FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003627693

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003627693
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences88
Sequences flagged as poor quality0
Sequence length100
%GC49

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TATCAACGCAGAGTACATGGGGAGGGGTCGGAGGTCAGGGCGAGCGTCTC22.272727272727273No Hit
TATTAATATAAAATAAAATGCAAAGCAAGTATTCACTGTTTCACTCCTCC22.272727272727273No Hit
GCTTCCCCTGTACTCTGCGTTGATACCACTGCTTCCCCTGTACTCTGCGT22.272727272727273Clontech Universal Primer Mix Long (96% over 28bp)
CGCCGTGCCTACCATGGTGACCACGGGTGACGGGGAATCAGGGTTCGATT22.272727272727273No Hit
GCGATACCCGCCACTGCATGAGCAGAGCCGTTGGGATTGCCGGGGTAAGC22.272727272727273No Hit
TTCTTCTACTGGTACCAGCTGCTGTGGGTTCCCGTCACGGCACTGCTAAT22.272727272727273No Hit
CCTTGGGCCCGCGGGAGCGGGAGGCTGGACCCCAGCAGCAGCAGCAGTCA22.272727272727273No Hit
GTCTCCAACCTGACTAGGTGGACAGAGCTCAAAGAGGCCCTCTTACCGCT22.272727272727273No Hit
CCATATAGTCAATCAGTCCCCTTCCTTCAACATCAGGTGGTACCACACAT22.272727272727273No Hit
ATGCTATGGAAGCGCTTTCCGAAGATGCAAGAGCCGCAGTAAGAAACCAG11.1363636363636365No Hit
CCGTAGACCCGGGTTTTCAAGCGGAATGTTTTCTTAGTTCTTTCCTATCC11.1363636363636365No Hit
GTTTAACCTAGGCCCTGCGACGCCACCCATATCATCATAAGCGTGACAAC11.1363636363636365No Hit
ATTGATACGTGGGGAAACAGCAGATCATTGCCAGAATTTTTAAAAAGATT11.1363636363636365No Hit
GTCTCCAACCACACTATCTACCCATCACAGACCCCTTTCCTATCACTCAA11.1363636363636365No Hit
GAAGTTTCCATTCCATTGCATTCCATTCCATTCCATTCCCCTGCACTCGC11.1363636363636365No Hit
AGAGAGGATCTTATCTGGTGCCTGAACAACATGATGCGTTTTTACGGGGG11.1363636363636365No Hit
CCAGTACCCCATGTAAACCGCCACCGCGGTCACTTCGGCGCCGATCACGA11.1363636363636365No Hit
GGTAGAGACTGTGATGAACAAACACCTTGACAAAATTCAACCCAAAGACT11.1363636363636365No Hit
GCTCAGGGGAGGTCGTGTTGCCGAGCACCGGCGTGTCGTCGATCTTCCAG11.1363636363636365No Hit
ATCTGAGAAGCCAAGGAACCTTTGTTATTGCCTGGGAAGCTTCGGTTAAG11.1363636363636365No Hit
CTACGGACGGATTGCAGATTAGGGGTTGCAATCCGTCCACACCCGATGTA11.1363636363636365No Hit
ACGAATAGCTCGTAACCAAACATGCACAGCGGTCAAACAGTATGTCCCAA11.1363636363636365No Hit
GCTTACATGTCTCGATCCCACTTAACTATCTTGGGCTGTGACAAAGTCAC11.1363636363636365No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG11.1363636363636365Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GCGCGGGAGTTGGCCGCGATGGTTCATCTGCGTGCTTAGTGTTTGCGCGT11.1363636363636365No Hit
TTTCATGGAAGATGGAGTTGGTGACTTCAGGAAGCTCCTTGTGGAGAACA11.1363636363636365No Hit
TCTTGAAGGTTGCTGTCATATATGTGTTTGTGTTTCTTATATTATTTCCT11.1363636363636365No Hit
GAGCGCGAGCGCGTGATCGCGCAGCACGAAGCCGCGCTCGTTGGCCACAC11.1363636363636365No Hit
GTCTCATACAGAGGAGCTGTGTGACTTTCTGGAATTATAGAAATATCCGC11.1363636363636365No Hit
GGCCTTGCCGAAGCAGGCTTCACGCCGGGCATCTACCTGTACTTCACGCA11.1363636363636365No Hit
GGTAGCTTACTGGTTGTCCTCCGATTCAGGTTAGAATGAGGAGGTCTGCG11.1363636363636365No Hit
GAGTATGGCTCCTTCCTTTAGCATGTTGCCGTTAGCCTCCATCACAAGAT11.1363636363636365No Hit
CCCTGTAATTCACTCCTGGAGCCCGGTGAACTACTTTGGAGGCTACCGGT11.1363636363636365No Hit
GTTATTGCTCAATCTCGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGT11.1363636363636365No Hit
GTGTGAAGTTCTTGCTCTACGTCCTCCTGCTGGCCTTTTGCGCCTGTGCA11.1363636363636365No Hit
TCAAAGGGAAGCCCAGCAAGCCCGCATAAAAATCTTCCGCAGTATCTAAG11.1363636363636365No Hit
GAAATAAAACCAAGCATGAGCATGGTGGCTTATACCTGTAATCCCAGCAC11.1363636363636365No Hit
AAATAAACTGCTTCGTGAAATCTTTTACAGCCAAGATCTCCCTGTTTTTC11.1363636363636365No Hit
