FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003628109

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003628109
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2819
Sequences flagged as poor quality0
Sequence length100
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CTACTACATCTAGGACGCCTCCGGTGAGCAGGGTCAGTGGAAGCCCCAAC120.4256828662646328No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG90.31926214969847466No Hit
GCTTTATTCTGTTGTGGCAGGAGTTCCCGGGCCCCTGGGCGCCACCTCTG80.2837885775097552No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT80.2837885775097552No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT80.2837885775097552No Hit
CCTCAAGACTGGGGATGCTCTCTGGAGCTATCTTCATGATGTAGCAGCAG70.24831500532103584No Hit
CCTCTGCCCACTCCCATCCTCTCCCCAAGCTCCCATTTCTCCAGGGCTTG70.24831500532103584No Hit
GTGTGGCGAGGTGCCGCTCTACTACATCTAGGACGCCTCCGGTGAGCAGG70.24831500532103584No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA70.24831500532103584Clontech SMARTer II A Oligonucleotide (100% over 25bp)
AGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGA60.2128414331323164No Hit
TCTAGGACGCCTCCGGTGAGCAGGGTCAGTGGAAGCCCCAACGGGAAAGG50.17736786094359702No Hit
TAACCAGACAAATCGCTCCACCAACTAAGAACGGCCATGCACCACCACCC50.17736786094359702No Hit
CTAGATAACCTCGGGCCGATCGCACGCCCCCCGTGGCGGCGACGACCCAT50.17736786094359702No Hit
CGTCTAAGCTGGGCCAGGCAGAGGGGCGAGATGCAGGCTCAGCACCCTCC50.17736786094359702No Hit
CTTCTTGCCCGTCTGCAAAAGCTGCAAAAGACCCTTTGCCCGGGGCGTTT50.17736786094359702No Hit
CTCCAGGGCTTGTCCCTGCGGTGTGGGCAGAAGCAGCTTCTTGCCCGTCT50.17736786094359702No Hit
ATGTAGTAGAGCGGCACCTCGCCACACAGGGTGCTCACGGCCATGCCCAG50.17736786094359702No Hit
GCAAAAGACCCTTTGCCCGGGGCGTTTCCTTTCCCGTTGGGGCTTCCACT50.17736786094359702No Hit
GGCTTGGGCTTCCGGCGCCCCAATGCTCATCTCCAGAACCATCTCCGTGT50.17736786094359702No Hit
GTCATACACCACGAGGCCAGTGGAGCCGATGGAGAAGGTGGCAGTGGTAA50.17736786094359702No Hit
ATTCTGTTGTGGCAGGAGTTCCCGGGCCCCTGGGCGCCACCTCTGCCCAC50.17736786094359702No Hit
CCCTGAGTGAGCACCTGGTTACCACTGCCACCTTCTCCATCGGCTCCACT40.1418942887548776No Hit
GAGATGGTTCTGGAGATGAGCATTGGGGCGCCGGAAGCCCAGCAACGCCT40.1418942887548776No Hit
GCTTCTTGCCCGTCTGCAAAAGCTGCAAAAGACCCTTTGCCCGGGGCGTT40.1418942887548776No Hit
CTCCAGAAGAGGAGAAGAGGAAACACAAGAAGAAACGCCTGGTGCAGAGC40.1418942887548776No Hit
ACCTAGAGGAGAAGGATAAATTCCTGGAAATATACAACTCTCCTAGTTTA40.1418942887548776No Hit
GTCCCACACAGGCAGCTGTCTCAGGCTTTACAAGTGATGAGAGACTCATC40.1418942887548776No Hit
