FastQCFastQC Report
Wed 27 Apr 2022
EGAF00003628241

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003628241
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences184
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAAGTTGACTTACTGAAGAATGGAGAGAGAATTGAAAAAGTGGAGCATTC31.6304347826086956No Hit
GGGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTAT31.6304347826086956No Hit
ACTGATGATGTGTTGTTGCCATGGTAATCCTGCTCAGTACGAGAGGAACC31.6304347826086956No Hit
GCACTGCTACCAAGTGTCCAAGAGGAGCAGCAGGCTGGAGGGCTGTGCTG21.0869565217391304No Hit
GTCCCACACCGACCGACTGGCAGAGAGAGAAAGGGACATCTTTCAATGCA21.0869565217391304No Hit
CCCTCCTGCAAATAATAATTAAGAAACATGGACCGGGTGCGGTGGCTCAT21.0869565217391304No Hit
AATCATCGAATGGTCTCGAATGGAATCATCTTCAAATGGAATGGAATGGA21.0869565217391304No Hit
ATCCAAGGAAGGCAGCAGGCGCGCAAATTACCCACTCCCGACCCTGTCTC21.0869565217391304No Hit
TTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTG21.0869565217391304Clontech Universal Primer Mix Long (96% over 26bp)
TAAGTGTTCTCTAAAGACAATGGAGGGACATTAAAGGTTTTTGAATTAAG21.0869565217391304No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA21.0869565217391304Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACTTGGGAAGCAGTGGAT21.0869565217391304Clontech SMART CDS Primer II A (100% over 26bp)
GATCTTGGGAGCGGGCGGGCGGTCCGCCGCGAGGCGAGCCACCGCCCGTC21.0869565217391304No Hit
TCTTATGGTTGTGTGGCTCAGAGACTCTAAGCATGGCTTTCCAAATCTCA21.0869565217391304No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTGCGTTGATACCACTGCTTCCCAT21.0869565217391304Clontech Universal Primer Mix Long (95% over 21bp)
GTTCAGGACGGGTCAAAGGCAAAGGCCTTTGTGATGTGAGCAAAGGCAAC21.0869565217391304No Hit
GAATCAGGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATC21.0869565217391304No Hit
CCATTCGCAGTTTCACTGTACCGGCCGTGCGTACTTAGACATGCATGGCC21.0869565217391304No Hit
CCTGCTGCTACATCATGAAGATAGCTCCAGAGAGCATCCCCAGTCTTGAG21.0869565217391304No Hit
GTCCTGAGACTTGTAACCAAGGCGGCCGAGGACCTGCTTGCGTTGCAGGT21.0869565217391304No Hit
CACTTGTTTCACGAACTGCTGATGCTGATCCTGTCTCTTATACACATCTC21.0869565217391304No Hit
CTATTAGTGGGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGA21.0869565217391304No Hit
ACGGAAGGGACCGCTGTCCAGTCAGCGCAGGCCACAGCATCTCAGCCGAC21.0869565217391304No Hit
TTCTTGATTAATGAAAACATTCTTGGCAAATGCTTTCGCTCTGGTCCGTC21.0869565217391304No Hit
GTGGTATCAACGCAGAGTACATGGGGGGCGGCGCGAGCGAGGGGCAGAGG21.0869565217391304No Hit
CCTCTGCCCACTCCCATCCTCTCCCCAAGCTCCCATTTCTCCAGGGCTTG21.0869565217391304No Hit
TCACGAATGGGGTTCAACGGGTTACCCGCGCCTGCCGGCGTAGGGTAGGC21.0869565217391304No Hit
CGCCGACCGCTCGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTT21.0869565217391304No Hit
GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT21.0869565217391304Clontech SMARTer II A Oligonucleotide (100% over 25bp)
TCACGACGGCGCGCGATCAGTCGACGCTGGGCCGCGCCATCCAGGATCGC21.0869565217391304No Hit
CACATTTGCTGTATCCCTGAGGTTTTGATAAGTTGTGTCACTGCTGTCAT21.0869565217391304No Hit
CCCAAAGACTTTGGTTTCCCGGAAGCTGCCCGGCGGGTCATGGGAATAAC21.0869565217391304No Hit
CTTAAAGCCTCGCGAACTTAAAGAGCTAACAAGCCTGTGTGTGGCTCACG21.0869565217391304No Hit
GGTGTAAAGGTGGTTTGCAGGTGGAGAGGAACTTTCTGTCCTGCCATGCA10.5434782608695652No Hit
CTCCCATGTACTCTGCGTTGATACCACTGCTCCCATGTACTCTGCGTTGA10.5434782608695652Clontech SMART CDS Primer II A (96% over 25bp)
