FastQCFastQC Report
Tue 10 May 2022
EGAF00003627382

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003627382
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences708225
Sequences flagged as poor quality0
Sequence length100
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCTGGGACAGTGTGGCTCGTGTCCTTCCCAACGGCTCCCTCTTCCTTCC11540.1629425676868227No Hit
CACACACACACACACACACACACACACACACACACACACACACACACACA9700.13696212361890642No Hit
GTGTGGCTCGTGTCCTTCCCAACGGCTCCCTCTTCCTTCCGGCTGTCGGG8290.11705319637120971No Hit
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA8200.1157824137809312No Hit
TCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATT8150.11507642345299869No Hit
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCA8010.11309965053478768No Hit
GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT7770.10971089696071165No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT7560.10674573758339512No Hit
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT7490.10575735112428959No Hit
GTCTCAGGGTGTCTCCTGGTCTGTTCCTTCACAGATACTCCCTTCTCATT7390.10434537046842458No Hit
GTAGTAGGTGCTCAAAACATCACAGCCCGGATTGGCGAGCCACTGGTGCT7340.10363938014049208No Hit
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTA7330.10349818207490556No Hit
ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCG7190.10152140915669457No Hit
GCCTAGTACTGTGCGCCAATTAGGTCGTCATTGCGCCAGCTCGTCAGCGC7110.10039182463200255No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)