GTTACTTTATTGGTTGGGAAAGGGAGAAGCTGTGGTCAGCCCAAGAGGGA40.1418942887548776No Hit
GCATAGCACCTGCAGCAAGATGGATGTGGGCAGCAAAGAGGTCCTGATGG40.1418942887548776No Hit
CTTCCTGACAGGTGTGTGCGCCATCATTGGGGGCATGTTCACAGTGGCTG40.1418942887548776No Hit
GCACAAAGAGTGCTCCCTACGATGAGAACTGGTTCTACACGCGAGCTGCT40.1418942887548776No Hit
ATCTTCATGATGTAGCAGCAGGTGCCAGGGGCTGGCTTGTAGGCGATCAG40.1418942887548776No Hit
ATGCATGTCTAAGTACGCACGGCCGGTACAGTGAAACTGCGAATGGCTCA40.1418942887548776No Hit
CTCCCATCCTCTCCCCAAGCTCCCATTTCTCCAGGGCTTGTCCCTGCGGT40.1418942887548776No Hit
GTCCCTGCGGTGTGGGCAGAAGCAGCTTCTTGCCCGTCTGCAAAAGCTGC40.1418942887548776No Hit
CCACACAGGGTGCTCACGGCCATGCCCAGGAAGGCCGGGTCCCCTCCGGA40.1418942887548776No Hit
CCCATTTCTCCAGGGCTTGTCCCTGCGGTGTGGGCAGAAGCAGCTTCTTG40.1418942887548776No Hit
AGCTAATACATGCCGACGGGCGCTGACCCCCTTCGCGGGGGGGATGCGTG40.1418942887548776No Hit
GGGTCAGTGGAAGCCCCAACGGGAAAGGAAACGCCCCGGGCAAAGGGTCT40.1418942887548776No Hit
CGGCTCCACTGGCCTCGTGGTGTATGACTACCAGCAGCTGCTGATCGCCT40.1418942887548776No Hit
ATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT40.1418942887548776No Hit
CTCTGGAGCTATCTTCATGATGTAGCAGCAGGTGCCAGGGGCTGGCTTGT40.1418942887548776No Hit
GTGCTCACGGCCATGCCCAGGAAGGCCGGGTCCCCTCCGGAGGGTGCTGA40.1418942887548776No Hit
CGCCACCTCTGCCCACTCCCATCCTCTCCCCAAGCTCCCATTTCTCCAGG40.1418942887548776No Hit
GGCCTGCAGAGAGCATTCCATCTGGAAGTTGTGGACTTTTCTAGTGAGAG40.1418942887548776No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG40.1418942887548776Clontech Universal Primer Mix Long (96% over 26bp)
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA40.1418942887548776No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG30.1064207165661582Clontech SMARTer II A Oligonucleotide (100% over 25bp)
ACCCAACACGGGAAACCTCACCCGGCCCGGACACGGACAGGATTGACAGA30.1064207165661582No Hit
CTCCAGAACCATCTCCGTGTGTTTCTGGCTCATGTGGAGACCCATGAGCA30.1064207165661582No Hit
ATCATGCAGCAGAAGCAGAAAAAGGCAAACGAGAAGAAGGAGGAACCCAA30.1064207165661582No Hit
GCAGAGAGCATTCCATCTGGAAGTTGTGGACTTTTCTAGTGAGAGCCTCA30.1064207165661582No Hit
GTATCAACGCAGAGTACATGGGCGCGACCTCAGATCAGACGTGGCGACCC30.1064207165661582No Hit
CGCCGATAGCGCTCACGCAAGCATGGTTAACGTCCCTAAAACCCGCCGGA30.1064207165661582No Hit
CCCTGATAGCTTGTTCTCGTTGAGCCTTTCTAACTTCAGGTTTCTGATTC30.1064207165661582No Hit
GCCCAGTGCACCTGAAACGCCTTCTTATCGTGGTGGTGGTGGTGGTCCTC30.1064207165661582No Hit
TTAATTCTCGCAGCTAGCTGCGTTCTTCATCGACACTTCGAACGCACTTG30.1064207165661582No Hit
CTAGAAAAGTCCACAACTTCCAGATGGAATGCTCTCTGCAGGCCAAGCCC30.1064207165661582No Hit
