FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003628025

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003628025
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences144
Sequences flagged as poor quality0
Sequence length100
%GC61

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CTGGCTGGATAGGGCGCGGGGCGCTCGTTTCGGCCGGAGACGCGACGGTC32.083333333333333No Hit
AGCCAACACAGGCCTGGAGCATTGCCTGTGGTATGGCCTGCTCGCTGCTG32.083333333333333No Hit
ATCCTGATCGTGGTGTTCATGATCGGCGCGGGCGGCGGTCTTGGCACCGT32.083333333333333No Hit
GTCTGAACCTGCGGTTCCTCTCGTACTGAGCAGGATTACCATGGCAACAA21.3888888888888888No Hit
TGGTGGTGGTCCTCATCGTCGTGGTGATTGTGGGAGCCCTGCTCATGGGT21.3888888888888888No Hit
GTACAGCCAGCCGACCGGCGACGAGGGCGTGGTCGATCAGGAGGCCCATG21.3888888888888888No Hit
CGCCGATGGCGTGGGTCGTGACCTGAACGCCTGCGTCCAAGGCTTTGCGG21.3888888888888888No Hit
GCCACGGGCTGCGCTGGGGCGTCGACCGCCCCGTCCGCAGCCCGTGGCTG21.3888888888888888No Hit
GGCGAGCTCAGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGGCAAAAGC21.3888888888888888No Hit
GCCCTGGAGCGGGCGCTGCGGCGCGCGCAGGTGCCCATGGCCTTCTCCGC21.3888888888888888No Hit
GTCCTACACTGCTGGTGGGAATCTGAAATGATGCGATGGCCTTCAGCAAC21.3888888888888888No Hit
AGTACATGGGAGAGGAGCTATGGACGTCTGCTTCTCTGCCAAGGGAGAGA21.3888888888888888No Hit
ACTCCAGCCAGCCGCCCGCCTTTTGAACATCGAGGGCGAACTGCGGCACA21.3888888888888888No Hit
CCGCCCTCGAGGAGCGCGGCTTCATCCGCCGCCTGGCGCACCGGGCGCGC21.3888888888888888No Hit
GATCTGGACCTGGATGTACCAGCAGGACGGGCCGGTGAGCGCCGTGCTGA21.3888888888888888No Hit
GTGGCGACGACCGCCGCGGCGATCCCGGTCGCGATCGACGCGCGTCAGGC21.3888888888888888No Hit
GCGACGGGGTGCTCGTGTGCGTCCACGACCGGCAGATCGGACGCACCTCC21.3888888888888888No Hit
CTCCGACGCCGTGCTGCGCCTGTTCGCCGACGGCAGCACCGTCGTCCTGC21.3888888888888888No Hit
GTATCACAGAAATGTCTGACTTAATCATCCCCATGCAGGAGCTCTGTGAG21.3888888888888888No Hit
GTCGTGTCCGGGCGGAACAGGAACAGCAGCCGCTTTTCGCTCTCGTCCTG21.3888888888888888No Hit
TCAGTGATTTCTCAGCATTGTATTATTCAATTCAAAAAGTCCTTTTCTCC21.3888888888888888No Hit
GAGAGGAGCATCGCCCGACTCAGCCGTCCGCGCGTTCGCGCCGCAGAACC21.3888888888888888No Hit
TCTATACCTCGTCAACTTCAACAAGAATGACTGGATTCGAGTTGGCCTTT10.6944444444444444No Hit
CGTCAAAGAACGGATCGAAGAGGTTAAGAAGACGCTTCCCAAAGGCGTCG10.6944444444444444No Hit
GACGTCGTTCGCCGCCGCGATCCTGATCGACACGTCGGGCAGCATGGAGG10.6944444444444444No Hit
ACTGGCAGGATCAACCAGGTAGCATATGCTTGTCTCAAAGATTAAGCCAT10.6944444444444444No Hit
GTCTTGGTTGCGCGCGGGTCGACGAGGAAGGTGTACTTGCCCTCGTCGAT10.6944444444444444No Hit
