FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003628242

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003628242
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences184
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GTCCTATTCCATTATTCCTAGCTGCGGTATCCAGGCGGCTCGGGCCTGCT52.717391304347826No Hit
CATTATTATAACCCTACATTTTGTGCATAAAGTGTAAGTGTATAAGCATA31.6304347826086956No Hit
AATACAGACCGTGAAAGCGGGGCCTCACGATCCTTCTGACCTTTTGGGTT31.6304347826086956No Hit
GGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACG31.6304347826086956Clontech Universal Primer Mix Long (96% over 26bp)
ATCCCACAGATGGTAGCTTCGCCCCATTGGCTCCTCAGCCAAGCACATAC31.6304347826086956No Hit
ATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGG21.0869565217391304Clontech Universal Primer Mix Long (96% over 26bp)
TCATAAAAGATGCCCCAATAGTAGGGCTGATGTTGTGGTCAAAGTGATCC21.0869565217391304No Hit
ATTCCATTCGATTCCGTTCAATGATTATTCCATTGGAGTCCTTTCGATGA21.0869565217391304No Hit
TTGCTTCACTGCGCCACAGTTCGTGGCCGTTTTCGTCGGTGACGGTCACC21.0869565217391304No Hit
CAGTCCGGGTGGTAGCACCCTTGCCGATGTTCTCCGCCAGCAGGTTGCGC21.0869565217391304No Hit
TTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACC21.0869565217391304No Hit
GAACATATAACTTCCAATTAACATAACAATAACTCAAAGAACAAAAATGA21.0869565217391304No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT21.0869565217391304Clontech Universal Primer Mix Long (96% over 26bp)
GAATATACATTCTATTCAACAGTGCATGGAACTTTCTCCAAGATAGACCA21.0869565217391304No Hit
GCAGTGGCACGATCTCGGCTCACTGCAAACTCCGCCTCCCAGGTTCATGC21.0869565217391304No Hit
GGCCTGCAGAGAGCATTCCATCTGGAAGTTGTGGACTTTTCTAGTGAGAG21.0869565217391304No Hit
TAGTTGGATCTTGGGAGCGGGCGGGCGGTCCGCCGCGAGGCGAGCCACCG21.0869565217391304No Hit
GCAACCTCTGCTCCTGCAACCTCCGCCTCCCAGGTTCAAGCAATTATGCT21.0869565217391304No Hit
GGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATCTGTCTC21.0869565217391304No Hit
CCTACAAGGAGGCTGGAGATCTTCCACAATGCAGGCTGCAGCCTGCTTCT21.0869565217391304No Hit
GTTATCTAGAGTCACCAAAGCCGCCGGCGCCCGCCCCCCGGCCGGGGCCG21.0869565217391304No Hit
CTAGTTACGCGACCCCCGAGCGGTCGGCGTCCCCCAACTTCTTAGAGGGA21.0869565217391304No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATAC21.0869565217391304Clontech Universal Primer Mix Long (96% over 26bp)
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG21.0869565217391304Clontech Universal Primer Mix Long (96% over 26bp)
GCCTACGTCTAAGCTGGGCCAGGCAGAGGGGCGAGATGCAGGCTCAGCAC21.0869565217391304No Hit
TTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGAC21.0869565217391304No Hit
GATCAGCATCAGCAGTTCGTGAAACAAGTGCTGTCTCTTATACACATCTG21.0869565217391304No Hit
TCATGGATTACACCAATAGCTTCCTAATCAGTTTCCCTGCCTCAAGTCTC21.0869565217391304No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT21.0869565217391304Clontech Universal Primer Mix Long (96% over 26bp)
CGCTGGCTCAGGCAAGAGAAGGAGAAGGGGCAACCTACCCAAGGAGTCTG21.0869565217391304No Hit
CACCAGGAGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGAAACCTCA21.0869565217391304No Hit
TCATTGCTATTGATCTCAATGACGCTGTCCTCGAGCGCGCTAAGCGAGTC21.0869565217391304No Hit
GACCCTGTGAAGCAAAGGAATGTTGAGGATGGACAGAGAGAATCAGGGGA21.0869565217391304No Hit
