FastQCFastQC Report
Sat 23 Apr 2022
EGAF00003628116

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003628116
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences65
Sequences flagged as poor quality0
Sequence length100
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per base quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AACAACCCTCAGAGAACTGGCCAACGAGCACAAGAAAATTATGAAGGCAG34.615384615384616No Hit
CTCCATGTACTCTGTGTTGATACCACTGCTTCCCATGTACTCTGCGTTGA34.615384615384616No Hit
TAGCTAGTTTCAACAGATGATTGTAGGGGTAATTATATTAGCAGACAAGT23.076923076923077No Hit
CATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCA23.076923076923077No Hit
GTTCAAGACCAGCTTGGCCAACATGGTGAAACCCCATCTCTACTAAAAAT23.076923076923077No Hit
CGTTCGTCCTCACCCCCTAGATTTTCACACACCCAAAATTGGTACTTGCT11.5384615384615385No Hit
TATAAATACACAGTAAATGCTTCCTCCTTATATTTTTATTGATTGATTGA11.5384615384615385No Hit
GTCGGGAACCCGCTCTGCTTCAATGGCTTCTAATTCCTCTGGAATGAACT11.5384615384615385No Hit
GCTTGTCCCCGTCGGGCGCGCTCGCGATCGGCGTATCGGCGCTGCCCGCG11.5384615384615385No Hit
TTATTGCTCAATCTCGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTT11.5384615384615385No Hit
CATCTAATTAGCTTGCCTGTTAAGTTTGTCAACCACTGGCTTGATCCGAC11.5384615384615385No Hit
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC11.5384615384615385No Hit
CCCACGGAATCGAGAAAGAGCTATCAATCTGTCAATCCTGTCCGTGTCCG11.5384615384615385No Hit
AAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTCCCCGGGTCGGGAGT11.5384615384615385No Hit
GGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACG11.5384615384615385No Hit
ATCAATCTGTCAATCCTGTCCGTGTCCGGGCCGGGTGAGGTTTCCCGTGT11.5384615384615385No Hit
CATATGAGAGTGCGCATGTGCACACGTGTTCCCAGGCAGGGGTCAGAAGG11.5384615384615385No Hit
CCCGTGCGCTTCTCCTCGGGCGCGGCGACGTACGCGCCGAAGCCGATCGA11.5384615384615385No Hit
TAACTATATAAGCGCCGTTTTTGAACTGTTCCAGCTTGCCCTTTCCAAGC11.5384615384615385No Hit
CTACCTACCTATTGAGGAAACCCCAAATCATGTGAAAAGAACATCAAAGT11.5384615384615385No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT11.5384615384615385No Hit
AACTCACGAGAGCTGTCACGATTACGTGCACATGAGCAAAAGCGAAAGCT11.5384615384615385No Hit
GGCGTGGTGGCTAACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGCGG11.5384615384615385No Hit
CATGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCAGTGGTATCAAC11.5384615384615385No Hit
ATGCTGTACCAGTGGCACCTACAACTACCTCCGTCTGTTCCGTCACAGGA11.5384615384615385No Hit
GTGATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTC11.5384615384615385No Hit
TCCTGGGTTTGAAAGAACCCAGTTCAGGAGTTTCTGTTTTAGTTTGAGAT11.5384615384615385No Hit
GCCCGAACAAGACTTTGAATTCTTTAGGGAACTTGAGGAGAACCTGACTA11.5384615384615385No Hit
