FastQCFastQC Report
Tue 10 May 2022
EGAF00003627381

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003627381
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences708225
Sequences flagged as poor quality0
Sequence length100
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCTGGGACAGTGTGGCTCGTGTCCTTCCCAACGGCTCCCTCTTCCTTCC11230.15856542765364115No Hit
CACACACACACACACACACACACACACACACACACACACACACACACACA10510.14839916693141303No Hit
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA9130.12891383388047584No Hit
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCA8520.12030075187969924No Hit
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT8300.11719439443679622No Hit
TCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATT8220.11606480991210422No Hit
GTAGTAGGTGCTCAAAACATCACAGCCCGGATTGGCGAGCCACTGGTGCT8050.11366444279713368No Hit
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTA8030.11338204666596068No Hit
GTGTGGCTCGTGTCCTTCCCAACGGCTCCCTCTTCCTTCCGGCTGTCGGG7970.11253485827244167No Hit
GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT7900.11154647181333616No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT7780.10985209502629813No Hit
GTCTCAGGGTGTCTCCTGGTCTGTTCCTTCACAGATACTCCCTTCTCATT7580.10702813371456811No Hit
GGGTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGAC7560.10674573758339512No Hit
GCCTAGTACTGTGCGCCAATTAGGTCGTCATTGCGCCAGCTCGTCAGCGC7480.1056161530587031No Hit
ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCG7300.10307458787814607No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)