FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003628026

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003628026
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences144
Sequences flagged as poor quality0
Sequence length100
%GC60

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCTTCACCAAGCAGGCCGGCGGCCGCTTCGGCATCGGAGTGATGAACCCG32.083333333333333No Hit
CCCGTGGACGGCAGGCCCCATCCGGCGGCGATGGCGGCGCCCGCCAGAAA32.083333333333333No Hit
CCTCTCCCCTATTGCTGGCTCTGCAGGGCTCTGATCAAGCGGATCCAAGC32.083333333333333No Hit
TCTCTCCGCGGCGCCCGAGGTGCACGCCCGCGGCGAGGAGGAGGCCGACA21.3888888888888888No Hit
CCGTGAACCCCGGCGACCTGGACGCCCTGATCCGGTCGGGCCCGCGGCGG21.3888888888888888No Hit
GAGCCGGTGCCCTCGGCGGCCTCCACGCACTCGAGGACGTCGATGCCCGG21.3888888888888888No Hit
CTGCACTCCAGCCTGGGTGACAGAGCAAGACTCCATCTCAGTAAATAAAT21.3888888888888888No Hit
TTCAGTACGAATACAGACCGTGAAAGCGGGGCCTCACGATCCTTCTGACC21.3888888888888888No Hit
TTCCACGGCTGGGTGCGCAGCGGGTCGGGGAGCACCGGCTCGTGGATGGT21.3888888888888888No Hit
CCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAA21.3888888888888888No Hit
GGCAGTGAGGAAAAATGCTCCCTTCCCTGAAGGACAATGAGTCTTTCCAG21.3888888888888888No Hit
GAATAGTAGAGAGACACACATGATGGGAAATGAGGAGGAAACAGAGGTTT21.3888888888888888No Hit
GCGCATTCCGTACGCGATGTTGCGCACACCGAGAAGGGCGGCGGAGGCGA21.3888888888888888No Hit
TCACACCACTGCACTACAGCCTGGGCGACAGAGCGAGACTCCGTCTCAAA21.3888888888888888No Hit
TCCGGCAGGATCTCCAGCACGCCGTCGGCGATGATCTCCACCTCTTCCTC21.3888888888888888No Hit
GTGCCGGGTGGGGTGCTTGGTCTCGATCGCCAGCCGCACGGTCCCCGGGG21.3888888888888888No Hit
TCGTCACACCGCCATCCTGCCCGACCGGTGCGGTGAGCGAACGGCCTCCC21.3888888888888888No Hit
CAGCTATTGATGGAAGTTTGGATTGTTTCCAGTTTTTGTCTATTGTAAAT21.3888888888888888No Hit
TACATCCATCGGCGGAACTTGGACGCTGTTCGCTTTCGGCAATGGCTATC21.3888888888888888No Hit
GCCTCGATCATCGAATCGCCCTCGATTTCGAGAACATAGTGGTCGCCCGA21.3888888888888888No Hit
ATGGAATGCTCTCTGGAGCTATCTTCATGATGTAGCAGCAGGTGCCAGGG21.3888888888888888No Hit
ATCAACAACGGCTTCCTCGCGCTGGAGTGCGCGGGCCTCGTCGAGGCGTT10.6944444444444444No Hit
GGCTCTGGCTGCGCCAGGGCAGGGCGCGCTCCGCTCCGGGCCGTCGGGTC10.6944444444444444No Hit
CTTCAGAGCCAACAGGTCCCCGACCGGCGTGTCGGAGTCGTGCACCAGCA10.6944444444444444No Hit
CCGTTGTCCCGTCCGGGTCCAGGCTGACCAGGAACCCTCCCGGCCGGAGG10.6944444444444444No Hit
GACTTAGAGGCGTTCAGTCATAATCCCACAGATGGTAGCTTCGCCCCATT10.6944444444444444No Hit
TGCGTATCTCGTCCGGCAGGTCGCGGATCACGGAGACGAGACGATCCGCG10.6944444444444444No Hit
GCCCGTACAGCTCCCCGATCAAGGGGGGCACCCAGCGGGTTGTGTGGAAC10.6944444444444444No Hit