CTGCAGGCCAAGCCCGCAGTGCCTACGTCTAAGCTGGGCCAGGCAGAGGG30.1064207165661582No Hit
CTACCATGGTGACCACGGGTGACGGGGAATCAGGGTTCGATTCCGGAGAG30.1064207165661582No Hit
AGCAGCTTCTTGCCCGTCTGCAAAAGCTGCAAAAGACCCTTTGCCCGGGG30.1064207165661582No Hit
GTGTATGACTACCAGCAGCTGCTGATCGCCTACAAGCCAGCCCCTGGCAC30.1064207165661582No Hit
ATCTAGGACGCCTCCGGGTCAGTGGAAGCCCCAACGGGAAAGGAAACGCC30.1064207165661582No Hit
TTGCATAGAACTGCGTGTGGTGTGTTACATCACATCATTCATATACCTAC30.1064207165661582No Hit
ATTTAAAGGAGCATCTCAGTTACGTGTGGCGGACAAAAAAAAAGGAGCAG30.1064207165661582No Hit
CTGCTACATCATGAAGATAGCTCCAGAGAGCATCCCCAGTCTTGAGGCTC30.1064207165661582No Hit
GGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCA30.1064207165661582No Hit
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTA30.1064207165661582No Hit
GGTATCAACGCAGAGTACATGGGGCCGCCGGGCGGGGGAATATACAAAGT30.1064207165661582No Hit
GTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAA30.1064207165661582No Hit
CCCACAATCACCACGACGATGAGGACCACCACCACCACCACGATAAGAAG30.1064207165661582No Hit
GCCGTAATATTCAGCTCCCTGAGCTGAGCCTTGAGGTCCGAGTTCATCTC30.1064207165661582No Hit
CGCCCGGACATAGCACCATGCCTTGTCGCCTAGGCCCGCTAGCCGCCGCC30.1064207165661582No Hit
GTACATGGGAGGACGCCTCCGGTGAGCAGGGTCAGTGGAAGCCCCAACGG30.1064207165661582No Hit
GCCTGGTGCCACAGCCATGGTTTCCATTTCTAGATGAAAGGATGGCCTAG30.1064207165661582No Hit
ACATCATGAAGATAGCTCCAGAGAGCATCCCCAGTCTTGAGGCTCTCACT30.1064207165661582No Hit
CCTTGGGAAGGAGAGAGATGACTTTTCCTTCCTGAAGATAGACAAAGAAC30.1064207165661582No Hit
CTCTAGATAACCTCGGGCCGATCGCACGCCCCCCGTGGCGGCGACGACCC30.1064207165661582No Hit
GCAGAGACGGCTACAGCCCCACCAGCAGGTACACTGGCAAGCTTGCCAAT30.1064207165661582No Hit
GTATGACTACCAGCAGCTGCTGATCGCCTACAAGCCAGCCCCTGGCACCT30.1064207165661582No Hit
CCAGAGAGCATCCCCAGTCTTGAGGCTCTCACTAGAAAAGTCCACAACTT30.1064207165661582No Hit
TCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTAA30.1064207165661582No Hit
GGACTACTCCGCAGCTCCCCGGGGCCGATTTGGCATTCCCTGCTGCCCAG30.1064207165661582No Hit
GAGCATTGGGGCGCCGGAAGCCCAGGCAGAGGGGCGAGATGCAGGCTCAG30.1064207165661582No Hit
GCCCAGGATGCTATAAAATCACCACGGTCTTTAGCCATGCACAAACGGTA30.1064207165661582No Hit
GGTCAGTGGAAGCCCCAACGGGAAAGGAAACGCCCCGGGCAAAGGGTCTT30.1064207165661582No Hit
GTCCTCATCGTCGTGGTGATTGTGGGAGCCCTGCTCATGGGTCTCCACAT30.1064207165661582No Hit
GCCCGGGTCGCAGGCACCTCCCCGCCAGCTCTCCCGCTTCTCGCACAGCT30.1064207165661582No Hit
CAGATCAGACGTGGCGACCCGCTGAATTTAAGCATATTAGTCAGCGGAGG30.1064207165661582No Hit
