FastQCFastQC Report
Sat 23 Apr 2022
EGAF00003627776

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003627776
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences27
Sequences flagged as poor quality0
Sequence length100
%GC59

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTTATCGCTGATGGTGGCGTCGATGTAGGGCGAACCGGTCATGGTGTGGG27.4074074074074066No Hit
GTCCTTCCACAGCCCGCACTCCTTCAGCAGGTCGACGAACTCCTGGGTCT27.4074074074074066No Hit
CGACCGTAGTGATGAATCTCTCCTGGCGGGAACAGCGAAATATCACCCGG13.7037037037037033No Hit
TGCCATACGTGCAATTGCATGTACACATGCAATTTTCATGTCTTCATTAA13.7037037037037033No Hit
GGCCCTGACCGAGGGCTTGCCTTCTATCATCGAGGCTCTTGAAGAACAGG13.7037037037037033No Hit
CGCATCAGCCGCTGATCGTGGCGCCGCTGGGCAACGACGCCATCCTGCGC13.7037037037037033No Hit
TACTGGACCACCGGCCAGCCCGGGCCCGGAGGTCCCTGCTCAGAGATCTA13.7037037037037033No Hit
CGACCGGGACGATGAAGGACGACGACCAACAGACAAGCATGCGCGTTCCA13.7037037037037033No Hit
ATTTTTATTCCTTCATGCTGGGTGTGTCCAGGCGAAATGCTTTCCGATAT13.7037037037037033No Hit
GAGTACATCGGCGGTGGCCACGCGAGCCCAGAACAGGAAATAGAAGGTGG13.7037037037037033No Hit
TATCATTGCCTTCCGGTGTCCATACGTTCCGCGCTATGTAGTTGTTACCC13.7037037037037033No Hit
CCGGTGGGCTGCTGTTCGCCCGGGTCACGGAACCGATCACGCGGAGCGCG13.7037037037037033No Hit
CCACATGACCTTCGCGGGCCGCTTCGACCCCTCCAAGCTCAGTCTGCGGG13.7037037037037033No Hit
CCCCCGCCCGGCCCCGGTCACCACCAGTACGAAACTGAAGCCCTCACTGG13.7037037037037033No Hit
ACTGCAAGCTCCGCCTCCTGGGTTAACGCCATTCTCCTGCCTGAGCCTCC13.7037037037037033No Hit
CGCCTGGTGTACGTGGCTGACCGGGAAGCCGACTTCGGTGCGTTGCTGGG13.7037037037037033No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG13.7037037037037033No Hit
CTTCCTGCTGCCATCACTACGGGCGTAGTGCTGTGCGGTGCCGTCATCGG13.7037037037037033No Hit
ATGAAGTGGGTTGCTACTGCGTTTACATGACATACAAGAACAAGACTGTT13.7037037037037033No Hit
CAAGGGAATATTGCGTATGCATCAGGTGTCACCCTTGAAGTTCAAAAAGC13.7037037037037033No Hit
CCTAAGCGGGCTCCCGGCACAGTTCACTCGGAACCTCGGCGAGCGTCGTC13.7037037037037033No Hit
CCTTTGACATCTCGAACTCATTGCGCGGAGCCCGCGGGGGATTAGGGGGT13.7037037037037033No Hit
CCAGTGAAAATAGGAAAAATTCGCTAGTCGAAACCTGCCACAAATGCACG13.7037037037037033No Hit
GATTCATCTTGAAGCTGAGCGTATGGATGGCTTGGTGCTCCAAGAAAAAT13.7037037037037033No Hit
GGGATATTGAGGAACACATGCTGCAAAATGCTGCCTTCTGCTCTTTTTGC13.7037037037037033No Hit

[WARN]Adapter Content

Adapter graph

[OK]Kmer Content

No overrepresented Kmers

Produced by FastQC (version 0.11.5)