GAATTGGCTATTGAGTAAATCCATAAAGTGGGTCTCCTGTGGTGCTGTAG10.5434782608695652No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTAAACCCATGTACTCTGCGTT10.5434782608695652Clontech SMART CDS Primer II A (96% over 26bp)
GTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGATAACGAACGAG10.5434782608695652No Hit
GGCTACGAAAGGGCGCTTGATAGTAATAGGGTTTATCTCTGGCTACCAAA10.5434782608695652No Hit
ACTGGGGCATCACTGAGCGACGCAGCGCCAGCTGGGGACGAGAGAGCTTT10.5434782608695652No Hit
CAAGAGAAGGAAACTTTTCCGCAGTGACTAGCAGAATGTCTTGTAGATAC10.5434782608695652No Hit
ACGTTCTTTAAGGAAAAGAAGTACGCAAAGGAAGTTGTTGCTGTTTCAGC10.5434782608695652No Hit
CTGTGAGGCAATCTAGAGGGTTAGCGAGCCTCACTTTAGTTTCCGGAGTG10.5434782608695652No Hit
GCCGAAGAGCACATGTCCGACGGGGTGCCTGACCCGAACATCCGGCAGTT10.5434782608695652No Hit
GCTGGCACAAGACCTTCTTACCGCAATTTACGGGTGCATCCGCAACGAAG10.5434782608695652No Hit
CATCATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGC10.5434782608695652No Hit
CTTCAGAACTGCGGTGGGTCGTCTCCCTTCAGCACTCTTTCAGTTAATGC10.5434782608695652No Hit
GGGTTCGATTCCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAGGA10.5434782608695652No Hit
TAGAATGAGTTAGAGAGGGTTCCTTCTTTCATTATCTTGTGGAATAGAGT10.5434782608695652No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG10.5434782608695652Clontech Universal Primer Mix Long (96% over 26bp)
GCTGTACGGTTCGTACCGCAAGCCGCGCGAGCTGGTCTGGATCTTCGGCT10.5434782608695652No Hit
TAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAATCGCTC10.5434782608695652No Hit
GTGTTATAAGAGTGTCATATATAATATAATCAGGTATGATAAAAGCATTT10.5434782608695652No Hit
TCTCCACACACTGCTCTTTTCCCCGACCTGCAGGCTCCCCTCGGTACCAG10.5434782608695652No Hit
GCTCTGGTGCCTGGTGGCGCTAGCTCCTCCCACCTCAGCACCTGCTGCAT10.5434782608695652No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA10.5434782608695652Clontech SMARTer II A Oligonucleotide (100% over 25bp)
CCCCCGGCCGTCCCTCTTAATCATGGCCTCAGTTCCGAAAACCAACCCGG10.5434782608695652No Hit
ACTCTGCGTTGATACCACTGCTTCCCATGTACACTGCGTTGATACCACTG10.5434782608695652Clontech Universal Primer Mix Long (96% over 26bp)
GTACTGGGATCAACAAGCTCACATTTAGCACCGCATTGGCTTCTGCGAAT10.5434782608695652No Hit
CTTCCTTGCTGAATTAGGAAGGCCTACGAATATTAATAGGACTCAAACCT10.5434782608695652No Hit
GTGTAATATCTCGGCCGGGCGCGGTGGCTTACGCCTGTAATCCCAGCACT10.5434782608695652No Hit
GGCTTAATTTGACCCAACACGGGAAACCTCACCCGGCCCGGACACGGACA10.5434782608695652No Hit
ACGCCGCACTCAACAACTATGCAGCCCTGCATTACACCGCTCGGCACATG10.5434782608695652No Hit
TCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTCTGT10.5434782608695652Clontech Universal Primer Mix Long (96% over 26bp)
GAACATTGCTTAAAGTGAGCCATTGGCTAAGCTAAATCTGTCTCTTATAC10.5434782608695652No Hit
ATTATTTTCACTGCAGCATCAGGGCCTAATCCTGGGTTGGCAGAGAACTA10.5434782608695652No Hit
GCTTTTGAATTGGGCTTCTTAGTTTGCTAAATTAAGAATCTGGGGCCCTT10.5434782608695652No Hit
ACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTG10.5434782608695652Clontech Universal Primer Mix Long (96% over 26bp)
ATATGCCTACTTAGAGAGTTAGCTTGCTTCTCTAGTGACCCAAGAAGGAA10.5434782608695652No Hit
GAACCGCGGTCCTATTCCATTATTCCTAGCTGCGGTATCCAGGCGGCTCG10.5434782608695652No Hit
GCTCTCAAAGACACAAATGGTCTGCTGAAAGAACAAAGTAGGAGAATTGA10.5434782608695652No Hit
CCATAGAGATGCTCAGTGATGCCAAACTTCTCCAAATTGCCCTTTTCTTT10.5434782608695652No Hit
