FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003628110

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003628110
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences2819
Sequences flagged as poor quality0
Sequence length100
%GC52

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTTTATTCTGTTGTGGCAGGAGTTCCCGGGCCCCTGGGCGCCACCTCTG160.5675771550195104No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT120.4256828662646328No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT100.35473572188719404No Hit
CCTCTGCCCACTCCCATCCTCTCCCCAAGCTCCCATTTCTCCAGGGCTTG90.31926214969847466No Hit
GTGTATGACTACCAGCAGCTGCTGATCGCCTACAAGCCAGCCCCTGGCAC80.2837885775097552No Hit
TCCCTGCGGTGTGGGCAGAAGCAGCTTCTTGCCCGTCTGCAAAAGCTGCA80.2837885775097552No Hit
CACTAGAAAAGTCCACAACTTCCAGATGGAATGCTCTCTGCAGGCCAAGC70.24831500532103584No Hit
CTCCAGAACCATCTCCGTGTGTTTCTGGCTCATGTGGAGACCCATGAGCA60.2128414331323164No Hit
TTTCTAGTGAGAGCCTCAAGACTGGGGATGCTCTCTGGAGCTATCTTCAT60.2128414331323164No Hit
GAGGAGAGCATAGCACCTGCAGCAAGATGGATGTGGGCAGCAAAGAGGTC60.2128414331323164No Hit
GTCATACACCACGAGGCCAGTGGAGCCGATGGAGAAGGTGGCAGTGGTAA60.2128414331323164No Hit
CTGATGGAGAGCCCGCCGGACTACTCCGCAGCTCCCCGGGGCCGATTTGG60.2128414331323164No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT60.2128414331323164No Hit
GTCCTAGATGTAGTAGAGCGGCACCTCGCCACACAGGGTGCTCACGGCCA50.17736786094359702No Hit
GCTCCAGAGAGCATCCCCAGTCTTGAGGCTCTCACTAGAAAAGTCCACAA50.17736786094359702No Hit
GTGCCTACGTCTAAGCTGGGCCAGGCAGAGGGGCGAGATGCAGGCTCAGC50.17736786094359702No Hit
CTCCAGGGCTTGTCCCTGCGGTGTGGGCAGAAGCAGCTTCTTGCCCGTCT50.17736786094359702No Hit
CCCATCCTCTCCCCAAGCTCCCATTTCTCCAGGGCTTGTCCCTGCGGTGT50.17736786094359702No Hit
GTATGGTTGCAAAGCTGAAACTTAAAGGAATTGACGGAAGGGCACCACCA50.17736786094359702No Hit
TTCCTGGGCATGGCCGTGAGCACCCTGTGTGGCGAGGTGCCGCTCTACTA50.17736786094359702No Hit
CTCAGCACCCTCCGGAGGGGACCCGGCCTTCCTGGGCATGGCCGTGAGCA50.17736786094359702No Hit
GAGCATTCCATCTGGAAGTTGTGGACTTTTCTAGTGAGAGCCTCAAGACT50.17736786094359702No Hit
GTCTCAGGCACAGGAGCAGAGAAGACTGGCGTGTGCCCCGAGCTCCAGGC40.1418942887548776No Hit
GTATCAACGCAGAGTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAA40.1418942887548776No Hit
ACCCTGTGTGGCGAGGTGCCGCTCTACTACATCTAGGACGCCTCCGGTGA40.1418942887548776No Hit
