FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003627334

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003627334
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences72
Sequences flagged as poor quality0
Sequence length100
%GC61

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCGTTGGTGCCATTGCTGCGCCCATGATCACTTCACCTTGGTTACGAACT45.555555555555555No Hit
TACCTGGGTCTGGCGATCATGTTCGGCGTGCATGCCGTGCTGCTCACGCT34.166666666666666No Hit
CGTTGCTGGTCAAGGGCGTCTGCGAGGCCCGCTCGGGCCGCAATCTCGTG22.7777777777777777No Hit
TGCGCGAACTGGGCCTGGACAAGGGTGTCGAGAAGGCCGCATCAGCCATC22.7777777777777777No Hit
GTCTGTCTTACGACGTCGTCAACCTGCCAATGAAGAAAAAGGCAATCTCC22.7777777777777777No Hit
CCAACGTCGCAGCCCATGATGTCGGATAGGACGTCGACGTTGCGCGCCAG22.7777777777777777No Hit
TTGTGTACCCGTCTGCCATCTCGAATGCTCCATACGCGATGACCTGGCCC22.7777777777777777No Hit
TCCTAAGGGCGAGACGCCGGACCTGACGGCGCTTCAGCATCCGGAGTTCC22.7777777777777777No Hit
GTCGAGCAGCGCCTCTGGCTTGCTGATCCTGCCCGAGGTGCAGAAGCTGC22.7777777777777777No Hit
GCCCAGGGCGAAGGAGGCCTCACGCAAAGAGTCTGGCACGAGCTTGAGCA22.7777777777777777No Hit
CACTTTGGGAGGCCAAGGCAGGCGAATCATGAGGTCAGGAGTTCGAGACC22.7777777777777777No Hit
CTGGTATTGGCCGCGCGCGCGGATCTGGTTCTCCCAGCTCGTGCGGTCGC22.7777777777777777No Hit
CCCATGCCCTCTTCTTCCACTCCTCCAACAGCCTGCGCCAGTCCCCAGCG22.7777777777777777No Hit
GTCCTTCAACGCGGTCAACCAGATGCGCGTGCTCGGCCGCTGGATGCGGA11.3888888888888888No Hit
TCTTTGGATTGACATGCAAATCTGTTTCAGGATTCTCACATTCAGGACCG11.3888888888888888No Hit
GCCCAAGTCATGAAAAATTGCCCTATGTTTTCGCTCCGCTCAAACTCTAT11.3888888888888888No Hit
GCGTTAAAAAGGCGTTGGCGCCGCATGCACCGTTATGAGGCCGTCACATG11.3888888888888888No Hit
CCCCCGGCGTCGAGAGCTACTGGTTTGCCGATTACGTGGCCGACCTCGAA11.3888888888888888No Hit
GCCACGCGGTGTAGATATCAGGCTCCGCCATGTAGCTCTCATATCGCCGC11.3888888888888888No Hit
CATGGGACCATGGCCGAGTTCCCGGACGACGCAGCAATAAAAATCTCGGA11.3888888888888888No Hit
GGCAAGGAAGTCTGCGTCTGCGGCGAAATGGCGGGCGATCTGAGCATGAC11.3888888888888888No Hit
GTCTTGAGCACGTTGAAGACGGGGTTGTCGTTGTCCTTGCGATAGGCCAT11.3888888888888888No Hit
GGCGCAACCAGCGTCGCTTCGGCCTGTTCGTCAACGACAAGCAGGAAGCG11.3888888888888888No Hit
GGTTGCAGGGCATGGCCGGCGCGAGCCTGGGCTCGGGGCACCAGTGGGTT11.3888888888888888No Hit
CGTCTGCGGTAGGTGTCGACCGTCATGGTCAGCACACCGTCGCGCAGCGC11.3888888888888888No Hit
CCAGGTCGGCGCGTTTGCCCTCGCCAATCACCCCGCGATCCTGGAGATTA11.3888888888888888No Hit