CGCACGCCCCCCGTGGCGGCGACGACCCATTCGAACGTCTGCCCTATCAA30.1064207165661582No Hit
GTGCCAGGGGCTGGCTTGTAGGCGATCAGCAGCTGCTGGTAGTCATACAC30.1064207165661582No Hit
TTGGGGCGCCGGAAGCCCAGGCAGAGGGGCGAGATGCAGGCTCAGCACCC30.1064207165661582No Hit
CCAATGCTCATCTCCAGAACCATCTCCGTGTGTTTCTGGCTCATGTGGAG30.1064207165661582No Hit
CTTCCCAGGCTTCCTCCTTGTTGGGTTTGGGGTGTCAACAGGATCCAGGC30.1064207165661582No Hit
ATTTAGAACACCAATTTGTGAGGATAAATTCCATTCGTCAGAGCAAACAC30.1064207165661582No Hit
GAGTACATGGGGAGACCCTGCAGCACCATCTGTCATGGCGGCTGGGCTGT30.1064207165661582No Hit
AGATGGGGTTTTGCCATGTTAGCCAGGCTGGTCTCGAACTCCTGACCTCA30.1064207165661582No Hit
GCGGACCCACGTGCCCCAGGCCTCGCGCTGCCCGGCCGGCTCCTCGTGTC30.1064207165661582No Hit
GCGTTGAAACAGGTAAACTGAAACGAGTTCACCCAAGCCAAGGTATAAAC30.1064207165661582No Hit
CTCCAGGATGCCCCCGGGCTGCGCTGGACGCTAAGACCCCAGCACCTAAT30.1064207165661582No Hit
GGTGTGATCCCAGGGCCCCTGATCAGCAGCGGAGGAGCGCTCGGGCCACC30.1064207165661582No Hit
ATTCATGGGAGTAGAGGTGAGATATCGTTAGGCAAGTCTTCTTGTAAGGA30.1064207165661582No Hit
GTGGGCAGAAGCAGCTTCTTGCCCGTCTGCAAAAGCTGCAAAAGACCCTT30.1064207165661582No Hit
CCCATCCTCTCCCCAAGCTCCCATTTCTCCAGGGCTTGTCCCTGCGGTGT30.1064207165661582No Hit
GTATCAACGCAGAGTACATGGGAGGAGAGGAGAGCATAGCACCTGCAGCA30.1064207165661582No Hit
AACGCAGAGTACATGGGCTCTCCGCCAGACCGCCGCCGCGCCGCCATCAT30.1064207165661582No Hit
CCCTGCTCACCGGAGGCGTCCTAGATGTAGTAGAGCGGCACCTCGCCACA30.1064207165661582No Hit
AGCCTGGGAAGTGCCCAGTGACTTATGGCCAATGTTTGATGCTTAACCCC30.1064207165661582No Hit
GCTCATGGGTCTCCACATGAGCCAGAAACACACGGAGATGGTTCTGGAGA30.1064207165661582No Hit
GTGCTGCCACATCAGGCTAATTTTTTGTAATTTTTTTTTTTAAGAGACAG30.1064207165661582No Hit
TCCCGGGCCCCTGGGCGCCACCTCTGCCCACTCCCATCCTCTCCCCAAGC30.1064207165661582No Hit
GTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTT30.1064207165661582No Hit
GCAGAGGACAGTGGAGCAGCCAACACACAAAACTACCGTTTGTGCATGGC30.1064207165661582No Hit
GTCCTTCTGTCCTCATGTTGGCAGAGATATCTACTCTGAAGCCTTTGTAG30.1064207165661582No Hit
GGGCAGAAGCAGCTTCTTGCCCGTCTGCAAAAGCTGCAAAAGACCCTTTG30.1064207165661582No Hit
CTCCCCAAGCTCCCATTTCTCCAGGGCTTGTCCCTGCGGTGTGGGCAGAA30.1064207165661582No Hit
CGCCACACAGGGTGCTCACGGCCATGCCCAGGAAGGCCGGGTCCCCTCCG30.1064207165661582No Hit
ATCCAAATATTAACAGTAATGGCAGCATTTGTCTTGATATTCTACGATCA30.1064207165661582No Hit
CCTCCGGTGAGCAGGGTCAGTGGAAGCCCCAACGGGAAAGGAAACGCCCC30.1064207165661582No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAA30.1064207165661582No Hit
ACATTACAGCCCACTGACTGGGCAGTCCCCAGGATCTCTTTAATGGTTCC30.1064207165661582No Hit