GTTGTGGCAGGAGTTCCCGGGCCCCTGGGCGCCACCTCTGCCCACTCCCA40.1418942887548776No Hit
CTGCTACATCATGAAGATAGCTCCAGAGAGCATCCCCAGTCTTGAGGCTC40.1418942887548776No Hit
CTCTACTACATCTAGGACGCCTCCGGTGAGCAGGGTCAGTGGAAGCCCCA40.1418942887548776No Hit
GTGTGGGCAGAAGCAGCTTCTTGCCCGTCTGCAAAAGCTGCAAAAGACCC40.1418942887548776No Hit
CAATCAATAGATTTATCAACCTGGGGCTGGGGCTGACCGAGGAGGTGGAG40.1418942887548776No Hit
CACACGGAGATGGTTCTGGAGATGAGCATTGGGGCGCCGGAAGCCCAGCA40.1418942887548776No Hit
CCTCCGGAGGGTGCTGAGCCTGCATCTCGCCCCTCTGCCTGGCCCAGCTT40.1418942887548776No Hit
CGTCTAAGCTGGGCCAGGCAGAGGGGCGAGATGCAGGCTCAGCACCCTCC40.1418942887548776No Hit
CTCCCATCCTCTCCCCAAGCTCCCATTTCTCCAGGGCTTGTCCCTGCGGT40.1418942887548776No Hit
CCCCTGGGCGCCACCTCTGCCCACTCCCATCCTCTCCCCAAGCTCCCATT40.1418942887548776No Hit
GATTGTGGGAGCCCTGCTCATGGGTCTCCACATGAGCCAGAAACACACGG40.1418942887548776No Hit
GACCCTGCTCACCGGAGGCGTCCTAGATGTAGTAGAGCGGCACCTCGCCA40.1418942887548776No Hit
GTGCTGAGCCTGCATCTCGCCCCTCTGCCTGGCCCAGCTTAGACGTAGGC40.1418942887548776No Hit
CCCATTTCTCCAGGGCTTGTCCCTGCGGTGTGGGCAGAAGCAGCTTCTTG40.1418942887548776No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA40.1418942887548776Clontech SMARTer II A Oligonucleotide (100% over 25bp)
CTACTACATCTAGGACGCCTCCGGGTCAGTGGAAGCCCCAACGGGAAAGG40.1418942887548776No Hit
TCCCGGGCCCCTGGGCGCCACCTCTGCCCACTCCCATCCTCTCCCCAAGC40.1418942887548776No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG40.1418942887548776No Hit
GACCAAAGGAACCATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTA40.1418942887548776No Hit
CCACTTGTCCCTCTAAGAAGTTGGGGGACGCCGACCGCTCGGGGGTCGCG40.1418942887548776No Hit
GGTTACCACTGCCACCTTCTCCATCGGCTCCACTGGCCTCGTGGTGTATG40.1418942887548776No Hit
TTATTCTGTTGTGGCAGGAGTTCCCGGGCCCCTGGGCGCCACCTCTGCCC40.1418942887548776No Hit
GCCTACGTCTAAGCTGGGCCAGGCAGAGGGGCGAGATGCAGGCTCAGCAC40.1418942887548776No Hit
TCGCCACACAGGGTGCTCACGGCCATGCCCAGGAAGGCCGGGTCCCCTCC40.1418942887548776No Hit
GTCCCTGAGGTGTCAGTTTGCGGCCGCCATCTTGGTCCTTTTCCACCATT40.1418942887548776No Hit
GATTTAGGGAGGATTTCCTCTTTCTCTATTCCACAGAATAGTGACATTAG40.1418942887548776No Hit
GTCCCTTTTTGTGCTTCCTTCTGTAGAGGACAGTCCAGTTTATCTGCCGA40.1418942887548776No Hit
AGCGGCACCTCGCCACACAGGGTGCTCACGGCCATGCCCAGGAAGGCCGG40.1418942887548776No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTG40.1418942887548776No Hit
