FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003627148

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003627148
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences132
Sequences flagged as poor quality0
Sequence length100
%GC58

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTGATGATCGTCGAAGACGCCGCGGCCTGAGCGGCCGACCGGCAGTTAC32.272727272727273No Hit
TCTCCATCTGGTAATACGAACAGCCTTCCGCGTAAACCAGGTCGCGGCGC21.5151515151515151No Hit
GAAATATGTTGACTTAACAACTTTTCTTCTTTCTTTCTCTTTCTCTTTTT21.5151515151515151No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA21.5151515151515151Clontech SMARTer II A Oligonucleotide (100% over 25bp)
TCCTTTGGGTGTATACCTAGCATTGGGATCATTGGATCATATGGTCGTTC21.5151515151515151No Hit
CCCGAAGCGGTGGGCGACGAGCAGCCGGAAGCGGTCGAGTTCCTGATCCC21.5151515151515151No Hit
ATGGTATTCCATGTAATTAATAAATAAATCAAAATCAAATTTTTGAATTC21.5151515151515151No Hit
ATCCCAGACTGGTTCTTGAACAGACAGAAGGATGTAAAGGATGGAAAATA21.5151515151515151No Hit
CTGCGGGAGAGGTTTGACGATAAGCCGCCCGACGAGAAGGCTCAACGTGA21.5151515151515151No Hit
TTCTTGATTAATGAAAACATTCTTGGCAAATGCTTTCGCTCTGGTCCGTC21.5151515151515151No Hit
GCCGACTGCTGGATGAGCGCGAACTCGTTGACACGACGCGGGTTGTTCGA21.5151515151515151No Hit
GTCCCGGCTACACGATCCGCTGCGAGATCAACCTCGTGCCTTATGCTCGC21.5151515151515151No Hit
GATGTACCCGATCTACCCGAACTACCCGAGCGACGAAGGCTCGCCGCTGG21.5151515151515151No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT21.5151515151515151Clontech Universal Primer Mix Long (96% over 26bp)
CGGAACCCGTCCGAGCCTTATGACGGTCTCCGGCGGAACGCGTTCGACCG21.5151515151515151No Hit
GGGTACTCTTTTAAAAGTTAACCTGAGAGGCCGGGCGCGGTGGCTCACGC10.7575757575757576No Hit
GCGCCGCCATCGCCCTTGCCGCGGCCGCGCCGGCCCTGGCCCAGGTTCCC10.7575757575757576No Hit
CTCGCGGAGGGCGTCGAGGATCGGCCCCTCGGCCTCGTGCACGCCCATGC10.7575757575757576No Hit
CCGCGGGGATGACCAGCTTGATCGCGCGCACCCCCGTCCGGTCGCCGGTG10.7575757575757576No Hit
TCCATAATCCGCTCCGCGAACCGGTTGTCGCGGAAGTAGCGCGCCTTCTT10.7575757575757576No Hit
CGCAAGCAACCGCATCCATAATCCTTCTAATAGCTATCCTCTTCAACAAT10.7575757575757576No Hit
CCCCCCGTGGCGGCGACGACCCATTCGAACGTCTGCCCTATCAACTTTCG10.7575757575757576No Hit
CTCCGGGGACAGTGCCAGGTGGGGAGTTTGACTGGGGCGGTACACCTGTC10.7575757575757576No Hit
GTTTAGCGCCAGGTTCCCCACGAACGTGCGGTGCGTGACGGGCGAGGGGG10.7575757575757576No Hit
TACTACGCCTCGGCGATGACCGTGCTGCTGCGGCTGAACGGCATCCCCTC10.7575757575757576No Hit
GGCCAACTGACGGAAGATCTAGGCCGCGATCGGGAAGCACAGCATGCGGT10.7575757575757576No Hit
AGCCAGAACAGCGACGGGCCGGGCCAGTCCCACCCCAGCACCCAGGGCAG10.7575757575757576No Hit