GGGACGGGCGGTGGCTCGCCTCGCGGCGGACCGCCCGCCCGCTCCCAAGA10.5434782608695652No Hit
CAGCAGCCAAGGGGAGGCTGTGGCTGTGGATTCCTTTCTTCCTTGCTGAA10.5434782608695652No Hit
GATTTAAAGTGGACTCATTCCAATTACAGGGCCTCGAAAGAGTCCTGTAT10.5434782608695652No Hit
GTATTGTTATTTTTCGTCACTACCTCCCCGGGTCGGGAGTGGGTAATTTG10.5434782608695652No Hit
GGCAAATATATTTTTCAGGACTTAGTCACCAAAAGAGTACAGAGATCAGA10.5434782608695652No Hit
GGGGAAGGAGATGCAGACAGTGAGAGCTTTCCCTGCAACCAAGAAAAACT10.5434782608695652No Hit
AAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAG10.5434782608695652Clontech SMARTer II A Oligonucleotide (100% over 25bp)
CGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGA10.5434782608695652No Hit
CAGGGAGGGCATCCACTTTACATTTCTTTTCTTTTTTTTTTTTTTTTTTT10.5434782608695652No Hit
GAATAATGGAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAG10.5434782608695652No Hit
TCCCATTCCACAGCACACTCTTACACACTTATTGTCAAATCAGATACCAT10.5434782608695652No Hit
GCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAAT10.5434782608695652No Hit
GTAGCAAAGTCATCCAAAAGGTGATGGGATGAAAGGAGGATCCAGCCAGA10.5434782608695652No Hit
TCTCATCATTTAGCTCCCACTTATAAGTGAGAACATGCAGTATCTGTTCC10.5434782608695652No Hit
TTTCAGGTGGAGGCGGGTGGGGGGTCCCCTCCCGGCCAGGCAGCCCCGAT10.5434782608695652No Hit
AGCTTGGAAATTGCCTTGGCATCCACCCTTGGCTCTATGCCCTCCTTCAC10.5434782608695652No Hit
ATTCAATTCCATTCCATTCCACTCCACTCCATTCCATTCCATTCCATTCC10.5434782608695652No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG10.5434782608695652Clontech Universal Primer Mix Long (96% over 26bp)
TCCCAGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT10.5434782608695652Clontech Universal Primer Mix Long (96% over 26bp)
GTACATGGGAAGCAGTGTATCAACGCAGAGTACATGGGAAGCAGTGGTAT10.5434782608695652No Hit
GAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGCTGTCTCTTATAC10.5434782608695652Clontech SMARTer II A Oligonucleotide (100% over 25bp)
CCTTTACGGTGCTTCACGTGCGCGCGGAACACAGACCCGGCGCCCTTCCT10.5434782608695652No Hit
GCTTGACACTGTCCCAAAAGTAGGTGGTGCAGGCTGAGAACCAGTGGGAA10.5434782608695652No Hit
CCTTGGCTATCATCACCCGATGAGGCAACCAGCCAGAACGCCTGAACGCA10.5434782608695652No Hit
CCCACACTGTGTGCAGGATTTGGGTCAGGATTTCCTGAGGCCATTCTTCC10.5434782608695652No Hit
ACCATACACAACACTAAAGGACGAACCTGATCTCTTATACTAGTATCCTT10.5434782608695652No Hit
GTCTTGAGGCCTCGCTGTGTGAGCGCCGAGCACTCCAGGTATTTTACAGC10.5434782608695652No Hit
GCCAACATGGTGAAACCCCGTCTCTACTAAAAATACAAAAATTAGCCAGG10.5434782608695652No Hit
GTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACA10.5434782608695652No Hit
CTACCCAAGCTCTCCTCTCACTTAAGCATAACCAACTGAACCTGCCCTCT10.5434782608695652No Hit
ATCCAACGCAAAAAAAAAAAAAAAAAAAAAAAAATTACACCTGGCTCTTA10.5434782608695652No Hit
GCGCGATGATGTGGGCGACCACCAGGCCCAGCAGCACCAGCGGCACGGCG10.5434782608695652No Hit
ATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTA10.5434782608695652Clontech Universal Primer Mix Long (96% over 26bp)
GGTGAACAATCCAACGCTTGGTGAATTCTGCTTCACAATGATAGGAAGAG10.5434782608695652No Hit
GCCGACGGCCATCCGTGACCGCTACTTAACGCCTGGCTCATGATGAACGG10.5434782608695652No Hit
CAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTACTATGCGTTTATACCA10.5434782608695652No Hit
AAGAAAATACCGGCCAGGAGCAGTAGCTCACACCTGTAATCCCAGCACTT10.5434782608695652No Hit
AGTCGGAGGTTCGAAGACGATCAGATACCGTCGTAGTTCCGACCATAAAC10.5434782608695652No Hit