GTTCTGGAGATGAGCATTGGGGCGCCGGAAGCCCAGCAACGCCTGGCCCT30.1064207165661582No Hit
CCTCAAGACTGGGGATGCTCTCTGGAGCTATCTTCATGATGTAGCAGCAG30.1064207165661582No Hit
GTCAGTGGAAGCCCCAACGGGAAAGGAAACGCCCCGGGCAAAGGGTCTTT30.1064207165661582No Hit
CCTCCGGAGGGGACCCGGCCTTCCTGGGCATGGCCGTGAGCACCCTGTGT30.1064207165661582No Hit
TAGTCATACACCACGAGGCCAGTGGAGCCGATGGAGAAGGTGGCAGTGGT30.1064207165661582No Hit
GGGGAATCCGACTGTTTAATTAAAACAAAGCATCGCGAAGGCCCGCGGCG30.1064207165661582No Hit
CGTGAGCACCCTGTGTGGCGAGGTGCCGCTCTACTACATCTAGGACGCCT30.1064207165661582No Hit
CTGCGGGCTTGGCCTGCAGAGAGCATTCCATCTGGAAGTTGTGGACTTTT30.1064207165661582No Hit
CCTGGGCGCCACCTCTGCCCACTCCCATCCTCTCCCCAAGCTCCCATTTC30.1064207165661582No Hit
CCCTGATTCCCCGTCACCCGTGGTCACCATGGTAGGCACGGCGACTACCA30.1064207165661582No Hit
GTGTGGCGAGGTGCCGCTCTACTACATCTAGGACGCCTCCGGGTCAGTGG30.1064207165661582No Hit
AGCAGAGGCTGGGCGTGGTGGCTCTCGCCTGTAATCCCAGCACTTTGGGA30.1064207165661582No Hit
GCCCACTCCCATCCTCTCCCCAAGCTCCCATTTCTCCAGGGCTTGTCCCT30.1064207165661582No Hit
GTCTCTGGGTGGAGAGCTGACCCAGGAAGGGCTGCAGCTGAGCTGGGGGT30.1064207165661582No Hit
CTCCGGGTCAGTGGAAGCCCCAACGGGAAAGGAAACGCCCCGGGCAAAGG30.1064207165661582No Hit
GGATTGAACCATGCACACTTGCAAGCAAGATGAAGGGCAAACAGATGACA30.1064207165661582No Hit
GTATCAACGCAGAGTACATGGGTGATGTGTAGGAGGAAGAGCTCAGGTGG30.1064207165661582No Hit
CTAGATAACCTCGGGCCGATCGCACGCCCCCCGTGGCGGCGACGACCCAT30.1064207165661582No Hit
GACCGAGGCCAGGCTTCTAGGAGATGGCTCCAGGAAGGCGGCCAAGAATG30.1064207165661582No Hit
CCTTTGCCCGGGGCGTTTCCTTTCCCGTTGGGGCTTCCACTGACCCTGCT30.1064207165661582No Hit
ACTCAGGGCCAGGCGTTGCTGGGCTTCCGGCGCCCCAATGCTCATCTCCA30.1064207165661582No Hit
GGCTTCCACTGACCCTGTGAAGCAAAGGAATGTTGAGGATGGACAGAGAG30.1064207165661582No Hit
GTGTTGGGCCTCTTGGTGGTGAAGCGTGGCTTGTGCTGACGGCGCAGGAC30.1064207165661582No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT30.1064207165661582Clontech Universal Primer Mix Long (96% over 26bp)
AGAGAAAGCAGCCGACCAGTGTCCGTCCATCTGTCATGCGAATGCGCATA30.1064207165661582No Hit
TGATGTAGCAGCAGGTGCCAGGGGCTGGCTTGTAGGCGATCAGCAGCTGC30.1064207165661582No Hit
GACCAAGGCAGTGGCCACGTACCATGCCAACACGGAGCGGGAGCAGAAGA30.1064207165661582No Hit
ATCATCCTCTGAGTAGGGCTGCCAGAAGGCCCCCAGCTCCTACCCACTCC30.1064207165661582No Hit
GCTGGTAGTCATACACCACGAGGCCAGTGGAGCCGATGGAGAAGGTGGCA30.1064207165661582No Hit
GCTACATCATGAAGATAGCTCCAGAGAGCATCCCCAGTCTTGAGGCTCTC30.1064207165661582No Hit