CTTCGGATTCGCCGCACGTGATCGAGAACAGCATCCTGATATTGCGGACT10.6944444444444444No Hit
CTTCGGGCTGGACAGGGCCAACTCGGTCACCGACACCGCGCTGGCGGCGA10.6944444444444444No Hit
CGGGCGAGAAGAGTTGGGACTGCCCGTGCCACGGCTCGCGCTTCGACCCG10.6944444444444444No Hit
CCGATGATCCACACGGAGGACGGGCGGATCGTGCCGGTCCCCGCCTCGGA10.6944444444444444No Hit
GGGATAGGCTGGTCGACGACGCGAACGAGAGCCTAACGAGGGACGAACGT10.6944444444444444No Hit
ATGTGATTTCTGCCCAGTGCTCTGAATGTCAAAGTGAAGAAATTCAATGA10.6944444444444444No Hit
GTTTAGCAAAAAACTCGATACCCCAGGTTTGTAGTAGTTGTTGTGCCAAG10.6944444444444444No Hit
TCCTGAAAAATCACCGCCACTTCGCGGCGGCTCCGGGGCTCAAGCCGGAA10.6944444444444444No Hit
CGTTCGAGCGGTGGCGCGAGACCGTGTGCGGCCGATCGGAGCCGTGGACG10.6944444444444444No Hit
CTGCTAAACTCTAAAGATAAAAAGGAATGGCTTTTAGAAACACACTGACA10.6944444444444444No Hit
GCCTTAGGAGAAAGCACATGTACAGCATTGCTAAATGCTGTACATGTGCT10.6944444444444444No Hit
GGTCGGTCGCGTTCGACGCGGTCGAGACGCCGTTCGGCTAGCGCCAGCGT10.6944444444444444No Hit
CGTTCATAGCGACGTCGCTTTTTGATCCTTCGATGTCGGCTCTTCCTATC10.6944444444444444No Hit
CCCGGACCGGCTGGTCAGGAGCCTCACGGCCCCCGCGCCCCGAGCGCGGC10.6944444444444444No Hit
GATTAAGAGGGACGGCCGGGGGCATTCGTACTGCGCCGCTAGAGGTGAAA10.6944444444444444No Hit
ACTTAGCATTTAATTTAGTAGGGAGACAAAAAGCATTAATTTGCATTTTG10.6944444444444444No Hit
CTCTTAATCATGGCCTCAGTTCCGAAAACCAACAAAATAGAACCGCGGTC10.6944444444444444No Hit
GTACATGGGAGGAGAGGAGAGCATAGCACCTGCAGCAAGATGGATGTGGG10.6944444444444444No Hit
CTTCCTTGTGATGTGTGTACTCAAGTAACAGAGTTGAACCTTCCTTTTGA10.6944444444444444No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA10.6944444444444444Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GTCCCCAGCGCCTCGTCGAGATCAAGATCGCCGACCACCGCCATGCGTGG10.6944444444444444No Hit
CTTTTGAGTTCCGACTGCTGGGGTAATTGGATTGATCTCCATCATTTCTA10.6944444444444444No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGT10.6944444444444444No Hit
ATATAGTCACTCCAGGTTTATGGAGGGTTCTTCTACTATTAGGACTTTTC10.6944444444444444No Hit
GCCCTGCTCATGGGTCTCCACATGAGCCAGAAACACACGGAGATGGTTCT10.6944444444444444No Hit
GTCCGGGAGTGGGGGCACGTGCGGATCTTCTCCCCGTGGGAGTACGACGT10.6944444444444444No Hit
GTACTACACCGGCACGATCTTCGAGCTCGCCCACCCGGCGGTGTCGTATT10.6944444444444444No Hit
ATTAAGCCGCAGGCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTA10.6944444444444444No Hit
CCCAAGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATA10.6944444444444444Clontech SMART CDS Primer II A (100% over 26bp)
GGTCAATCGGTCGGCACGGACAAGTATGAGAACAAGCTGCGCTGGCTCGA10.6944444444444444No Hit
CCATAGGGATTGGAACCCTGATCTACGGGCACTGGAGCATAATGAAGTGG10.6944444444444444No Hit