AGCCCATCGATCGGCTTCCCGCGGCGAGAAGGCCTGCGTGGCGTCGTTCG10.6944444444444444No Hit
TACAGTTCGGCGCGTCGTACACCTTCTCGCGGCTCATCACAGACGCGGCG10.6944444444444444No Hit
GGAGCTGCGCTCGGCGCTGACCACGCCGGAGGCCCCCGAGCTGCATGCGC10.6944444444444444No Hit
GAGTACTTGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG10.6944444444444444Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GGACGACCACCCCGACCTCACGACCTTCTTGCGCTTGCTCAGCCGGCCGC10.6944444444444444No Hit
CTACAAACCCGCCCACGCCGCCCGGTTTCGTTAGACGCTCTCAACTCTTC10.6944444444444444No Hit
AGGTAGACGGGCGGCACGTCACACCCCCCGCTTTTTCGTTCCCCGCATCG10.6944444444444444No Hit
GTTGTGGCAGGAGTTCCCGGGCCCCTGGGCGCCACCTCTGCCCACTCCCA10.6944444444444444No Hit
GTAACGAACATCACCGCGTAGAGGGCCGTAACGGGGTTGTTGAGCAGACT10.6944444444444444No Hit
CCATTCGCACAGTGCCTTCGCCTCATCGGCGGTGGCGCCTTCTCCGTAGT10.6944444444444444No Hit
GGGTCCGCGCGCGCCGCCGCGAGCGTCAGCGCCGCGGCGGTCGGCTGCTG10.6944444444444444No Hit
ATCAGGAACACCTCCGGGTGATTGTCGGTGATGGCCTTGGCGACGTTTTG10.6944444444444444No Hit
CACACGGAGATGGTTCTGGAGATGAGCATTGGGGCGCCGGAAGCCCAGCA10.6944444444444444No Hit
ACCTAGATTATTTATGAAAACTGCGATAGTCATCATTTAAAGTTATGAAA10.6944444444444444No Hit
GCACGCTGACGTCGAGTGAGGCGATCGCCTCGTCGCAGACCAGGAAGTCC10.6944444444444444No Hit
TTCCATCTGGAAGTTGTGGACTTTTCTAGTGAGAGCCTCAAGACTGGGGA10.6944444444444444No Hit
ATATAAGGCGTATCGGTCTCCGGACAGTGGTGAAACTTCAAGCCCCGACC10.6944444444444444No Hit
ACGCAGAACGACGCGCATCACGCCGCCTCACGAGACGCGCACGCCCCGCG10.6944444444444444No Hit
ACCTAAAACCATTAAAATCCTAGAAGAAAACCTAGGCAATACCATTCAGG10.6944444444444444No Hit
GTCCTAAGGCGAGCTCAGGGAGGACAGAAACCTCCCGTGGAGCAGAAGGG10.6944444444444444No Hit
GGATAGTAGGTAGGGACAGTGGGAATCTCGTTCATCCATTCATGCGCGTC10.6944444444444444No Hit
CGCATGAGCAACCTCTTGGCGGCCTCGCCTTCCATGCGCTTGTAGAAGCG10.6944444444444444No Hit
ATCCGGGGTGTCGTGGACCCGCTCCTGCCCGAGGGCCTCGCGCTCGCCGG10.6944444444444444No Hit
AACGACCGGTTTGCACGATTCTCAGGTGCAATATTGGGAACCGGCAAAAT10.6944444444444444No Hit
GTTACTTTTATTCTTTGGTTACTGTTTAATTGATAATTGAAAATTTGTTT10.6944444444444444No Hit
ACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTG10.6944444444444444Clontech Universal Primer Mix Long (96% over 26bp)
GTAACAGCCGCATCGTAGCCAGAGCCGCGTCGGAACGGCTTGAGCAGGTC10.6944444444444444No Hit
CATATTGACGACGCGTATGCGGTACAAATCTTTGTTCTGGATCGTCCACT10.6944444444444444No Hit
TCCCGGAGACGCCGCGCGTCCCGACCAGCCTGCCGCACGCGAGATCCCGG10.6944444444444444No Hit
CACACACACACACACACACACACACACACACACACACACACACACACACA10.6944444444444444No Hit