GGTCTTCCGTACGCCACATGTCCCGCGCCCCGCCGCGGGGCGGGGATTCG30.1064207165661582No Hit
ATTTGGCATTCCCTGCTGCCCAGTGCACCTGAAACGCCTTCTTATCGTGG30.1064207165661582No Hit
GGGATCACACAACAGAGAACAGATGGACAAGAGTACTTTTGAAATAGTTA30.1064207165661582No Hit
ACCTCTGCCCACTCCCATCCTCTCCCCAAGCTCCCATTTCTCCAGGGCTT30.1064207165661582No Hit
GGGGCGGGTTGGGGGGCCCCCGCGTAAGTGCCGGGCGGCCGGGAGCAGAA30.1064207165661582No Hit
GATCATCAAAGCCCTCAAGGAACCACCAAGAGACAGAAAGAAACAGAAAA30.1064207165661582No Hit
ATCTTCCACAAGTACTCCGGCAGGGAGGGTGACAAGCACACCCTGAGCAA30.1064207165661582No Hit
TTATAAGTATTATTAGAATACAAACATCTCTTTTCTCTTAGTGACACATG30.1064207165661582No Hit
ACTACCAGCAGCTGCTGATCGCCTACAAGCCAGCCCCTGGCACCTGCTGC30.1064207165661582No Hit
CTTGACATACATAGGCTCATCACAGTTGGATGCAAGCACACAAAGATGGG30.1064207165661582No Hit
GGGCAGCAGGGAATGCCAAATCGGCCCCGGGGAGCTGCGGAGTAGTCCGG30.1064207165661582No Hit
GGTATCAACGCAGAGTACATGGGCTGTCGCAAGAGGTGGAGTCCGTTTCT30.1064207165661582No Hit
GCCGCGGGGCGGGGATTCGGCGCTGGGCTCTTCCCTGTTCACTCGCCGTT30.1064207165661582No Hit
TATCAACGCAGAGTACATGGGGATGGTAGTCGCCGTGCCTACCATGGTGA30.1064207165661582No Hit
CTTTAATATACGCTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGA30.1064207165661582No Hit
GTCCCTGCGGTGTGGGCAGAAGCAGCTTCTTGCCCGTCTGCAAAAGCTGC30.1064207165661582No Hit
GCCAAGAAGCACAACAAAAAGGGCCTAAAGAAGATGCAGGCCAACAATGC30.1064207165661582No Hit
ATGTAGTAGAGCGGCACCTCGCCACACAGGGTGCTCACGGCCATGCCCAG30.1064207165661582No Hit
GCTCATGGGTCTCCACATGAGCCAGAAACACACGGAGATGGTTCTGGAGA30.1064207165661582No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGG30.1064207165661582No Hit
TAACAATGCAGCAAGGCCCTGCTGCCCAATCTCCATCTGTCAACAGGGGC30.1064207165661582No Hit
GTACATGGGAGGAGAGGAGAGCATAGCACCTGCAGCAAGATGGATGTGGG30.1064207165661582No Hit
TATCAACGCAGAGTACATGGGGCAGTGGTATCAACGCAAAAAAAAAAAAA30.1064207165661582No Hit
GTATCAACGCAGAGTACATGGGCTCAGCCTGACTGGAGCTGACCACCGCT30.1064207165661582No Hit
GGGTATTGGCAAGCTTGCCAGTGTACCTGCTGGTGGGGCTGTAGCCGTCT30.1064207165661582No Hit
GAGATAAGGCAGTCTTGACTGCCATTGCCAAAATTTCTCCAATTTTGTGT30.1064207165661582No Hit
CCAGGGGGAGAGAGGCTACCTGAGGGGAAGGAAGCACAAAAGGGACCCGC30.1064207165661582No Hit
CCTCCGGTGAGCAGGGTCAGTGGAAGCCCCAACGGGAAAGGAAACGCCCC30.1064207165661582No Hit
CCTGCAGCAAGATGGATGTGGGCAGCAAAGAGGTCCTGATGGAGAGCCCG30.1064207165661582No Hit
