FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003628311

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003628311
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences64
Sequences flagged as poor quality0
Sequence length100
%GC54

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TAACAAATCATATCGCAGACGTAAATCGCTGTCAAACCTTTTGTTCCAAT34.6875No Hit
CGTTTACATCGACCTGATCGGTTGTGCCGGGCACGTCTTCCGTCGTGATG34.6875No Hit
GGACATCCCGGATCAGGCTGGCAATGAGGTCCTTACGGTAGGTCATTTCT23.125No Hit
TGTGAATCCTGAGCATTCGCAAGTTGGCGGTAAAAAGAAAAATCATCCCC23.125No Hit
ATCCCGTCATCCTCCACCATTACCTTTTGGTTACCAAACGCAAGCATCGA23.125No Hit
GTACATTGCGGTGCAAGAGGGTGCGTTCCCTGCGTGACGCCTGAGCAATA23.125No Hit
TTTCCCAAATGGTACTGACAACATGCTTGTGCTTTCGAAAGACCTTTTCC11.5625No Hit
CCGCAAGGCGCTGCCCGCTTGCGGGCAGCGCCTTGCGGTGCAGTTCGCTC11.5625No Hit
TATTTCACCCGCATCCCCGTGCCGGCGTCGGTTGGGTTCTCGCAAGCGGG11.5625No Hit
CTTCAGGAGCATCGATGCGCTTCCCTCAGTTGTCCTTCGCTGCCTCGGCC11.5625No Hit
CCATATTGTTAAAGAACAGCCGAACTTTTACGCTCGTCTTGGCTAGGCCA11.5625No Hit
ATTTTGTTTTCTTATGAAGCTCTTGTGGAATTTAAAATCAGTGCAATGTG11.5625No Hit
ATTTTGTTTTCTTATGAAGCTCTTGGGGAATTTAAAATCAGTGCAATGTG11.5625No Hit
TTTTCATACAGATACCTGTTATACAAATTTGCGTTTCGAACGAGTTTATC11.5625No Hit
GGTGCATGCCCGCCGCCCGCGCCTTCCGTGTGATACGTGTGGATCGTGCG11.5625No Hit
CTCCAAGGCTGAAATGAGGAAAAAATGTTAATGGCAGCCAGAGAGAAAGG11.5625No Hit
CCACTTGATGAAGACATCGCTGTGCAGCCAGATGGTGGCGCCGCCGAACA11.5625No Hit
GGGTTACGCAGACGCGCCGCTCGCACGGCTGGACCACCAAGCGCCCCGAC11.5625No Hit
TCCCAGATCGGGCGCCACTCGTAGTTGGAGACGCGCGTCGGTGCACCGTA11.5625No Hit
ATTGGTGGCCGGCCGTGGCTTTCGGCCTGGCGGTGTGGTCGTCCACGCGC11.5625No Hit
GCTGACCTCGATGGACGGCGCGGACCTGCGCGCCATGGGGATCAACAGCG11.5625No Hit
GCCGCGATGCCACGTCGTCGGTATGGATCGCGACGGATGCACGCGCGGCG11.5625No Hit
GATCACCGCCATCGGCGTGTCGATCGTGCTGCAGACACTCGCGATGATGA11.5625No Hit
CAAATGCCGTATCTTCAAGGCGGTCTTTATAGCGGTGGAACGCATGAAGC11.5625No Hit
ACGCCAAGCCATAGGCCGTCATGTACACCAGCACCGACGACACCGAACCC11.5625No Hit
GTGCTAAACGTACTGGAAGGCATTCAAAACCAAGTGGAAAAGAAAGTCAG11.5625No Hit