GTCTTGCTGTGCGCGAGCCCCTCGCGCTTGTCCACGCCTTGATAGCCCGC11.3888888888888888No Hit
CCCAGATGTGGAGGTCATGGAAGCTTTTTACCCCGGGCGTCGCCAGAATT11.3888888888888888No Hit
AGTATACTGAGATGAAAATTAACGCTTAATACAATCTGGAAACAACCCAA11.3888888888888888No Hit
GACTGGGCCACGCCAGTGCAAGCCATGGCAGCCAACCCGCTGGTGCTGGA11.3888888888888888No Hit
GGTGTACAGGCCGTTCACGCGCCCCCGGACCTCGGGCGGCAACGCGTTGA11.3888888888888888No Hit
ACCCAGGCGCAATGGTCCGCGTCCTTCGACACCTTCCTCGCGGCCACCCG11.3888888888888888No Hit
GTCGGTGACGATGCGCTGTTGCAACAGCGCCTCCCGCAAGGCGCGCTCCA11.3888888888888888No Hit
GTGCCACAGGTTTGGTTTTAGGGCCCATACTAATGACCTCATTTTAACTT11.3888888888888888No Hit
GCCAGGAACACCGCGCCAAGCACGACGAAGGTGACATGGCCATGGGTCAG11.3888888888888888No Hit
AAAAAAGCCCGCTCGGGGCGGGCTTCTTCGGGAATGCAAGGGCGGCTTAC11.3888888888888888No Hit
GGGATCTGCAGTGCGTCGGCAAGGTGCCGCGCCTGATGGCCGGCGACGTG11.3888888888888888No Hit
AATGGGACTCACGCACCTGCCGTCAATGGCGCGCTATCCCGCACTTACGC11.3888888888888888No Hit
GGCGGGTACGTTGTCCCCGGAGCTTCACACCGAGCAGTTGCCCGCTCAGC11.3888888888888888No Hit
GGTTCAGGCAGCGAGCGCCGTGATGCGGGCGCGCGGCAGCGCATCCTCCA11.3888888888888888No Hit
AACGAGGTGGCTGTCGAAGCATTTTTACAGCGCCGCATCCGGTTCACCGA11.3888888888888888No Hit
GGATATCACCCTACCCGGCGGCCCATGCCGCAAGGTCGTCTATCCCGCAC11.3888888888888888No Hit
GAGTCGATCTCCGTCGTGGTCGCCGATCCGCAGGGCGCCGGCGACACCCA11.3888888888888888No Hit
GTCTCAAGTGCGCGCATCAGCTCGGCTTCGACTGCCACCAGCGCCAGCGG11.3888888888888888No Hit
GGCGTTCGATATCGGCACGGGCACGGGCGTGCTGGCAGCGGTGCTCGCCA11.3888888888888888No Hit
GACCAGCCCGGCGACGCATGCACCACCCAGGATTCATCGACCATGACGCG11.3888888888888888No Hit
GCGGAACTGCTGATCCTGCGCAGCGACATGCCGCGTTCGCTGCTGGCCAG11.3888888888888888No Hit
GCATCGCGCCGGGTCAGGCTGGCCAGCTCGTTGCTCACACGCAGGTCGTA11.3888888888888888No Hit
GTCGTGCACCACCCAGCCCTTGGCCTGGGCGATCAGGTTCTGGCGCTTTT11.3888888888888888No Hit
CGGTTGGGATAGGCATTCGGCTGCGCCAGCTGGCGCGTGATGCGGCCGAA11.3888888888888888No Hit
ATGCCACACCGCACAGGAACAGCACATAGGTGCTCACCACCAGCGGCATG11.3888888888888888No Hit
TTCCTTACGAAAAAGGATTGCTGGCGCATTCTGATGGCGACGTGGCGCTC11.3888888888888888No Hit
TGCTGCGGCAGGCCGGGGTAGTAAACACGTGCCACCTTCGGTTGCGCGGC11.3888888888888888No Hit
CCAGGTCGGCGCGTTTTCCCTCGCCAATCACCCCGCGATCCTGGAGATTA11.3888888888888888No Hit
GCTCGGCATCGGCAGTTTCGTCTATCGCCGCCGCGTGCCGTTCCACCCGC11.3888888888888888No Hit
CACAATGCCAAAGTGCCCTGACTCGCGCCTTACACCGCGCGGCGCACCAT11.3888888888888888No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)