GCGCTGACCCCCTTCGCGGGGGGGATGCGTGCATTTATCAGATCAAAACC10.5434782608695652No Hit
GGGATAAGTTATTATCCCTCCGGAGGGATAATTTAAGGTAGCACCATACC10.5434782608695652No Hit
ACCCAGGCTAGAGTGTGGTGGCATGAACACAGCTCACTGCAGCCTCAACC10.5434782608695652No Hit
ATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGG10.5434782608695652No Hit
ACACACGCTCTCTAGGACACACTCTCTCTTTTTTTCCCCGTATAGTGCTT10.5434782608695652No Hit
CAACCAACTGTGGTTGAATTATATGCACCCTGACAGCCGGAATGTACAGT10.5434782608695652No Hit
AGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGACATCT10.5434782608695652No Hit
CTAGATAACCTCGGGCCGATCGCACGCCCCCCGTGGCGGCGACGACCCAT10.5434782608695652No Hit
CTCCTACAGAGAGACTACCAGAAGCAGAGAGGAGCAAACACATTTTCACA10.5434782608695652No Hit
GGCTGCAGGGCACTTGGGAGTCAACGTCAATCGGTTACGGTTGTCATCGA10.5434782608695652No Hit
GAATCAGATACATTTAAAAGACCAATAACAGGCATCAAGATTGAAATGGT10.5434782608695652No Hit
GTGCTCCTCACAAGCAAACAGCTTTCTTTTCTCAAGGGCCTCCTTCAAGT10.5434782608695652No Hit
CTGCAGGGCTCCATAATGACAGTAGGAGAGAAGGTCTTCTCCAGCAATGG10.5434782608695652No Hit
TATCAACGCAGATTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTTTTT10.5434782608695652No Hit
ATTTAGCTTAGCCAATGGCTCACTTTAAGCAATGTTCCTGTCTCTTATAC10.5434782608695652No Hit
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA10.5434782608695652No Hit
CATTTCTACAGCTAGCAGGATAACAGATGAGTTAAGGGGCCTCAGACTAC10.5434782608695652No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCCTGTCTCTTAT10.5434782608695652Clontech Universal Primer Mix Long (95% over 21bp)
GTTCTGTAGTGGGCCAGTTAGAAACCAATCCCATTTTCTTTGAGACTTCC10.5434782608695652No Hit
CCTCTAAGAAATTGGGGGACGCCGACCGCTCGGGGGTCGCGTAACTAGTT10.5434782608695652No Hit
CCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACCTGTCTCTTA10.5434782608695652Clontech Universal Primer Mix Long (96% over 26bp)
ACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATTCCCATGACCCG10.5434782608695652No Hit
GTCTTTGTTCTTGTAGTCAGTCTCAGGATGATTACCTGTCTCTTATACAC10.5434782608695652No Hit
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC10.5434782608695652Clontech SMART CDS Primer II A (96% over 26bp)
GAATGTTTTCATTAATCAAGAACGAAAGTCGGAGGTTCGAAGACGATCAG10.5434782608695652No Hit
CGAATACAGACCGTGAAAGCGGGGCCTCACGATCCTTCTGACCTTTTGGG10.5434782608695652No Hit
ATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGGATCTTGGGAGCGG10.5434782608695652No Hit
AACCAGGTCTCCGCTCACACACATCTCGAGCAAGTGGCTCATGGCTGCTT10.5434782608695652No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTGCGTTTATACCACTGCTTCCCAT10.5434782608695652No Hit
ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC10.5434782608695652Clontech Universal Primer Mix Long (96% over 26bp)
TTCACGGTCTGTATTCGTACTGAAAATCAAGATCAAGCGAGCTTTTGCCC10.5434782608695652No Hit
GAGAGACAAGCTAAAGAATTGATGAGTGGCCTGCCACGCATGAAAACTGT10.5434782608695652No Hit
GTGCCATTGTCCGCGGTGCACGCCGCCATCGCCTTCGAAGAACGTCTCGC10.5434782608695652No Hit
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG10.5434782608695652Clontech Universal Primer Mix Long (96% over 26bp)
CACCTGAAACGCCTTCTTATCGTGGTGGTGGTGGTGGTCCTCATCGTCGT10.5434782608695652No Hit
CGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCA10.5434782608695652No Hit
GTGCCCTTCCGTCAATTCCTTTAAGTTTCAGCTTTGCAACCATACTCCCC10.5434782608695652No Hit