CGACAACCCGGCGCACATCAAGCAGGCCGTGCATCAGGCGCGCATCGAGG11.5625No Hit
GGCCGTCACCTCGCGCCTTGAAGGTCGAGATTCTCTGCGCGAAGCCGGCT11.5625No Hit
CTTCAGGAGCAGCGATGCGCTTCCCTCAGTTGTCCTTCGCTGCCTCGGCC11.5625No Hit
CCGTCCGCCACAAGATTCAATAATTTATGATATATTAGGCAGTGGATTAC11.5625No Hit
CTATAATGAAGTGACTAAGAGCATTAGCTTTGAAGTCAGACTGAAGTGTG11.5625No Hit
GGAACGAACGCGGCAGATCGGTGCCCGGGGCGGTGAACGCGGTGCCGTCC11.5625No Hit
CTGGAAGGGCTGGGTGTCTTTTTCTTTTTCTTTTTTTTTTTGAGCTGGAA11.5625No Hit
CCTATGCGCCCCTATGCATCGAGATGGCAGCGCGAGAGGAAGCGCTGCAG11.5625No Hit
CTTCTGCGCGGGCGATGCGGAAATCGGCGAGCGTTTTGAGGCGCTCCGTA11.5625No Hit
CCGTCCACTGGCGCTTGGCGCGTGCGTTCTTCGGCGTGAGATTGACGGTC11.5625No Hit
GTTGCCTGTGCTGGCACGCCTGCGTGCACGCAAGCGTGGCCATGTGGCGG11.5625No Hit
CTTCTTGCCTACCTACTTCGGCCCGCGCCTGATGATGCGCGGCGAGGCCC11.5625No Hit
TCCCAGATCGGGCGCCACTCGTAGTTGGAGACGCTCGTCGGTGCACCGTA11.5625No Hit
CGTCGAGCGCATGCACCATGGCGCCCAGCCGCGCGAGCCCCGGGTTGTCA11.5625No Hit
TTGCCTGACTTCCATTGCTTTTCTAAGGCAAACTAAAAGTTCTTTCTAAT11.5625No Hit
GTCAATTTTACAAGGAATTAACCAACAAAAATTTGCTGTTTTCAGCTTGC11.5625No Hit
GGGATCTGCTGCTCTCTTCAGAGGCAGCAGGCAGGAACGGTTATGTCTGC11.5625No Hit
GGTAAACAAACCGGCTTGAAGACCGAAAGGAGAATCATTCGTTTCCTCTA11.5625No Hit
TCTTTATCCATATTGGCAATATCACCGGTGTAAAGCCATTTGTTCCGTAA11.5625No Hit
AATGAAATGTGTCAGTAAATGATATAGAAAAAACTTGGACGAAATGTACA11.5625No Hit
CAAGTGAAATCTATTTCAGAAATAACGTCTACCTCGGAAAAATGCCGACT11.5625No Hit
TGGCGGAGATCACGGAGTCCATCCGTGAGGATGGGGTAATTCAACCTGTA11.5625No Hit
GGTGCGTCATCACCAGCACCGGGATGAACGCCCGCAGTGCGGCGCCCACG11.5625No Hit
GCAGAGGAACTGTGGTGAAGGGTGAGGCAGCAGTGTGAGAAGCAGAAGGG11.5625No Hit
GCAGCGATGCCACGTCGTCGGTATGGATCGCGACGTATGCACGCGCGGCG11.5625No Hit
GCAGAGGAACTGTGGTGAAGGGTGAGGCAGCAGTGGGAGAAGCAGAAGGG11.5625No Hit
GCTCCGCCATCGTTCATATTGATTGTCGGTTTGCGTCGCACGCGCCCAAC11.5625No Hit
TAATCATGTGGCTCCAACATTTAACAATAAAAACCTTTCGAAACTACAAA11.5625No Hit
CACCAGCAGGCAGCCAAACAGCAGCGCATGCATGACCGTGTGCGTGGTTA11.5625No Hit
GTGCTGCACTTCCGGATGCGTGACCAAGATGCGAAGCACGTCGGGGTTGA11.5625No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)