ATCCCGTAGACGTCTTGACGAAATCGGCACCACACCGTTCGGCGGCCTGG10.6944444444444444No Hit
ATTCCGGGGGCTCCGGGGCCGCAAGCGAACCCGGGCGACGGACGAACGCG10.6944444444444444No Hit
GCCGGTCGGAGATCTGCCCGGTGCGCAGGAGCCAGGCGTAGACGGCGACC10.6944444444444444No Hit
TGGGAATAACGCCGCCGCATCGCCGGTCGGCATCGTTTATGGTCGGAACT10.6944444444444444No Hit
GCCGCTGCCCGACAGGTGGACGGCGACGGCCGGGGGCACCGAGCTGCACC10.6944444444444444No Hit
TCTCGGCGCCCCCTCGATGCTCTTAGCTGAGTGTCCCGCGGGGCCCGAAG10.6944444444444444No Hit
ATTTAGTAGAGACAAGGTTTCACCATGTCGGCCAGGCTGGTCTCGATCTC10.6944444444444444No Hit
GCCTTGGCGCAGCTGGAGCGATGACCCGTTCATGCGCGACCTTCGAGGGT10.6944444444444444No Hit
GTCGTGGGCCGACGCCCGCACCCGCGAGTCGTCGGGGGTCTTGTACGGCT10.6944444444444444No Hit
AAGGTCGGCAGGCTCGCCACACCGCCCAGCGTGCAGCCGTCGCGCTCCAG10.6944444444444444No Hit
GTAGCATTCTGTACCTGGAAAAAACACATTAGGGAAGCTATGGAAATCAT10.6944444444444444No Hit
ACATACTTCCCCCATTATTCCTAGAACCAGGCGACCTGCGACTCCTTGAC10.6944444444444444No Hit
GTCAAAAAGTGTTTTCAAATTTGGTGAAAATTATAAATCCACAGATCTAA10.6944444444444444No Hit
GGCATGCCGGTCAGGGTCTTCAGCCAGTGGGCCAGCTGGTCCATCAGCTC10.6944444444444444No Hit
ATACACCTATGTCCCGTCGTCACCGCGCCCAGAAGCGCGACGTCCTGCCG10.6944444444444444No Hit
GCCCTGCACCCACAGTCGGGCCACGTCCGGATAGAGCACCGCCTTCACCT10.6944444444444444No Hit
GCGTATAGCTGCCCCGTTTGGCGGTCGAACGAGAAGCGCCAGGGGTTGCG10.6944444444444444No Hit
CCCTACGTGCGGGACACCGCGATCTCGTTCGAGACGGAGCCACCCACCGC10.6944444444444444No Hit
GAGCATGCGCCTTCAGGCCAGCCAGTGGGGTCTGCAGTTCGTGAGCCGCG10.6944444444444444No Hit
AACACGTTCATCTCCTCCGCGCCGAAATCCTTGCCGACGACGCCGACGAC10.6944444444444444No Hit
GCGCGGCGCGAGCTGCTGCGTAGCCGCCAGGGGAACGAGGTATGACCCGA10.6944444444444444No Hit
ATCAACAACGGCTTCCTCGCGCTGGAGTGCGCGGGCATCGTCGAGGCGTT10.6944444444444444No Hit
CCCCACGAACGTGCGGTGCGTGACGGGCGAGGGGGCGGCCGCCTTTCCGG10.6944444444444444No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG10.6944444444444444Clontech Universal Primer Mix Long (96% over 26bp)
TCGCGTGGCCTTCCGCCGCGCCATGAAGCGTTCGATGCAGTCGGCCATGC10.6944444444444444No Hit
AGGTTCTTCCGCACGCTCGCGATCGGCGTGGCGAACGCGGCGGTCTTCGT10.6944444444444444No Hit
ACGTAGCGCACGGCCACCTCCAGGTGGCCCGGCTCGGGCGGGTCGGACAG10.6944444444444444No Hit
ATTGAGGTCGAACACGACAGCCCGTCGTTACGCACATTCTCGATTGAGCG10.6944444444444444No Hit
GGTCAAAATCACCTGGAAGCTCCGCCGCGCCCTCGCGGGCCTGGACCCCC10.6944444444444444No Hit
AGCGTCACGCGCCCCTCCATGCTGCCCGACGTGTCGATCAGGATCGCGGC10.6944444444444444No Hit
AGGACATACAGCACAAAGAAGTTTCTGAGAATGCTTCTGTCTAGATTTTA10.6944444444444444No Hit
