTAATTTGCATTTCTCTGATGACCAGTG10.7575757575757576No Hit
GTACTGCATCCGCCGCTTAGCCCGACCTGTCTTGTTCTTCTTCTTCTCCT10.7575757575757576No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG10.7575757575757576Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTCAGCCACCCGA10.7575757575757576No Hit
CATTGACGGCGACCGAGGGCGCGCCGCGGTCCTCCGCGAGCGCGCTGACG10.7575757575757576No Hit
GTGAACACGCTGATCGTGGGCCGGGCCATCACCGGCCGCGGCGCGATCGT10.7575757575757576No Hit
TGATTACATTGGATTCCATTCGTTGATGATTTCATTCGGTTCCATTCAAT10.7575757575757576No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA10.7575757575757576No Hit
GGATAGCATTCTTACGTGTTACATATAGTGGACTTGTCATCCTGGCAGTA10.7575757575757576No Hit
TCCTGAAAAATCACCGCCACTTCGCGGCGGCTCCGGGGCTCAAGCCGGAA10.7575757575757576No Hit
GGGTTGAGGGATAGGAGGAGAATGGGGGATAGGTGTATGAACATGAGGGT10.7575757575757576No Hit
CGGTCATGCAGACGCGCACCTCGCAGCCGGCGCGCTGGAGTTCGCGCAGC10.7575757575757576No Hit
GCCACGGGGACTGTTATTCGCAAGCTGGTTTTCTAGACCTGTTAGCTGGA10.7575757575757576No Hit
ACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGCCAGTCAGTGTAG10.7575757575757576No Hit
GTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTGTCTC10.7575757575757576Clontech SMART CDS Primer II A (96% over 25bp)
TGGTACCTCTGGTGGCGGGCGGCATCTGCCAGTGCCTGGCTGAGCGCTAC10.7575757575757576No Hit
CTTTTTTTTTCGTCGGCAGCGTCAAAAAAAAAAAAAAAAAAAAAAAAAAA10.7575757575757576No Hit
GCGGAATCCGCAACATGTCCAAGACGCCCTCGGCGATCTGGGTCGTGGAC10.7575757575757576No Hit
ACTCGGTCAGAGCAGGATCCGCAGGCGCCTGCACCTGTCTCCCGGGCAGC10.7575757575757576No Hit
GACTCGGCGACGTTCTCGGCCACCTGGCGCCACACGTTGCACCGGAGGAA10.7575757575757576No Hit
CCCCGCACGCCGGCGGCGTAGCGACTCCGGGCTTCGAGGGTGGTGCCGGA10.7575757575757576No Hit
CTGCTACATCATGAAGATAGCTCCAGAGAGCATCCCCAGTCTTGAGGCTC10.7575757575757576No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT10.7575757575757576No Hit
AATACAGACCGTGAAAGCGGGGCCTCACGATCCTTCTGACCTTTTGGGTT10.7575757575757576No Hit
GCCCTGATGAATGCAAGGCCCAAAGAGGCAACAGTCCCACACAGGAGTCA10.7575757575757576No Hit
CCCTACCCCTATATCTTCCTCAACCTCATGCTCTACACGCTGGCGGCCGT10.7575757575757576No Hit
GATCCAGATGCTCCAGGTTAGGACAAAGCTCTAAAATCTGCCTAACCATT10.7575757575757576No Hit
GTTTGACACCGATGGTAACGCTTACGCGATCACGGGTCTTGGCAGCAATC10.7575757575757576No Hit
CTCCCGACCCGGGGAGGTAGTGACGAAAAATAACAATACAGGACTCTTTC10.7575757575757576No Hit
GCATAAGGCAAAATTCATCATGATGGTCATGGTGATTAGAGAGCTCCCCC10.7575757575757576No Hit
CGCCGTTCGGTGCCTTCGTCTCCCTGCTCCCGGGCAAGGACGGCCTGGTG10.7575757575757576No Hit
TAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTC10.7575757575757576No Hit
GTTAAAGGTACTGCGGCAAAGATACCTAATTTATTCAAATGGTGTTGCCA10.7575757575757576No Hit