GTTTTAGTGGCACTTTTGTGACAAGAATGACCCTCCTAATGCTTTACTAC10.5434782608695652No Hit
CAAAACATAACACAATGGCCTCACAAAGTACTGTGAATATAGGATTGATC10.5434782608695652No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCAAGTACTCTGCGT10.5434782608695652Clontech Universal Primer Mix Long (96% over 26bp)
CTTTTGCAGGAGGCACATTCGGGGCCCAGGATGCTCCCAGGCTGCTCCGA10.5434782608695652No Hit
ATTGAAGATTCTGTGATCTCACTCTCAGGAGACCATTGCATCATTGGCCG10.5434782608695652No Hit
GGCGCTTGGCGCCAGAAGCGAGAGCCCCTCGGGGCTCGCCCCCCCGCCTC10.5434782608695652No Hit
ATAGATAGTTGGGTGGTTGGTGTAAATGAGTGAGGCAGGAGTCCGAGGAG10.5434782608695652No Hit
GCCTTCAAGACTCTCTTCGTGGCGAGAGTGAATTATGACACAACAGAATC10.5434782608695652No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTT10.5434782608695652Clontech SMART CDS Primer II A (100% over 26bp)
TTAATATACGCTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGACT10.5434782608695652No Hit
GCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTTAAGTTTCAGCTTT10.5434782608695652No Hit
CCCCTGTGAGGCCCAATTCCAAGACAGACTCTCGTCCTCACCGAAGCTTA10.5434782608695652No Hit
CCCCATCCCCAGGCCGTGAGCTCGGGCAGTGAGCCACATATTCTCGACGG10.5434782608695652No Hit
GGTAGTCGCCGTGCCTACCATGGTGACCACGGGTGACGGGGAATCAGGGT10.5434782608695652No Hit
GTGGAGTGCAGTGCAATGGATTGGAATGGAAAGGAATGGAGTGAAAGGAA10.5434782608695652No Hit
GTAATCATCCTGAGACTGACTACAAGAACAAAGACCTGTCTCTTATACAC10.5434782608695652No Hit
TTCTAGTTCAACATTCTATGATGTTCTTTGCTGGCTTCAGCAAAGTTATG10.5434782608695652No Hit
AGACAGAGTCTTAACACTGTTGCCCAGGCTGGAGTGCAATGGCGTGATCT10.5434782608695652No Hit
CCACACAGGGTGCTCACGGCCATGCCCAGGAAGGCCGGGTCCCCTCCGGA10.5434782608695652No Hit
CCAGGAGTCACTACAGACTGGAAAGAAACCGCAGATGGCGTCTATAAGGC10.5434782608695652No Hit
GGAGTACAGTGGCACAATCTTGGCTCATTGCAACCTCTGCCTCCTGGGTT10.5434782608695652No Hit
GAATGTTTTCATTAATCAAGAACGAAAGTCGGAGGTTCGAAGACGATCAG10.5434782608695652No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAGCAGTGGTAT10.5434782608695652Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GAGACAATTAGAAGAGCAGAAAAACTGGGAGGGAGGGGAAATGCAGGTAT10.5434782608695652No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGGCTGTCTCTTA10.5434782608695652Clontech SMARTer II A Oligonucleotide (100% over 25bp)
CAAGAGAAGGAAACTTTTCCACAGTGACTAGCAGAATGTCTTGTAGATAC10.5434782608695652No Hit
ACCATACTCCCCCCGGAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCG10.5434782608695652No Hit
TTGCAGTGCTACTCACAATAGCCAAGACATGGAATCACCCTAAATGCCCC10.5434782608695652No Hit
GGCAGGAGTAGGGGAGAGTTGGGCAATAGAATTAATATAAGAAGGTTCTG10.5434782608695652No Hit
CCCCACGAACGTGCGGTGCGTGACGGGCGAGGGGGCGGCCGCCTTTCCGG10.5434782608695652No Hit
GCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAG10.5434782608695652Clontech SMARTer II A Oligonucleotide (100% over 23bp)
GGAATGTAATGGAATGAAGTGGAATGGAATGGAGTGGAGTGGAGTGGAGT10.5434782608695652No Hit
TTCTAGTAGAGATGGGGTTTCACCGTGTTAGCCAGGATGGTCTCTATCTC10.5434782608695652No Hit
CCTTTAAGTTTCAGCTTTGCAACCATACTCCCCCCGGAACCCAAAGACTT10.5434782608695652No Hit
GGCCTCGGCCTGCTGCGCGCCTCGCGGCCGGCGGCCCTCGGTGGCCCAGC10.5434782608695652No Hit
GAAGTTGCTTATCAGCTTAAGGAGGTTTGGGGCTGAGACAATGGGGTTTC10.5434782608695652No Hit
GTCATGGGAATAACGCCGCCGCATCGCCGGTCGGCATCGTTTATGGTCGG10.5434782608695652No Hit