GGCCCGCACGGACCCGACAGCGACTACGTGCACGTGCAGGCGAACCCGGC10.6944444444444444No Hit
TCAGAGACCAAGCCTGCCAGGGTCTGAAATCTAGAAATGATGGAGATCAA10.6944444444444444No Hit
CGCCATTTCGCCGGGTCATGCACGTCGCGGTCTTCGGGCGCGACGTTGTA10.6944444444444444No Hit
GACCAGCCGCGCGCGGGCTTTTCCGGGCTCTCGTTTGTAGCGATCGAAGA10.6944444444444444No Hit
CGCCTGCACCATGGGCAGGAAGGAGGCCGTCGCAAGCGCCGGCGCCTCGT10.6944444444444444No Hit
CCATGGTAGGCACGGCGACTACCATCGAAAGTTGATAGGGCAGACGTTCG10.6944444444444444No Hit
TACTAGTACAGAAGCAAAGGAGAAGAAACCATAAATATAAATTATCCATT10.6944444444444444No Hit
TCACAATGATAGGAAGAGCCGACATTGAAGGATCAAAAAGCGACGTGCTA10.6944444444444444No Hit
CGTCGGGGCATTCCGGATAGGCCGAGAAAGTGTTGTGGGAAGAAAGTTAG10.6944444444444444No Hit
CCCGAGATGCAGGCTCAGCACCCTCCGGAGGGGACCCGGCCTTCCTGGGC10.6944444444444444No Hit
GAACTAATACCAATCCTACCCAAACTATTCTGAAAAATAGAGGAGGGAAT10.6944444444444444No Hit
CCACCGTCCCCGGCGACTACGTCCGCCGAGCCGCCGCACACCTCGCCACC10.6944444444444444No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT10.6944444444444444Clontech Universal Primer Mix Long (96% over 26bp)
ACCCGTAGCAATGAACGATCTCTGTGAGCCCGTAGGAGATAAAGGTCGCT10.6944444444444444No Hit
GGCTTTCTTTGCAGTTCTTCCAGTGAATGCACAGGCTCATATTCTTCGAT10.6944444444444444No Hit
GTGCCAGGGGCTGGCTTGTAGGCGATCAGCAGCTGCTGGTAGTCATACAC10.6944444444444444No Hit
ATCTCGTCGCGACCGTCCGCGAACTGGTGACCAACGTGGTCAAGCACGCC10.6944444444444444No Hit
GGTTGGGGCAGCTCCCTCTTTTAGCAGGGATTTCAGTTGCAATATTTAAT10.6944444444444444No Hit
CACCAAGGCCGCGTACGACGCCTTCGTGTCGGCTCGCACGGCCACCACCC10.6944444444444444No Hit
GGCCGAGACCGACCCGCCGGGCGGAGGGTGGATGAGCGTGGACGAACCGG10.6944444444444444No Hit
CTCCTGGCAATACCGATGACCGTAAACCGCTTGCACAACTCCTCAAAGTC10.6944444444444444No Hit
GCAATAAGGTTAACTTGTGTGAAAGTTACAGCCGGATTCTTTGGCTGTAA10.6944444444444444No Hit
GCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCG10.6944444444444444No Hit
ATTATGACGAGGATCGCGCCCTCGATCAGGTTCTTCTCGACGGTGCCGAT10.6944444444444444No Hit
GTCACGAACATCACCGCGTAGAGGGCCGTAACGGGGTTGTTGAGCAGACT10.6944444444444444No Hit
AGTCTAATCCGTTATTCGCGCATCCGCGGCTCATCGCGGCGCGGATTCGC10.6944444444444444No Hit
GGGGCTTTGCCGATGCGCTGGTTGCGGGACTTGTGCCGCGCTATTCGGAA10.6944444444444444No Hit
ATCCTGCGTCGAAGGAGGTTTGTCATGCCCAGGGAGCAGGGGGTCAAGGT10.6944444444444444No Hit
AAACAATGTCATTCAAGTCAAAGAGTGTGTCTTGTTTTCTAAATCCCAAA10.6944444444444444No Hit
GTCACACTGGGAGCTGCAGACTGGAGCTGTTCCTATTCGGCCATCTTCTG10.6944444444444444No Hit
CTGTAGGCTCATTCATTTCTCTAACAGCAGTAATATTAATAATTTTCATG10.6944444444444444No Hit

[OK]Adapter Content

Adapter graph