CTTTAATGCAATGGCACAGAAGCTTCTGGCATCAGCACCTGCAAGCCCTG30.1064207165661582No Hit
CCACTGACCCGGAGGCGTCCTAGATGTAGTAGAGCGGCACCTCGCCACAC30.1064207165661582No Hit
GCCTACGTCTAAGCTGGGCCAGGCAGAGGGGCGAGATGCAGGCTCAGCAC30.1064207165661582No Hit
GCATGGCCGTGAGCACCCTGTGTGGCGAGGTGCCGCTCTACTACATCTAG30.1064207165661582No Hit
CCCCGTGGCGGCGACGACCCATTCGAACGTCTGCCCTATCAACTTTCGAT30.1064207165661582No Hit
TCGCCACACAGGGTGCTCACGGCCATGCCCAGGAAGGCCGGGTCCCCTCC30.1064207165661582No Hit
TCATACACCACGAGGCCAGTGGAGCCGATGGAGAAGGTGGCAGTGGTAAC30.1064207165661582No Hit
TATCAAAACCACCCAGTTAAAAACAAAATCGCGGCCGGGCACAGTGGCTC30.1064207165661582No Hit
GTCGGGAGGGAGAAAACCCAGGAGTCCCCAGGCCATCCACATTGCTCATC30.1064207165661582No Hit
CTCCGGAGGGGACCCGGCCTTCCTGGGCATGGCCGTGAGCACCCTGTGTG30.1064207165661582No Hit
ACCATGGTGACCACGGGTGACGGGGAATCAGGGTTCGATTCCGGAGAGGG30.1064207165661582No Hit
GTACATGGGGAACCTGAAAGGTGCTTAGGAAGTTGAAAGGCCCAGAGGAG30.1064207165661582No Hit
TATCAACGCAGAGTACATGGGGCTCTTTCCCTGCCGCCGCCGAGTCGCGC30.1064207165661582No Hit
GGCTAGAAAAGCCAAGGCCAAAGGCTGGAGGGGAGAGGACAGTCAGCATG30.1064207165661582No Hit
CCCAAAGACTTTGGTTTCCCGGAAGCTGCCCGGCGGGTCATGGGAATAAC30.1064207165661582No Hit
GTGTTGAACAGGGACCAGACGACATGGTCGGGCACGGAGGTCTCGCTGCG30.1064207165661582No Hit
CAGCTACCTGACCCCCGACCTCTGGAAGGAGACTGTATTCACCAAGTCTC30.1064207165661582No Hit
CCTGGTTACCACTGCCACCTTCTCCATCGGCTCCACTGGCCTCGTGGTGT30.1064207165661582No Hit
ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCG30.1064207165661582No Hit
CTTTTTGAGAGCACTGGAATGATTTAGGGGTGGGTACAGTGGGAGAGTGA30.1064207165661582No Hit
GTATCAACGCAGAGTACATGGGGAGGAGAGGAGAGCATAGCACCTGCAGC30.1064207165661582No Hit
GTGCACCTGAAACGCCTTCTTATCGTGGTGGTGGTGGTGGTCCTCATCGT30.1064207165661582No Hit
TCTCTGGAGCTATCTTCATGATGTAGCAGCAGGTGCCAGGGGCTGGCTTG30.1064207165661582No Hit
GAGCATTCCATCTGGAAGTTGTGGACTTTTCTAGTGAGAGCCTCAAGACT30.1064207165661582No Hit
CCTCTAGCATCACCAGTATTAGAGGCACCGCCTGCCCAGTGACACATGTT30.1064207165661582No Hit
ACTCTGTCTTTCAGCAGGCCCCCACCCTCCTGAGTGGCAATAAATAAAAT30.1064207165661582No Hit
CTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAGGC30.1064207165661582No Hit
AGTCCATATCAACAATAGGGTTTACGACCTCGATGTTGGATCAGGACATC30.1064207165661582No Hit
CAATCAGGCTGCTTTATTCTGTTGTGGCAGGAGTTCCCGGGCCCCTGGGC30.1064207165661582No Hit
GTCTTGAGGCTCTCACTAGAAAAGTCCACAACTTCCAGATGGAATGCTCT30.1064207165661582No Hit
AAGCTACAGTATGCATTTATTCTGTAATCTTGACACAAAATTGGAGAAAT30.1064207165661582No Hit

[OK]Adapter Content

Adapter graph