GTTCACAAGAGAGACAGAAGAGCATGAACCCAAAAGACACATGCCCCAAA11.1363636363636365No Hit
GTATGATTACCGTGAGCCTCATGCCACATCCCAAATTGCTTCTGCAGCCT11.1363636363636365No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT11.1363636363636365Clontech Universal Primer Mix Long (96% over 26bp)
CTCTTCGGCCGCTGGGAGATCCGCCTGCCGCCGCCCGGGTTGGCCGCGCG11.1363636363636365No Hit
CTACAACCCTGCGCAAGATCGACGGAAATGGTTCACCCAACTGATGTTCG11.1363636363636365No Hit
CAATGGCACCGAGCCCTTCCCCGAGGCACAAATAAGGAGCCTGCTTTCCC11.1363636363636365No Hit
TTTCTTCCCCGCTGGTATCATCGGCAAAGGCCAAAAAGTAATTTCTCGGA11.1363636363636365No Hit
AGACAGGCCCGTGAGGCGTTTGGCATTGCCCTGGGCGAACGCTGGCGCAG11.1363636363636365No Hit
CGGCACCACCTACCCGAGCGGCTGCCAGCTGCGCGCCGCCAGCCAGAGGG11.1363636363636365No Hit
ACACTATAGTCATCGTCCATAACACGATCTAGTGAAACCTTCAAGCATGA11.1363636363636365No Hit
TCCCAAAGTGCTGGGATTATAGATGTGAGTCACCGCACCTGGCCTAATAG11.1363636363636365No Hit
GTCTGGGCAACAAGAGCGAAACTCTGTCTCAAAAAAAAAAAAAAAGTTTC11.1363636363636365No Hit
AGCGCATTGTCGCCCGGCTGGAAAGCGGGGACGCCGCATTGCAGGAGGCG11.1363636363636365No Hit
TCTTCGAACGGACCCGAATGGAATCATCTAATGGAATGGAATGGAATAAT11.1363636363636365No Hit
GTTTATGAAAGCCTCGGGCCACACGTGAGGAACTCTGAGTTATATAACTA11.1363636363636365No Hit
CTTCTCTTCTCGCTTCATTTCATTCATTTCATCTTCCATCACTGATAACC11.1363636363636365No Hit
AATCAACGCAGAGTACATGGGGAGGGGTCGGAGGTCAGGGCGAGCGTCTC11.1363636363636365No Hit
GTGTTCACACAGACATATTCATTCTCACTCACAAAGTGGCTGCAGCATAG11.1363636363636365No Hit
CTACAATATGGGCGCCGTCGCCGCTTTCCCATTGGGGAGGGATAGAAAAG11.1363636363636365No Hit
GGGCTACTACAAGCGCCCCGAGCAAACCGCCGAGGTGATGGACGGCCCAT11.1363636363636365No Hit
ATGGACAGGCCACGGCAGGAGATGCCTGGAAAGTAGAAGATGGCGTGCTT11.1363636363636365No Hit
GCTGGCTGATAGGGTTTGACGCTCGGTCCGCCTATTTCCTTCACCAACAA11.1363636363636365No Hit
GCTGGATTCTTCCTCTTGGATCTCTCGAACTCTTCAGTCCCCCATGTGTA11.1363636363636365No Hit
ATAATAGGCGGTATCGAGCAGCAGTTCGCCGCGCTGCGTGAGGGTTAGGA11.1363636363636365No Hit
CAACCGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGT11.1363636363636365No Hit
CCTCCTCTGCTTTTTTACGGTCTGAGATATCAATCCCGATGCCCTGAATT11.1363636363636365No Hit
GAGGCTCAGTGTGGACAAAGACAAAAGCGGCCTTTGAGAACTGGGAAGTT11.1363636363636365No Hit
TGATAGGACATTGTTAGCATAGAGGTCCTTCCTGATGTCAATATCACACT11.1363636363636365No Hit
TCATTAAGTTTTGACAGAGGAAGGGATAAAGTTTTCTCAAATGAACCGTC11.1363636363636365No Hit
GAGCAGCTAAAGGAACAACGGAAGTCCCGAGAAGCTACAGCAATACCTCA11.1363636363636365No Hit
GCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCGGAGGTTCG11.1363636363636365No Hit
TTTTTAAACAGGCCCTATATATCTACTCTGATTTAGCTTTTTAAGTGACT11.1363636363636365No Hit
GTCTGGGCAACAAGAGCGAAACTCTGTCTCAAAAAAAAAAAAAAGTTTCT11.1363636363636365No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGTTTTTAACCCAGCGT11.1363636363636365No Hit
GTGTTGATCTGCTTTCTGTCACTGCTTTCTAGTTTGTATTTTCTAGTTTT11.1363636363636365No Hit
GTACATGGGAAGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAA11.1363636363636365Clontech Universal Primer Mix Long (95% over 21bp)
GTGCGGGGTGCTAGGGCCGTGATCTCCTTCTGCATTCGGTCGGCAATGCC11.1363636363636365No Hit
TGCGTAGACTGATCTGTTCATTGAATGAACAAAAGAATAAAATCATTTAT11.1363636363636365No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGTTT11.1363636363636365No Hit
CCCCACATTATCCCCCATTCACAACAGCGTCACCAATCACCGAAAAGAAA11.1363636363636365No Hit
CCGTAACGGCAAGCTTTTATACCTGTATATCAGCAAGAAGGGTAGGTTAT11.1363636363636365No Hit

[OK]Adapter Content

Adapter graph