FastQCFastQC Report
Sat 23 Apr 2022
EGAF00003627315

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003627315
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences26
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GATTGATAGCTCTTTCTCGATTCCGTGGGTGGTGGTGCATGGCCGTTCTT27.6923076923076925No Hit
AAATAGAACCGCGGTCCTATTCCATTATTCCTAGCTGCGGTATCCAGGCG27.6923076923076925No Hit
GTGGTATACCAACCCAGAAACTCCAGCTCCTTGAACACCTGTTTAAACTG27.6923076923076925No Hit
CCTCAGATGTTACCCCAATGCTGCCATCCTTGCCCATACCATCACCCTTT13.8461538461538463No Hit
TATCCAAGATAGTGTAGGACTCGTCGCATTGGATGACGATGCCTAGTACT13.8461538461538463No Hit
AGGAAAGCCTTAGTAGAGGGAAAATCAAACCAAATGAGATTAAGTCAAAA13.8461538461538463No Hit
GAAGTTGACTTACTGAAGAATGGAGAGAGAATTGAAAAAGTGGAGCATTC13.8461538461538463No Hit
GTGGTGGACCTCATGGCCCACATGGCCTCCGAGGAGTAAGACCCCTGGAC13.8461538461538463No Hit
AATTGGCGCACAGTACTAGGCATCGTCATCCAATGCGACGAGTCCTACAC13.8461538461538463No Hit
CATTTATCAGATCAAAACCAACCCGGTCAGCCCCTCTCCGGCCCCGGCCG13.8461538461538463No Hit
GGCTTCTATGGCGAATGACAGTGGAAAGCTGTGTGTTGATTTCATGAATG13.8461538461538463No Hit
CCCGTTTTCTTCCTCCTCCTCCTCCTCACTTGGAACGTCCTCACCTCTGT13.8461538461538463No Hit
CGGGGATAATTGCGCGGTTTTGACTGCGGAAGGAAGCCAAGGCCCACCTA13.8461538461538463No Hit
GGATGGGAGAGCGGGTGGGTGCTGCCAATCTCCAGCTACTGTGGCCACAC13.8461538461538463No Hit
GCCCAAGATAGTTAAGTGGGATCGAGACATGTAAGAAGCATCATGGAGGT13.8461538461538463No Hit
GTCTCGCTCCGTGGCCTTAGCTGTGCTCGCGCTACTCTCTCTTTCTGGCC13.8461538461538463No Hit
GCAGAAACTCTGGAACTGTTTCCAGAGGGCCTGCACTGCATGGACCAGGG13.8461538461538463No Hit
CCCTATTTCCTGCTCAACACCCACTCCTCCTTTCCCACTTCCTGTTACTT13.8461538461538463No Hit
GAACCAGTCAGTGTAGTTGGAGACGCCACAGCAGCGGAAGTCGGTCTGGA13.8461538461538463No Hit
AGATTGACTTAACCTGTTGACAGATCTTCAGAGAAACTGCTGGTAGGAGG13.8461538461538463No Hit
CAATAGAGGAAAAGGGAATGAGAGAATGCAAGAGCACAGAGAGAACAGGA13.8461538461538463No Hit
GCTCTAGATTGAGAGAAGAGACAAACACCTCCCAGGAGACAGTTCAAGAA13.8461538461538463No Hit
TTATTAATGACAGCGGTTTCTCTCAAGGAAGTGTAGTGCCCTCCCCTTTG13.8461538461538463No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)