CTGGTGCGACGGCACGGCACTTGTTATCGAAACTGCGTCATCAGGAGCAA11.5384615384615385No Hit
CGTCGCGGTCCAGCGGCGCCGGCGCGGCGGGCAGCCGGGCGTTCAGGCGT11.5384615384615385No Hit
CTCTAAGACAAAACAATAGAATGTATCCAATTGGAAGAACGCAGAGAAAA11.5384615384615385No Hit
CCTTCGCGGGGGGGATGCGTGCATTTATCAGATCAAAACCAACCCGGTCA11.5384615384615385No Hit
GACATGCTGCCTGCCAGTTCTACGAGGCAAAACGGAATCAGCAGAATACT11.5384615384615385No Hit
CATTTATCAGATCAAAACCAACCCGGTCAGCCCCTCTCCGGCCCCGGCCG11.5384615384615385No Hit
ACTCAATGAGCCAATTCGGATTTGGAGTGCTGGGTGCGCTTCTGGTCAAG11.5384615384615385No Hit
ATATTCGACTTTTGCCTTGTCAAATAACTCTGAAACTCCCTCTTACACCA11.5384615384615385No Hit
TACGTGGACGACGTGCTCCGGACCCGTAAGATCTACAGAGACCTCTACGG11.5384615384615385No Hit
GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT11.5384615384615385No Hit
AACCCGATTCCGATTAAAGCAGCATTGAAACTTCAAGGCTGGGATGTTGG11.5384615384615385No Hit
CTTCCTCATCTGCCCTCTGCAGAAGGCTGGTCTCCTATGGTGGTTTCAGG11.5384615384615385No Hit
ATCAAGAACGAAAGTCGGAGGTTCGAAGACGATCAGATACCGTCGTAGTT11.5384615384615385No Hit
TTCCAGGAGCTGGTGCTGCCCCACTTTGGGAAGGAAGATGCTGGGGATGT11.5384615384615385No Hit
TGGGAATAACGCCGCCGCATCGCCGGTCGGCATCGTTTATGGTCGGAACT11.5384615384615385No Hit
TTTATATGCTATCGACTTCTACATTGCTTAAAATAATCTTTTTTGTAGTT11.5384615384615385No Hit
GTAACATCCTCTCCAGTGTAGTCCTTCGGGACTCCCTGATAGACATCTGT11.5384615384615385No Hit
GATGACCAGCGCGACCTTATCTCCAACAATGAGCAACTGCCCATGCTGGG11.5384615384615385No Hit
GGAGCCAGTCGAACATATGCCTTCTTCTCTCCATCAGGCCGAATCAGGGT11.5384615384615385No Hit
GCTTGTAAGTGTATTTTTCTGATTTTTTGGGTGAAAAAATGGGGATTCTT11.5384615384615385No Hit
CCCAAAGACTTTGGTTTCCCGGAAGCTGCCCGGCGGGTCATGGGAATAAC11.5384615384615385No Hit
GCCACAGGCGCCGCGCGTCCTTGGCGTCGCGCGCCGCCGTGACGCGCATC11.5384615384615385No Hit
TCTTTAGGGAGGCTAATAGCTAATTGTTTAAAAGCGATTAACTATTAACC11.5384615384615385No Hit
CTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGC11.5384615384615385No Hit
GTTCGAATGGGTCGTCGCCGCCACGGGGGGCGTGCGATCGGCCCGAGGTT11.5384615384615385No Hit
AAGCGAGCTTTTGCCCTTCTGCTCCACGGGAGGTTTCTGTCCTCCCTGAG11.5384615384615385No Hit
AGACTATTGTGCCTTAGGAAAAGCATTTGCTGTGTTTCGTTAGCATCTGG11.5384615384615385No Hit
TTGCTGGATTGTACGGTAGTTGCAGGTTTAATTCTTTTAAGAAATTGCCA11.5384615384615385No Hit
TCCCGGTCTGGGTCAGCGCCGGGTCGGCAGCCGCGCGGGCGATGCCGAAG11.5384615384615385No Hit
GAGTCCCGGGTGCGGCAGTTCGTCGCCGACGCGAGCCACGAGCTGCGCAC11.5384615384615385No Hit

[OK]Adapter Content

Adapter graph

[FAIL]Kmer Content

Kmer graph

SequenceCountPValueObs/Exp MaxMax Obs/Exp Position
ACAAAGT50.094.094
GCTAGTT50.094.03
TTCAACA50.094.09
AGCTAGT50.094.02
TAGCTAG50.094.01
TTTCAAC50.094.08
GTTTCAA50.094.07
TAGTTTC50.094.05
CTAGTTT50.094.04
AGTTTCA50.094.06