TCGTCGCGTCGATCGCCGCCGGCTCCGACCCGCGCGGCAACGGCAACATC10.6944444444444444No Hit
CCCCTGCAACAAGTCGCCGACGAGCTTTCCAAGCGCGACCCCGGTGACAC10.6944444444444444No Hit
GCCCCCTCGACCTCGCCTGGTTCGAGCGGGTCGAGGGCGTCGCCGGGCAG10.6944444444444444No Hit
GCAGTGCTCTGAGCCCTAGGATTCATCTTTCTTTTCACCGTAGGTGGCCT10.6944444444444444No Hit
CCCCTCTGGCGCACACCTGAGCGAGATTAAGGCCGCTGAAACCAAGGCTG10.6944444444444444No Hit
CTTTCACCGCTACACGACCGGGGGTATACTACGGTCGTGTAGCGGTGAAA10.6944444444444444No Hit
CTGCCTGGCCCAGCTTAGACGTAGGCACTGCGGGCTTGGCCTGGAAGTTG10.6944444444444444No Hit
GGTTATACATCCACACCTCACCGCGCTCGTCAACCTGAGCGAAAGCATCA10.6944444444444444No Hit
GCGGCGCAACCAGGAGATGCAGCAGAAGTTGGTGGAGCTGTCGGCTGAGA10.6944444444444444No Hit
GGGCGACGGCGGCTCCGCCAACGATCCCGGCAACCGTGCGCAGAACAGGG10.6944444444444444No Hit
GTGCCGCTCTACTACATCTAGGACGCCTCCGGTGAGCAGGGTCAGTGGAA10.6944444444444444No Hit
GTGTAGGACAATTCCAGTTGCTCATGTATATGTCATTTTTCTCTGACTGC10.6944444444444444No Hit
CCCTATTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAAT10.6944444444444444No Hit
GGCCTGGGCGAGTTCGACCGCGACTTTCTGGCGCCGGAGGTCTCGGCCTT10.6944444444444444No Hit
GCCCTGACGTTCCTGGCGCTGAGCCTCCTCGAGCTTCGCCGCCAGCGGAT10.6944444444444444No Hit
TCTCCTGATAGAGAGCCACTGGACGCCTAAAATTTACGAACAGAATGGCC10.6944444444444444No Hit
ACCGTGCGCCAGACGGTGTCCGAGCCGCTGGAGGTGCACGGCCTGCGGTC10.6944444444444444No Hit
GCGTCAGATCCGCTCGAGCGTGTAGTCGATCGCGCCCACGAGGGCGCGGA10.6944444444444444No Hit
CACGCGCCCCGCGCGCGCGGGAGGGCGCGTGCCCCGCCGCGCGCCGGGAC10.6944444444444444No Hit
GTGTTAGGCAGTCTAGTCCACAGACAGTAAGAGGTTTCCTTTGGGAAGAC10.6944444444444444No Hit
GGCTGGGGCAAGACCGGCGTCGATCTGCCGGAGCCGAAGACCGATGGATC10.6944444444444444No Hit
CGGACAGCTCGTGCTGCACCGACGCGTGCTCGTCGATCAGCGCGCGGACG10.6944444444444444No Hit
GTCTTCCACAATGGTTGAACTAATTTACACTCCCATCAGCAGTGTAAAAG10.6944444444444444No Hit
ACCCCGAAGCGCGACGCCATGACCGCCGCGACGGCCTTGCCCGCCGGCGT10.6944444444444444No Hit
CTCACCCGGGGGGTGCCCACCAAGCACTGGTTCCAGGTCGCCGTCTACGC10.6944444444444444No Hit
AATTAGCCAGGTGCCTGTAATCCCAGCTACTGAGGAGGCTGAGGCAGGAG10.6944444444444444No Hit
TTTTAATGCTTTGTTGAACTCAGTTTGCTTGTATTTTGTTGAGGATTTTT10.6944444444444444No Hit
CACCGTCCCCACCGGCTCGCGCGTCCGCCTGACCTACTCCCCCGACGGCA10.6944444444444444No Hit
GTTCGGTCTGGGCTCGGCCGCGCCCGAGCCCATGCTGCTCCGGCAACTGC10.6944444444444444No Hit
GCAAAAGACCCTTTGCCCGGGGCGTTTCCTTTCCCGTTGGGGCTTCCACT10.6944444444444444No Hit
GTGTGGCACATCAGCGGGCGAGAGCGCGCGCAAGCCGCGGCGGTTAGCAG10.6944444444444444No Hit