GCACCACACCGGGCACCGCCTTGATGGCGCCGGCGATCTACGGCGAGACG10.7575757575757576No Hit
GCGTACAAAACGCCGGTGGTGTCGTTCCTCGTCGGATTCAGCATGCTCGC10.7575757575757576No Hit
CCCTCGCTCTCAGCGTGAAGATCGAGAAGACGGAGCCGGCGGAAGTCGCT10.7575757575757576No Hit
GGAGTGCAGTGGTGCAATCTCGGCTCACTGCAACCTCCACCTCCCTGGTT10.7575757575757576No Hit
CTCCGGTGCTCCTTACCTCCCCGGTGGTCGGGCGCGAATTACTGGAAATT10.7575757575757576No Hit
GTGCAGGCCCACCTCGTCGCCGTAGTAGATGCAGGGGGCGCCCAGGTACG10.7575757575757576No Hit
GGTCGAGATCGATCAGGGCGTGCTGCGCCCGCTGCAGATCGCCGTGGTGC10.7575757575757576No Hit
CTCTAGAAGATTAAGGGAATCCTTTTATGTAAAAGCAACGTCATTACTAA10.7575757575757576No Hit
CCCCAGCGCCTGGTCAGCGCGAGCGCTCCTCCACAGCCCGGGCAGGTGGC10.7575757575757576No Hit
AAAGAAAGGTTCATCTCTGTTAGTTGAATACACACATCACAAACAAGTTT10.7575757575757576No Hit
GCAGGGGCTATGGCTTCTACACCAAAGTGCTCAACTACGTGGACTGGATC10.7575757575757576No Hit
ACATTGGCCAGAAGGAAGACTTCGAGGAAGCCAGGAAGAAGGCACTGAAG10.7575757575757576No Hit
CGTCGCCGGGCATCTCCCAGATGCCGTCGCCCTCGAGCGGCACGTACTCG10.7575757575757576No Hit
GCTTCCCATGTACTCTGCGTTGATACCACAGCTTCCCAATAACTCTCCGT10.7575757575757576Clontech SMARTer II A Oligonucleotide (96% over 25bp)
CAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACCTGTCTC10.7575757575757576Clontech SMARTer II A Oligonucleotide (100% over 22bp)
CAGTCGCAGGAGTGGAAGGACGGCGAAGCGCTTTTCCTCCGGTGCAACGT10.7575757575757576No Hit
ATCTCGATTGGCTGGATTGCTGCCAAGACCCGTGATCGCGTAAGCGTTAC10.7575757575757576No Hit
ATAAAACATTTCATGTGCAATAAGCTCTCAATCAAGTAAATAAAGTTTAA10.7575757575757576No Hit
GAAATATTCATGGAGGAGATGAGAGAAATCAGAAGAAAACTTAGGGAGCT10.7575757575757576No Hit
GAGAACTCTCTGTGCTAGTAACCACGTTCTCCTGATCAAATATCACTCTC10.7575757575757576No Hit
GTGAAGTGGACATGTTGAAAATTAGGTCTGAATTCAAGAGAAAGTACGGC10.7575757575757576No Hit
GCTCCTCAGCCAAGCACATACACCAAATGTCTGAACCTGCGGTTCCTCTC10.7575757575757576No Hit
CCCAGAAGCAGGTCGTCTACGAATGGTTTAGCGCCAGGTTCCCCACGAAC10.7575757575757576No Hit
GTCTGCCTGTTGGGAACGATACAGAGCGTCACCCGCTCGGTCTTTATGTC10.7575757575757576No Hit
GCAAATGATAGGTGCTCAGTCAATAGCCTCTGTGTATAGTAACAGTTCTG10.7575757575757576No Hit
ACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTG10.7575757575757576Clontech Universal Primer Mix Long (96% over 26bp)
ATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTA10.7575757575757576Clontech Universal Primer Mix Long (96% over 26bp)
CGAAGCGGGCGCGTGACCTACCTCATGCCCTGTGGGGTGAGATCGAGGCC10.7575757575757576No Hit
TACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTAC10.7575757575757576Clontech Universal Primer Mix Long (96% over 26bp)
GGCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTCAGCTT10.7575757575757576No Hit
CACACACACACACACACACACACACACACACACACACACACACACACACA10.7575757575757576No Hit
GTGCGTGCGCCCGTCCTACCGGCTGGACCTCATGGCCTGTCTCTTATACA10.7575757575757576No Hit
TGGCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGATAACGA10.7575757575757576No Hit
ACACTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTG10.7575757575757576No Hit
ACTCCGATCGCCGCGCGCCGCTGTCGGTCAAGAACTACGCCCGCAAGCAC10.7575757575757576No Hit
CTAATGGAATCATTGAACAGAATTGAATGGAATCGTCATCGAATGAATTG10.7575757575757576No Hit
GCCCAGCAGGGCGCCGAGCGGCCAGGCGATCAAGGCCCCGGGGATGTTGG10.7575757575757576No Hit
GATTAATGGTAAGTACTCAAAAAGTTATAGCTGTTATTGTTTTTTAAACA10.7575757575757576No Hit
TCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGT10.7575757575757576No Hit
TTTAACTCCTCCAAGCTTCAGTGTCCTTATAAAAAATGAGGAAACAATAC10.7575757575757576No Hit
GGGCTCTGCGGCCTCGTCGGCGTCGGCGGGCTGGTGACGCTGGATGAGAC10.7575757575757576No Hit
GGGCGACTCCGGTGGTCAGCCGGCGCGCAGCACCCTCGAGGTGACCGTCA10.7575757575757576No Hit
CCAGAGGCCCGTGCCGGACGTGCTAGCCAACGGCGACGCTCTCCACGGGC10.7575757575757576No Hit
GCCATGCACCACCACCCACGGAATCGAGAAAGAGCTATCAATCTGTCAAT10.7575757575757576No Hit
ATCAGAGGCCCAGTGACACCCACAGCACAGGGAGGAAGTGCGTGGATGTC10.7575757575757576No Hit
TCCTTTCCCGTTGGAGCTTCCACTGACCCTGCTCACCGGAGGCGTCCTAG10.7575757575757576No Hit
CAGCTAAGAGCATCGAGGGGGCGCCGAGAGGCAAGGGGCGGGGACGGGCG10.7575757575757576No Hit
GTTCATCACGCGGTCGAAACCCAGCATCACGACCACGGCCACGCCGAGCG10.7575757575757576No Hit
GGGCGACTCCGGTGGTGACCCCGCGCCCCCCACCCGAGAGGTGACCCGCA10.7575757575757576No Hit
GAGGGGGACGGCGCGGCCGCGGCGTCCTCGGCGGGAGCGGCCTCAGCCGC10.7575757575757576No Hit
TGATCGGAGTGCTTGTCGGTCACGATCGTCTCCTTCGTCGTCGTACCCTG10.7575757575757576No Hit
GGGCATCCCAGCCCCTGGGCACCAGGGTCAGCAGCTGGGGCGTGTGCTGC10.7575757575757576No Hit
CCCTTCCCCCACCACCATAGACCGTCAAGAATGGAAGAGGTACAGGGAGG10.7575757575757576No Hit
ATCTCGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCC10.7575757575757576No Hit
TGTTCGAGCAACTGAACAGACTCGTCGGTTCAGCGGTATCGGGATCGAGT10.7575757575757576No Hit
GTGCGGGGTGGAGGCCCTGACTACCCTGGAAGTAGCAGGCCGCATGCTTG10.7575757575757576No Hit
GAAATGTTTTGAGTGTTATTTCAGAGAGCAAATGGCAAAGACTGGATCCA10.7575757575757576No Hit
GCTGGCGATGATGGGGAAGCGGGCGGCATCCCGGCTGGTGATTGTTTCAG10.7575757575757576No Hit
GCGCCGAGATGTCCTTGCGGAGCTTCTCGATGTCGGCGCCCTTCTTGCCG10.7575757575757576No Hit
