FastQCFastQC Report
Wed 31 Aug 2022
EGAF00003627170

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003627170
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences16
Sequences flagged as poor quality0
Sequence length100
%GC63

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTGCTTGGCCTGGGCTCTGGAAGCCGGCCAGGACCACGGTGTGTGGGGCG212.5No Hit
GGCTGTCACCGGTGGCCCGTTTGCGCTCTTGGAATACTGGATGAGCGGGA212.5No Hit
TTCAGGAGGTGCTGGAAGGCGCCCACATTGACCTGCGTCATTTCGAGCAC16.25No Hit
ATTCTGGCAGCCGTTGCGCTTGCGCTGACATTGCCGGCTACCGGATTGCC16.25No Hit
ACCGGCTTGTCCATCGCCTCGGCAATCTCGGGATAGCTGAGGCCCTGGTA16.25No Hit
CGTTGGGGTTGAGGAGGATGTCTCTCTGGGCGGCGTACAGGGTACGTGGG16.25No Hit
CCCTGTGGACAATCGCCTGACCTTCTTTAGCCTGGTGAGCCCTCGCTCCC16.25No Hit
GCTGTGGAGGTCATGGCCACGCCGGGAAGAAAGCTGAAGGATCGGGTTGC16.25No Hit
CCCGGTGCTTGTCCATCACCCGACTACGCGACCTACTGCTGGCCGATATC16.25No Hit
ATGCGTGTCCTTCCGGGGTTGGCTCCCTTCCGGAGTCTCAGCGTATCGGT16.25No Hit
AGCCTCGGCAGCCTGGTGAGCCAGTTCGATGGTGTGAGCGGTGTCATTGG16.25No Hit
GATCCTGCTGGCGACCGAGCCGGAAGGCCGTCCCGGTATCGACTTCGCCT16.25No Hit
TCGACGCCCAGAGTGGCCGGCAGGCGTTTCGGTACTTTGGCCGAATTCAG16.25No Hit
CCCAAACCCTTGACGAGACCGTCACCTTGGCACAAAAACTTGAGGAGATC16.25No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)