GAATGAGTCCACTTTAAATCCTTTAACGAGGATCCATTGGAGGGCAAGTC10.7575757575757576No Hit
GAGCCATCAGGCTCATGGAGGCGAATGATTCGATATCGGTATCAATACCG10.7575757575757576No Hit
CTCCAATGGATCCTCGTTAAAGGATTTAAAGTGGACTCATTCCAATTACA10.7575757575757576No Hit
CTCCGGTTGAGGTTCTGATACGCCGCGCTCGTCTCGCCCGCGACGAGCGC10.7575757575757576No Hit
GCCCATTTCGCCCGCCGCATGACGGAGGTGACCCGGCTCTACCACCCGGA10.7575757575757576No Hit
TTCCATTGGAGTCCGTTCGAAGATTCTCTTCGATTCCATTCGATAATTCC10.7575757575757576No Hit
CCTGATGGTGTCGCGATCGGAGACCGCCCGCCAACTCCTCACGCCGGGCG10.7575757575757576No Hit
AAGATAAATTTAAACCTGAAAAGTAGGAAGCAGAAGAAAAAAGACAAGCT10.7575757575757576No Hit
ACGGCAGCGCAGGCCACCTGGCATTCGAATACCTGAAGATGACGGCCGAC10.7575757575757576No Hit
GCCATGAGGTCCAGCCGGTAGGACGGGCGCACGCACCTGTCTCTTATACA10.7575757575757576No Hit
GATCAAAACCAACCCGGTCAGCCCCTCTCCGGCCCCGGCCGGGGGGCGGG10.7575757575757576No Hit
ACGAGAAGCGAGTCAAGCGCTCATCTACCGGCTCGCGCGGATACATCGAC10.7575757575757576No Hit
AGTTAAAATATTTAAAATCGTAGCTTCAGGGCGTCCTTCAAATGATTGAA10.7575757575757576No Hit
GCGTCCACTGTGGAAAGTTGGGGGCGTTGGCGAGCGTCAGGCCGGTCTCG10.7575757575757576No Hit
TCCTTTAAGTTTCAGCTTTGCAACCATACTCCCCCCGGAACCCAAAGACT10.7575757575757576No Hit
CATAAGAAACACCTTATCATTCAATGAAGAACAACCAACAGCCACAAAAC10.7575757575757576No Hit
ACTCGTGGGGCCCGATGGGGACCCTCAACCCCCCGCACGCCGCTCGTCTG10.7575757575757576No Hit
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC10.7575757575757576Clontech SMART CDS Primer II A (96% over 26bp)
TCTCCATGTTGGTCAGGCTGGTCTCAAACTCCCAAGCTCAGGTGATCCGC10.7575757575757576No Hit
CGCCGGGAAGGACGGGCGCTCAGCGGCGCGGCTTCCGGAGCGGCGCGGCT10.7575757575757576No Hit
CGCGTGCCCCGCCGCGCGCCGGGACCGGGGTCCGGTGCGGAGTGCCCTTC10.7575757575757576No Hit
CAGGTGCACCGAGAACAGCACGCCCTGCTTCTTGGCGTCTTCGATCTGCG10.7575757575757576No Hit
ACCGATACGCGCCTGCCGGCCGAAGTGCGCCTACTGGGGCTGGGCGGGGT10.7575757575757576No Hit
ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC10.7575757575757576Clontech Universal Primer Mix Long (96% over 26bp)
GAACAGCGGCGTCTTCACCGCCAGGCCGAGTCCGATCGCCAGCAGGACCA10.7575757575757576No Hit
TGCCTAGACAGTAGGGATGTAAAGGCCTGGGAGCTAGACCCTCCCCAAGC10.7575757575757576No Hit
GTCCTGGGAGGCGGTGGGTTCGAACGGGATCCAGCCGTAGCCGGGGAACC10.7575757575757576No Hit
CCATGGACTCGGCCCTCAGCGATCCGCATAACGGCAGTGCCGAGGCAGGC10.7575757575757576No Hit
TCACGCTGTCGGATTCCTCGGGTCAGTTCGAGGCGGTGGCGTTTTCCGAC10.7575757575757576No Hit
GTTCGCAACAAAGTCCCGGTCGGTGCGCACCCGACCGCCGAGCCGCTCCG10.7575757575757576No Hit
GGGTAAGGTCGGCCGCCGTCCCGTCGCCGGGGTCCGCGGCCGCGGCGACC10.7575757575757576No Hit
GGTTATGGTTCATTGTCCGGAGAGTATATTGTTGAAGAGGATAGCTATTA10.7575757575757576No Hit