CGCTCGCCGTCGGGGAGCAGCACCCGGCGCGCACGGACGGCGAGACTCAC10.6944444444444444No Hit
AGCGCGACCAGAAAAGCATATTCCATCGCTACGCATTCGTACGATTTAAA10.6944444444444444No Hit
GCGTGCTGCACATCTACCCGGACGTTTACGACAAGGGCACGAACATCGTC10.6944444444444444No Hit
AAAGAAAGCCATTTACTTACTCCTAGGCATACCTGAATGTTCTCTCCTAT10.6944444444444444No Hit
GGTCTGCTTGGCCTTCCCGCTGCATCTTCCCGGTCGGCCGGAGCGGTCGC10.6944444444444444No Hit
ACAGAAACCTCCCGTGGAGCAGAAGGGCAAAAGCTCGCTTGATCTTGATT10.6944444444444444No Hit
TTGACAGCTGTTGGTCCCTAATAATATGTCAGGCCCCAAATTCCACTTCA10.6944444444444444No Hit
GCCTTAGGAGAAAGCACATGTACAGCATTGCTCAATGCTGTACATGTGCT10.6944444444444444No Hit
GTGGTCGCGCCCGAGGTTGGTGAAGGCCGCCACGTCGAACCGCACGCCGT10.6944444444444444No Hit
GTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCAC10.6944444444444444Clontech Universal Primer Mix Long (96% over 26bp)
TCCGAAATCCTCTCTCAACCGCCTCGTGCTCGATCTCTACGCGCCGCTGC10.6944444444444444No Hit
CCTCGCGCGGGGCGGGCGTTTGGCTCTGGGCAGGCGCTGCGGTCGCAAGC10.6944444444444444No Hit
CATCTGTAAGCATCTATTTATGTACAAATGTCAGTTTCCCTATTCAAAAC10.6944444444444444No Hit
TGCTAGGGCTGCCTGATTTCAAATTCACACATTTTACTTCTACACGATAT10.6944444444444444No Hit
CCCTTGAACACCCAGACCTTCACGCCGATGATGCCGTAGGTCGTCTTGGC10.6944444444444444No Hit
GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT10.6944444444444444Clontech SMARTer II A Oligonucleotide (100% over 25bp)
TTCTTCTTGTCGGCCAGGATGTCGAAGGCGCCGTAGACGATGTTCTCGGC10.6944444444444444No Hit
TGCCCAGGCTCAACCCCGGCGCGTGCGCCAGCGGACCCGGCCGGTCGGCC10.6944444444444444No Hit
GTTCGCCGGCCGCACCGACCAGTTCGATCGGCCCGAGCATGAGCAGGGTG10.6944444444444444No Hit
GGACTGGCTCGCGGCCGGCTGAGCAAGCGCAAGAAGGTCGTGAGGTCGGG10.6944444444444444No Hit
GGAAGCCCAGCGCGCGGTGCAGCCCCTCGCTGGCCTCGTTCGGCAGGGCG10.6944444444444444No Hit
CCTTTGTCGGGCCCGCCGCCGGACGGCTGATGCTTCACCCGGTGGTGCTC10.6944444444444444No Hit
CCCCTGGGCAGCGAGCCCCCCGGCGACCCGACGCTCGACCCCGAGTTCTA10.6944444444444444No Hit
GGCCACCCAGCTCCGGGAGACCGCCGGCGGCTGACGCTCAGCGCGCCAGC10.6944444444444444No Hit
TCTATGCGCAAGCCTTCGTTGCGGCAGAAGTCGCCGCCGCGGTAATCCCA10.6944444444444444No Hit
ACACCCTCGACCCGACCGTCAAGGACAAGTCGGCCCGCGTCATCGACATC10.6944444444444444No Hit
GCCATGGCGCGGCCGGAGGTCGCGTTCGAGGTAGAGCATGACGGCCGCCG10.6944444444444444No Hit
GCGCGTCTTCCACCAAAAATTCGGCTATGGCGAGATCGCCGAGATCGAGG10.6944444444444444No Hit
GGTCGGACCGCCCAAGACTGGAGAGGAAGATGAGGTGCGCTTCGGCTTGA10.6944444444444444No Hit
GCACGAATGTTGCCCAGAAGCCAGAAAAGAACAGCAGCAACCAGTAGTGC10.6944444444444444No Hit

[OK]Adapter Content

Adapter graph