ATAGTACATTAGAGGTACCAGGGACTGGAGCGAGGAAGAAAGGAGAGTAA10.5434782608695652No Hit
GAGGTAATATAGCTCATGTAGCTATTTTTCAAAGGAAAAATACAATTTTG10.5434782608695652No Hit
GCACTCCGCTTACAAACACGCAGATGGCAAGAAGATTGATGGCAGGAGGG10.5434782608695652No Hit
GGAGATGAGATGACATCTCTGTCAGAGTATGTTTCTCGCATGAAGGAGAC10.5434782608695652No Hit
CAAGAGAAGGACCCCATAGTGAAAAGATTTTTGGCGAGAGTAGTATATGT10.5434782608695652No Hit
CCTCTTCAAGGAGAACTACAAACCACTGCTCAAGAAAATAAGAGAGGACA10.5434782608695652No Hit
GTGTGGGAAAATGCTATATTAATAAATCTGTAGTGTTTTGTGTTTATATG10.5434782608695652No Hit
AGCGACACATAAATTGTCGAGTACGGAGGCGCAAGGTGCGAGCAAAGGAT10.5434782608695652No Hit
ATACAATGGAGGAGAACAGTGAGAGTGCTCTACGGAAACGTATTCGAGAG10.5434782608695652No Hit
TCTTCAAAAAGCGCATAAATTTTTTCGCGGATCATCTCCGCCACAAAAAA10.5434782608695652No Hit
CCTCATCGTCGTGGTGATTGTGGGAGCCCTGCTCATGGGTCTCCACATGA10.5434782608695652No Hit
GTTTTAATTAATAGTGCTTCTTTTGAATTGTATGTGTTCAGCTTCCCCAT10.5434782608695652No Hit
CCTTAGGATCCCCCACACCAATGTGAACATGTCCAAAATTCGCAGACACA10.5434782608695652No Hit
GATAACAACCTGCTTGGCAAGTTTGAACTCACAGGCATACCAACTGCACC10.5434782608695652No Hit
CCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAA10.5434782608695652No Hit
CATGAAGATAGCTCCAGAGAGCATCCCCAGTCTTGAGGCTCTCACTAGAA10.5434782608695652No Hit
ACTAAAAATACAAAAGTTAGTTGGGCATGGTGGCACACGCCTGTAGTCTC10.5434782608695652No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT10.5434782608695652Clontech Universal Primer Mix Long (96% over 26bp)
ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGACTGT10.5434782608695652Clontech Universal Primer Mix Long (96% over 26bp)
GGATGGTCTGTGACCAGGGCCAGGGCGGCTGGCAGGGGCGGCCTCCGTTT10.5434782608695652No Hit
GACATTTGGTGTATGTGCTTGGCTGAGGAGCCAATGGGGCGAAGCTACCA10.5434782608695652No Hit
GGCCTGCTTTGAACACTCTAATTTTTTCAAGTAAACGCTTCGGGCCCCGC10.5434782608695652No Hit
GTGCAGTCACTCCTCTCATTTCTAAAATAGGGACGTGGCCAGGCACGGTG10.5434782608695652No Hit
GGGAGGTAGTGACGAAAAATAACAATACAGGACTCTTTCGAGGCCCTGTA10.5434782608695652No Hit
GCTTGGGAATGGTCGGGGCCGACATAGTCCGATTGCTCGGCGGTGATCCA10.5434782608695652No Hit
GGAGGTGAGCTGAGATCACGCCACTGCACTCCAGCCTGGGTGACAGAGTG10.5434782608695652No Hit
ATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAA10.5434782608695652Clontech SMARTer II A Oligonucleotide (100% over 25bp)
ATTCCATTCCGTTCAATTCCATTCCACTCGACCCCACTCCACTCCACTAC10.5434782608695652No Hit
GTAATAAGGCCATTTGAAGAAGCAGGCCCGAATGAAGGAGGTCCCATTCC10.5434782608695652No Hit
CATATGGAATCATCATTGAATTGACTCATATGGAATCATCGCCGAATGGA10.5434782608695652No Hit
GCTTACCCAAGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCG10.5434782608695652Clontech Universal Primer Mix Long (96% over 26bp)
CACGTGGACAGGTGTGCTAGTCCAGGCAGTTCACTTGCAGTTTCCTTGTC10.5434782608695652No Hit
AGTATTGGAAGTTCTGGCCAGGGAAGTCAGGCAAGAGAAAGAAAGAAAGA10.5434782608695652No Hit
ACGCAGAGTACATGGGAAGCAGTGGTATCAACCCAGAGCTTCCCATGTAC10.5434782608695652Clontech SMARTer II A Oligonucleotide (95% over 22bp)
GCCATCGCGCTCCGAGCGTTGGCCATAGCCAGCCGTGGCGGTTCATCGTG10.5434782608695652No Hit
AACATCCGTTTTTGCGGTGTTTTGATTGTTGAAGGAAGTTGCCGATCCGC10.5434782608695652No Hit
CGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAG10.5434782608695652No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTAATAT10.5434782608695652No Hit

[WARN]Adapter Content

Adapter graph