FastQCFastQC Report
Sat 23 Apr 2022
EGAF00003627471

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003627471
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences19
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAATTAATAGAGGCAGAAGGAATAGAAGATATAGAAAAAGAGGACATCGA210.526315789473683No Hit
TCCTACGTTTACCTGTCCATGTCTTACTACTTTGACCGCGATGATGTGGC210.526315789473683No Hit
CAGGCACTGAGTTTGAGGAGGCCCAGAGTTCAGGGCTGTTTGGAGCGAGG15.263157894736842No Hit
GTGTCGGCATCTGGCTGGCCGCCACACAGGGGAGCTTCGCCACGCTGTCC15.263157894736842No Hit
CTACAAGGAAATGTACAAGACTGATCTGGAGAAGGACATTATTTCGGACA15.263157894736842No Hit
CGTTAAAGGATTTAAAGTGGACTCATTCCAATTACAGGGCCTCGAAAGAG15.263157894736842No Hit
CTTGAAGACATGGAACAGGCTCTCAGCCCTTCTGTTTTCAAGGCCATCAT15.263157894736842No Hit
GCATTATCCTCCTGCTTGCAACTATAGCAACAGCCTTCATAGGCTATGTC15.263157894736842No Hit
AGTGTTCTGAGGACACTGCTGGGGCGGGGGCGGTGGCGGGAGGCCATGGC15.263157894736842No Hit
GGGCAGCACAGTCATTTAAACTTGATCCAACCTCTTTACATCTTACAAAG15.263157894736842No Hit
TTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATG15.263157894736842No Hit
CCATCACACCATGTGGAAAAGGGAGATCTGCCTGTCACCCTCCTTTCCAG15.263157894736842No Hit
CCCTACAGCTCTCTCTCTTCGCTGGTCAGTGTGGCAATTCTCCGCAGGTT15.263157894736842No Hit
TTACAGGGCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTCC15.263157894736842No Hit
GGACAGGACGTCCGGGAACGTGGAAGACGACTTGATCATCTTCCCTGACG15.263157894736842No Hit
ATACGAATGCCCCCGGCCGTCCCTCTTAATCATGGCCTCAGTTCCGAAAA15.263157894736842No Hit
CTTGCTCTGTGCAGATTCAGACCGTGCTCTCCATTCCACTGTGAGAGGGC15.263157894736842No Hit

[OK]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)