CTTCTGCCGCGCCGGCGTGAGCGAGATCGCGGGCGGCGGCGAGATGCTCC10.7575757575757576No Hit
GAATCAGGATTTGAACTCAGGACACTAAAGTCCTCATACTTCCTGTGCAG10.7575757575757576No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGTGAAGCAGTGGTA10.7575757575757576Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GGCCCGCACGGACCCGACAGCGACTACGTGCACGTGCAGGCGAACCCGGC10.7575757575757576No Hit
ATTCAATCTTTACACAATGTCACGGGACCAGTATTGTTTACCCAATTTTT10.7575757575757576No Hit
GCACGGACGAGCTCCTAGAGACCGTCGGCATGGACCGCTCCTACAAGGAC10.7575757575757576No Hit
CGCGAACCCGGTCCGCACGCCGACCAACACTCATGTCATCAGGCGAAGCG10.7575757575757576No Hit
GGATGCGGGTCCTTCTTGCAAACCTTTGCTGCCGGTATTGATACCGATAT10.7575757575757576No Hit
CTGCAACACCGTGGCCGCCGCCAGGCCGAGCGCCAGCGCGCCGACGTGCG10.7575757575757576No Hit
GATCAGCGGACGAGAAGCTGGCCGAGTACGTGGCCGTGGCCTCGGCGGCG10.7575757575757576No Hit
CTCCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGAT10.7575757575757576No Hit
CTTCGACCTGTCGATCGTCGGGATGTACTTCGTCATCGCCGGCTGGGGAC10.7575757575757576No Hit
NCCAGAAGCAGGTCGTCTACGAATGGTTTAGCGCCAGGTTCCCCACGAAC10.7575757575757576No Hit
AATTAAAGTACGGAACTTCTGCACGGCAAAAGAAACTACCATCAGAGTGA10.7575757575757576No Hit
TCTTTATTCAGCTCAGGGGTGGGGTGGCTGGGAGCATGAACTTCAGGTCC10.7575757575757576No Hit
GTATCACAGCAGGTTACAACAACTTTGGGATAAAAGGCAACTGGTAAACT10.7575757575757576No Hit
GTTACAGGCAGAAACCGACCGGAGGACCTTGCAGATGCTTCGGGAGAACC10.7575757575757576No Hit
TCGTTGGTCAGTCGCTGCATCCAGTCGGGCGACATCACCGCCTACATCGT10.7575757575757576No Hit
ATTTAGAAATTCCTGAGACTCAAGTCGTAGTCGATGCGCGCGGCGAATCG10.7575757575757576No Hit
CTCTGGAGCACCGGCCGCATCGAACGCCGAGGGGGCCTGCTGATCTTCCG10.7575757575757576No Hit
ATACTGAACCTGATGATGAATGGGTGAAAAATAGGAAAGATGAAAGTCGT10.7575757575757576No Hit
GTTGCCGCGGCGATCCGCGTCGTTCCGACGTCGATCCCCAAGTAATACGT10.7575757575757576No Hit
GTTGGCGATCGCGCCGGTCATGCTGCTGGTCGACGACCGCGCGCTGCAGC10.7575757575757576No Hit
AAGTAAACGCTTCGGGCCCCGCGGGACACTCAGCTAAGAGCATCGAGGGG10.7575757575757576No Hit
CGACGGGATCGGGCGGGGACGGAGCCTCGCGGCGCGGCGAGCCGATCCAG10.7575757575757576No Hit
ATACTTGTCTTAGCTTGTTTTTCATTTTCTATCTGAAACTCTTGACAATA10.7575757575757576No Hit
GAATCAAAGGGAATCATCATCGAATGGAATCGAATGGAAATGTCAACCAA10.7575757575757576No Hit
CCGTTGTTGGCGGTGTCGCCGCGCCGGATCACCACCAGGTCGCCATCGAG10.7575757575757576No Hit
CAGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGGCAAAAGCTCGCTTGA10.7575757575757576No Hit
GTCTACACCAGCGTCTCGGGGTTCAGCGGCCAGGTCACCTTCCCCTACCG10.7575757575757576No Hit

[WARN]Adapter Content

Adapter graph