GCATTGACAGATTGATAGCACTTTCTCGATTCCGTGGGTGGTGGTGCATG10.7575757575757576No Hit
GTGCACGGCTTCGTGCCGCAGAAGTCGATCGTCGATGATGCCGGTCCCGG10.7575757575757576No Hit
CCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATTCCCATGACCCGC10.7575757575757576No Hit
GGTCAGGAGTTCAAGACCAACCTGGCCAACATGGCAAAACCCTGTCTCTA10.7575757575757576No Hit
ACCGGGAAACGGTCACCGGACGACCTATCGGACGTCGGAAGACGTGTGTA10.7575757575757576No Hit
AGACTATGGTCTTCTGTATCTCCTCTTGCAGCCTCAGGAACTCGTCCTGC10.7575757575757576No Hit
CATCATCATCTCCCACAAAGTGAACCTCCAGCATCTTGTCTTCCTTTAAT10.7575757575757576No Hit
GCCTGATACAATATACTACCTTGTATTAAGGTCTCAAAATTCTCTCAGCC10.7575757575757576No Hit
GAACAAATCTGCACCCCACTTCAGACCTCGGTGGGCATTCACACCACCCC10.7575757575757576No Hit
TTTTCCACCCGTTCCCCGACACGCTGGCCTACACCGACGCCAACATCCCC10.7575757575757576No Hit
GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT10.7575757575757576Clontech SMARTer II A Oligonucleotide (100% over 25bp)
TCACCATCGTGGTCCGTGAAGCCGGCGAGGCCGCCTGATGGGTCAGAAAA10.7575757575757576No Hit
GATCCAGTCCACGTAGTTGAGCACTTTGGTGTAGAAGCCATAGCCCCTGC10.7575757575757576No Hit
GATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGT10.7575757575757576Clontech Universal Primer Mix Long (96% over 26bp)
CCACTGGCTCTGCTTTCTCCTTTCATTAATCCATTCACCCAGATATTTCA10.7575757575757576No Hit
GCCCCGTGGTCGTTGTTGCCGTACACCGCCTCGAGCCGCCGCGCGCGCCG10.7575757575757576No Hit
GAGATGGGCAGTCGGCGCGCCTCGGCGTCGGAGCCTGCGTCCTTCAGGAA10.7575757575757576No Hit
GGTCTATGTTCGGGGCCTCACCCTGCGCCACGAGGCCGACCTGAACGACC10.7575757575757576No Hit
GCCGAGATCGCCGCGCGCGCCAAAAAATTCGGGGTCCCGGTGGTCGCCAT10.7575757575757576No Hit
GGGTAAGGTCGGCCGCCGTCCCGTCGCCGTGGTCCGCGGCCGCGGCGACC10.7575757575757576No Hit
GTGTAGAACACTAATTAATTCATAATCACTCTAATTAATTGTAATCTGAA10.7575757575757576No Hit
GTCCTCATACAGTGCGCTGGACTGGATGGCCGGCCAGATGAACTCCTCCA10.7575757575757576No Hit
AGGTCACCAAGCTTCCGGAGCAGGCCAGCGCCTCGTCCGGCCGGTCGCGC10.7575757575757576No Hit
GATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTATGAACG10.7575757575757576No Hit
GTGCTGTCCGCCCCCGCCTGCACCTGCACGTAGTCGGTGAAGGTCACCGG10.7575757575757576No Hit
GCATTTATTCCGTCCCAGTGGGGAGGGGCAGGGATCCAGGTGGCCGGAGG10.7575757575757576No Hit
CTTCTAATACAGCATATTATGTACTATTCAATCTTTACACAATGTCGCGG10.7575757575757576No Hit
GGGCGTGCGTCCGCAGGAGCTGCTCACGCTCGGCGTGGCCGTGGTCGTGA10.7575757575757576No Hit
GGCCTACGGCGACGACGATGAGCACGAGTCCCGACACCTCGATGATCGTC10.7575757575757576No Hit
GGCTGGGAGCATGAACTTCAGGTCCAGGAAGATGGGTTTGGATCCAGTCT10.7575757575757576No Hit
GCGTGGGCACGGTCGCCGACACCGACACCCTCGGCCACCTGCGCGAGCTG10.7575757575757576No Hit

[WARN]Adapter Content

Adapter graph