CCATTTCAGGGAGCTTGTCGACGCTGTCGCAGGGGTGGATCCTGAGCTGC30.1064207165661582No Hit
CCTCCTTATCATTGGGCAGAGAGCAGAAGGTGGCACAGCCCGCGCTGCAG30.1064207165661582No Hit
ATTTGAAGTAGATAGAAACCGACCTGGATTACTCCGGTCTGAACTCAGAT30.1064207165661582No Hit
CTGCTGCCCAGTGCACCTGAAACGCCTTCTTATCGTGGTGGTGGTGGTGG30.1064207165661582No Hit
GCCAGGGGCTGGCTTGTAGGCGATCAGCAGCTGCTGGTAGTCATACACCA30.1064207165661582No Hit
ACCCTCCACCATGCAAGATCTCAACACCATGTTGTCTGCAACACATGACT30.1064207165661582No Hit
CCATGAATCACACTGTCCAAACCTTCTTCTCTCCTGTCAACAGTGGCCAG30.1064207165661582No Hit
GTCGTGGTGATTGTGGGAGCCCTGCTCATGGGTCTCCACATGAGCCAGAA30.1064207165661582No Hit
CTCCCAGGAGAAAGCCATGTTCAGTTCGAGCGCCAAGATCGTGAAGCCCA30.1064207165661582No Hit
ACCATAGCCACTCTGCTTCCTGTCATAACGCCGCTTTCCCTGGGCGTACA30.1064207165661582No Hit
TTTGTGCACCAACTGAAGTACACTGGCATTGACGATTATTATTCACAAAG30.1064207165661582No Hit
ATGCAGGCTCAGCACCCTCCGGAGGGGACCCGGCCTTCCTGGGCATGGCC30.1064207165661582No Hit
GGGCCAGGCGTTGCTGGGCTTCCGGCGCCCCAATGCTCATCTCCAGAACC30.1064207165661582No Hit
CCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCTGATTCCCCGTCACCC30.1064207165661582No Hit
GCCAGCCCCTGGCACCTGCTGCTACATCATGAAGATAGCTCCAGAGAGCA30.1064207165661582No Hit
GAGTCTTGCTCTGTCACCCAGGCTGGAGTGCAGTGGCGTGATCTCAGCTC30.1064207165661582No Hit
GCCAAGTGGTCGAACCCGACATCCAAGACCCAGCGAGCAGCCAAGCTCAG30.1064207165661582No Hit
GGTTTGGGCGCAGTGGGGTCCGGGGGACCTTACATTCACACTTTGGATGT30.1064207165661582No Hit
ATTTAAAGGAGCATCTCAGTTACGTGTGGCGGACAAAAAAAAGGAGCAGA30.1064207165661582No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTA30.1064207165661582No Hit
GTAGGTTTATAGACTTAGCAGAAAAAGTAGGGTGTGCCTATGTGATAATG30.1064207165661582No Hit
ACCTCGGGCCGATCGCACGCCCCCCGTGGCGGCGACGACCCATTCGAACG30.1064207165661582No Hit
TCTCCAGGGCTTGTCCCTGCGGTGTGGGCAGAAGCAGCTTCTTGCCCGTC30.1064207165661582No Hit
ATAGTCAAGTTCCCGGGGGCCGTGGACGGCGCAACCTATATCCTGGTGAT30.1064207165661582No Hit
CTCCGGAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAGGC30.1064207165661582No Hit
ACATCTTACTGATGCTTACTTCAAGAAGAAGAAGCTGCGGAAGCCCAGAC30.1064207165661582No Hit
CTTCCAGATGGAATGCTCTCTGCAGGCCAAGCCCGCAGTGCCTACGTCTA30.1064207165661582No Hit
TGTCATAACCATGGGAGTCTGGGTTCTTCTCATACAAGTTTTCGTCCTCG30.1064207165661582No Hit
CGTCTAAGCTGGGCCAGGCAGAGGGACGAGATGCAGGCTCAGCACCCTCC30.1064207165661582No Hit

[OK]Adapter Content

Adapter graph