GACCGTGAAAGCGGGGCCTCACGATCCTTCTGACCTTTTGGGTTTTAAGC10.5434782608695652No Hit
AGCCACAGTTCAAGTTTTCAGTAGTCACATGTGACTAGTGGCTATCAAAT10.5434782608695652No Hit
GTCCTGGATCGATTCATCACAGTGCTTAGAAATGTCATTAGCATCCATTG10.5434782608695652No Hit
CTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCTGTCTCTTATAC10.5434782608695652Clontech SMART CDS Primer II A (96% over 26bp)
TTTAATGAGCCATTCGCAGTTTCACTGTACCGGCCGTGCGTACTTAGACA10.5434782608695652No Hit
GAAAACATTCTTGGCAAATGCTTTCGCTCTGGTCCGTCTTGCGCCGGTCC10.5434782608695652No Hit
AAAAAGTACTCTGCGTTGATACCACTGCTTACCCATGTACTCTGCGTTGA10.5434782608695652Clontech Universal Primer Mix Long (96% over 27bp)
ACATAGAAATTCGAAAAATCTTGTTCAGCAATGTTAGCAGCCTGTGAGCC10.5434782608695652No Hit
CCCATCATCCTAGTGGGAACTAAACTTGATCTTAGGGATGATAAAGACAC10.5434782608695652No Hit
GCAGTGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAG10.5434782608695652Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GAGTTTGCACCTCGATCACTGCTCTTCTCCTGGCTTCCCGGATGCAGGGG10.5434782608695652No Hit
GAAGAAATCTGGGGTGGGGAGATAATGTACAGCTCTAAGGCCAATGTAAA10.5434782608695652No Hit
AAATTACTTTGAGCAGTATGGCCAATTTCATGATATTGATTCTTCCTATC10.5434782608695652No Hit
GGATCATGTTACCAATAAGATTTTTCTGTGGCACCTCAAGGTGAAGTTCT10.5434782608695652No Hit
GCCTCACGATCCTTCTGACCTTTTGGGTTTTAAGCAGGAGGTGTCAGAAA10.5434782608695652No Hit
CCCAGGCTGGAGTGCAATGGCGTGATCTCGGCTCACTGCAACCTCCGCCT10.5434782608695652No Hit
GTAAATATATAGAACAGAAAAAGCCATTTTAGCCATTTCTACGAGTACAA10.5434782608695652No Hit
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACTGTCTCTTAT10.5434782608695652Clontech Universal Primer Mix Long (95% over 21bp)
TAGCTGTTCTATGCTAGTTGGAATTGTGGCTGAAACCAAAATGGTCTGAC10.5434782608695652No Hit
CCTTTTAAACTTAGTTTCTTTCTTTTTTTTTTAGACGGAGTCTCGCTCTG10.5434782608695652No Hit
GTCATAAGTGGAGTCCGTAAAGAGGTATCTTTACTATAAAAGCTATTGTG10.5434782608695652No Hit
CCCGCTCCCAAGATCCAACTACGAGCTTTTTAACTGCAGCAACTTTAATA10.5434782608695652No Hit
AGCTGAAACGAGAGTACCTGCTTCAGTACAACGATCCCAACCGCCGAGGG10.5434782608695652No Hit
ACGGGGGGCGTGCGATCGGCCCGAGGTTATCTAGAGTCACCAAAGCCGCC10.5434782608695652No Hit
GTCATATATACCACCTCGAAGCCCCGTTTCCGCACTCGCTCCACAAAAGC10.5434782608695652No Hit
CTGCTGAATCCAGCACCTCTCAGTCTTTGCTATTTTCTCAAGATAGCAAA10.5434782608695652No Hit
TTCCATTCGATGATGATTCCATTCGATTCCATTCGATGATTCCATTTGAT10.5434782608695652No Hit
CCGGAAGATAAGGCCGCTCGCTGACGCCGTGTTTCCTCTTTCGGCCGCGC10.5434782608695652No Hit
CCAGGAGTGGAGCCTGCGGCTTAATTTGACCCAACACGGGAAACCTCACC10.5434782608695652No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTGGGTTGGTTGGTGGGATTT10.5434782608695652No Hit
CCCAAAGACTTTGGTTTCCCGGAAGCTGCCCGGCGGGTCATGGGAATAAC10.5434782608695652No Hit
CTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGC10.5434782608695652Clontech Universal Primer Mix Long (96% over 26bp)
GAGTATGGTTGCAAAGCTGAAACTTAAAGGAATTGACGGAAGGGCACCAC10.5434782608695652No Hit
GGTGTGCTTATTCAGGTTTATGAAGGCGAGCGTGCCATGACAAAGGATAA10.5434782608695652No Hit
GACCAGGTTGCAGGCAATGTCCCAGAACCGGTGGTTGGACCAGCTCCTGT10.5434782608695652No Hit
CTCCCATTGTGCCCTTTCTTCATTCTACCGATACAGGGGCAGCTCCAGCC10.5434782608695652No Hit
GGCCTGCTTTGAACACTCTAATTTTTTCAAAGTAAACGCTTCGGGCCCCG10.5434782608695652No Hit

[WARN]Adapter Content

Adapter graph