FastQCFastQC Report
Wed 27 Apr 2022
EGAF00003627583

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003627583
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences802787
Sequences flagged as poor quality0
Sequence length100
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG17160.21375532986956688No Hit
GTATATAAGCCTATGTATTTCAGTAATGCTGCTACAGGGGGATACAAAAT14100.17563812069702175No Hit
ATATAAGCCTATGTATTTCAGTAATGCTGCTACAGGGGGATACAAAATCA12460.15520928963722633No Hit
CTCTAAGCCTGTCCACGAGCTCAATAGGGAAGCCTGTGATGACTACAGAC11880.1479844591404694No Hit
GTACAGTGAAACTGCGAATGGCTCATTAAATCAGTTATGGTTCCTTTGGT11200.13951396821323714No Hit
CTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGACTTGCCCTCCAA10970.13664894922314388No Hit
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAG9680.12057992967001209No Hit
CCCTGAGACTGACCTGCAGGACGAAACCATGAAGAGCCTGATCCTTCTTG9410.11721664650772871No Hit
GCCTAGTACTGTGCGCCAATTAGGTCGTCATTGCGCCAGCTCGTCAGCGC8810.10974268392487671No Hit
TTCTAGAGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGA8510.10600570263345072No Hit
GTACTAGGCATCGTCATCCAATGCGACGAGTCCTACACTATCTTGGATAT8400.10463547615992784No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT8370.10426177803078525No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)