FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003627259

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003627259
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences59
Sequences flagged as poor quality0
Sequence length100
%GC53

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCTTTGCCCGGGGCGTTTCCTTTCCCGTTGGGGCTTCCACTGACCCTGC23.389830508474576No Hit
GTCAGTGCTGTCAGTGCCGCAGGTCCGGCGCATGGAAAACTCGCGCCCGG23.389830508474576No Hit
AACAGAAACTGCTTAGTAAATAGAACAATCTCTGAAAGTAGTGAACACCC23.389830508474576No Hit
GCCCGGGTTTGGGTGGTAAAGAACTTAACGCCTATATTACTGCGGGTATT23.389830508474576No Hit
CCTTATCAGTGTAGCCAGCTTTCCCAATAGCAGTCTTCAGCAGCTCCAGG23.389830508474576No Hit
GCCTGGCCCTGAGTGAGCACCTGGTTACCACTGCCACCTTCTCCATCGGC23.389830508474576No Hit
CTCGTTGCCCACTTCGCCCTTCACCTCGACGGTGTTGCCGCTGTCTCTTA23.389830508474576No Hit
ATGTCTGGGTGTATAAGGGCGATCAAGGGTTGTGTTCCCGCTTTATTACA23.389830508474576No Hit
GCCCTGTCTTTCGCCGAGAAGGGCCTGATCTAGTTTGTTGTAGGCTTGCG11.694915254237288No Hit
CCCTTATATTGAATTCCATTCTATTTCATTCCTGTTGACTACATTCCACT11.694915254237288No Hit
GCCCTTATGTGCTTTGGTGCATAAGCAAGCGCCGATTTGTTCGTTCCCTT11.694915254237288No Hit
ATCTCAAATTGATCCGTATTCCCATCTTGCACCACAGAGATATCCCTTTA11.694915254237288No Hit
GGACCACGGCACAGATCTCCAACTGGTTACCCCGGCGCTTTAAAACCAGC11.694915254237288No Hit
GTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGATAACGAACGAG11.694915254237288No Hit
GTCAGTAACTGGACCCAAGCACCCAGGCTTGCCCCGATCCGTGCCGTGTT11.694915254237288No Hit
GGATATCCCAATAAACATGATGAGTAGGCAGCTGGAGGTACAAATACAGA11.694915254237288No Hit
GGGCAACAGAGCAAGACCCTGTCTCAAAAATATAATAAAAATAAGGAGGG11.694915254237288No Hit
CTTCTGTCTGATTTATATTGAAGATATTTCCTTTTTCACCGTAGGCCTCA11.694915254237288No Hit
CAAAACCACTGGAAGAATAATTTGAAGTAAGAGATGCTCAAATCCTGATC11.694915254237288No Hit
CTGCGTGCCTGAATTTAACAGATCCCCAAAATCACCTTCCACTCTGTAGA11.694915254237288No Hit
GCCCCAGACCGTGCCCATGAGGCTCCGGAAGCTGCCCGACTCCTTCTTCA11.694915254237288No Hit
GTCCAGAAGGTTGGGGAGAGTGGTCGCCGTTTTGGGACTACGACCCGGTT11.694915254237288No Hit
GGCCACAGCTACTGCCGCGCTTTTTATTTATTTATTTACTGAGATGGAGT11.694915254237288No Hit
GTTGGGATTACAGGCATATGCCACCACACTTGGCTAATTTTTTGTATTTT11.694915254237288No Hit
CTTCTTGCCCGTCTGCAAAAGCTGCAAAAGACCCTTTGCCCGGGGCGTTT11.694915254237288No Hit
GACCCAGTCCGCTGGTAACGAGGAATCCTGTTATTGGGTCATTGACCATC11.694915254237288No Hit
CGCCTAAACATGGCAGAGGACTGAACACCTCCTCAGAAGTCAGCGCAGGA11.694915254237288No Hit
AGGCAGAGGGGCGAGATGCAGGCTCAGCACCCTCCGGAGGGGACCCGGCC11.694915254237288No Hit
GGTCAAGGATTGTAATATTGCCAGCTTTGTAAAGTCATTAAAGCAGAAGT11.694915254237288No Hit
TATCAACGCAGAGTACATGGGGAATAATTGCAATCCCCGATCCCCATCAC11.694915254237288No Hit
GGCCGCACCGTTTCAGTTCGATAGTTACGCGAGGTGTTCGGAGGCCCACG11.694915254237288No Hit
GGGCTTCAAGAGGACTGGCTAGAGGCACCCAGCACTCACCTCCTCCACAA11.694915254237288No Hit
GTATGTAGGAGTTGAAGATTAGTCCGCCGTAGTCGGTGTACTCGTAGGTT11.694915254237288No Hit
TGAAGGTAGCGGATGATTCAGCCATAATTTACGTCTCGAGTGATGTGGGC11.694915254237288No Hit
GCGGCTACCATATCCAAAACTATTTCACTGCCGTTTCTACTGGAAATCTC11.694915254237288No Hit
CGCCTATACATGGCAGAGGACTGAACACCTCCTCAGAAGTCAGCGCAGGA11.694915254237288No Hit
GAATGTGGCCATTGTTGAGCCCAGTGAGAGACATTTCTACCAGCCAATCT11.694915254237288No Hit
GGCCACAGCTACTGCAGCGCTTTTTATTTATTTATTTACTGAGATGGAGT11.694915254237288No Hit
CCACCATGCCTGGCTAATTTCTGTATTTTTAGTAGAGACAGGGTTTCACC11.694915254237288No Hit
ACTGTCATCAGTGTCCGAGGGCAGTCGATCTCCTCCTCCTGGGGGCTCTC11.694915254237288No Hit
GGAATGGGGAATTGCTGCTCGGAGAGATCCTGTGTGTGAGGCCCAGGCCT11.694915254237288No Hit
GTGATAACCAGGTGCTCACTCAGGGCCAGGCGTTGCTGGGCTTCCGGCGC11.694915254237288No Hit
AGCTGGAACCACACTTGCTTGCCATACAACCTCATAGCCGGCCCCAGGAG11.694915254237288No Hit
CCACGAGGCCAGTGGAGCCGATGGAGAAGGTGGCAGTGGTAACCAGGTGC11.694915254237288No Hit
TTTATTTACTGAGATGGAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGT11.694915254237288No Hit
GTGCTGCAAGTGACCACGGCGGTGCGTGAAGCCTGGCCTCAAGAGTTGCC11.694915254237288No Hit
CAAGTTCACTGTTTAATAAAAATGAAGTGACCTCTGAATCATCTCCAAGA11.694915254237288No Hit
ATGTTTTGGCTGGTGAGCACATTTCAGTTCTTAGGGGAAAAAAAGCTTTT11.694915254237288No Hit
AAGCTGGGCCAGGCAGAGGGGCGAGATGCAGGCTCAGCACCCTCCGGAGG11.694915254237288No Hit
CTCTTATACACATCTCCGAGCCCACGAGACGTGCGACATCTGATCGCGTA11.694915254237288No Hit
TGTAGGCGGTGAGCAGATCGCCGCTCTTGCCGATGAGTGGGGTGCTGAAT11.694915254237288No Hit

[WARN]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)