FastQCFastQC Report
Wed 27 Apr 2022
EGAF00003628246

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003628246
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences37
Sequences flagged as poor quality0
Sequence length100
%GC45

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTCTGACAGTGACACTGATGGTGCTGAGCTCCCCACTGGCTTTGGCTGG38.108108108108109No Hit
ATATTACCCCTTCATGTCCTAAAGAAGACATTTTCTCTTAGAGATTTTCA25.405405405405405No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT25.405405405405405No Hit
GTACATGGGAGGAGATGTGGATGAAGGAGCAGATTTACTAGGAATGGGTC25.405405405405405No Hit
CCCCGGGTCGGGAGTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGT25.405405405405405No Hit
GACAAAAAGAACAAAACTAAGAAGACCAAAGCAGCAGCAGCAGCAGCAGC25.405405405405405No Hit
ATCTTCATCCCAGGGGTGACTGGAAGACGCAAACTTTTACAAGTGTTTTA25.405405405405405No Hit
GCTTCTGTAAGAATCCTGAATTTAGGATTTTCAACTGTCACTACTCCAAC25.405405405405405No Hit
GTATCCTGCAAAGACCCAGCCCCTGCAGCACCACAACCTCCTGGTCTGCT12.7027027027027026No Hit
GTGGGACCATGGGGGCAGCCAAAGTGACTGGGGAAGTACTGGACATTCTA12.7027027027027026No Hit
GCATCCTAGTCACCGCGTTTAAAATGAACCTGCCGGCTGATCGTTTTTAG12.7027027027027026No Hit
TATTACATTAGCATACAAATAATTTGTACATTTAAAGGGTAGCTCCACTG12.7027027027027026No Hit
GGGCTGTAGCTATGATAAACCGGCAGGAGATTGGTGGACCTCGCTCTTAT12.7027027027027026No Hit
GTTTATCCCAATTCAATGACAACCAGAACTTATTTTTTTTGAGATGGGGT12.7027027027027026No Hit
ATCAACTTTCGATGGTAGTCGCCGTGCCTACCATGGTGACCACGGGTGAC12.7027027027027026No Hit
CATCTGACAAAGGGCTAATAGCCAGAATCTACAATGAACTCAAACAAATT12.7027027027027026No Hit
CCGCCACACGGGCCGCCTCCCACTTGCGCTGGGTGATCTGAGCCGCGGTG12.7027027027027026No Hit
GGCTTAATGGGTCCTGGGGCTCCCCTCTGGCCCTCAGGAAGGCAGGAGCA12.7027027027027026No Hit
GTTATGATGATGGGAAGACATACCACGTAGGAGAACAGTGGCAGAAGGAA12.7027027027027026No Hit
TGACAAAATGTTTCATTCATTATAACAAATTTCCAATAATCCTGTCAATT12.7027027027027026No Hit
TCTCTGACTTGCACAAATTTTTATTCCCATATTATAAATGAGTAAACAAG12.7027027027027026No Hit
ATCATAGGTTTTAAAAAACACACATGCATGTATTACAGAAACAAGTAGCC12.7027027027027026No Hit
ACCCAGATTGGCGCTGTTCCACTGGCTGCTTTGGGGGCTCCTACTCTTGA12.7027027027027026No Hit
CTACCCAGTGGTGTCTATCGAAGATCCCTTTTGACCAGGATGACTGGGGA12.7027027027027026No Hit
ACCTTACACTCCATGTCTCTTCTTTCCTTTATAGCAAAAGTTTATGAAAG12.7027027027027026No Hit
ATACTACATGCTAACACAGATAATATGATACACAACCTCAGGGGGGAAGC12.7027027027027026No Hit
CAATTAAATGCAGAATTAAATCCGCTTCTTTTACTTCCTCAAGCGTTGAG12.7027027027027026No Hit
GGTGGGAGCTGGCGCCATCGCCAAGAAGAAACTTGCAGAGGCCAAGTATA12.7027027027027026No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)