FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003628349

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003628349
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences108
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CGCTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGACTTGCCCTCC21.8518518518518516No Hit
GTATCCGTTCAAGCCTCCCATGATCAAATTCACAACCAAGATCTACCACC21.8518518518518516No Hit
TCCTGGGACAGGGAGAGGCCCCTGCCATCTCCCTGGCCCCATCTCCCCCA21.8518518518518516No Hit
CCGGAGAGGGAGCCTGAGAAACGGCTACCACATCCAAGGAAGGCAGCAGG21.8518518518518516No Hit
CATCTGAAAATGGTGAGGACAGGCACAAACGCAAAGAAAGAAAGTCATCA21.8518518518518516No Hit
GTTCAACGGGTTACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAGC21.8518518518518516No Hit
CCTGGATACCGCAGCTAGGAATAATGGAATAGGACCGCGGTTCTATTTTG21.8518518518518516No Hit
CTAGTGTTTAGGGCTACTGCTTACCTCCCTTTCTCTTTTTTTTTCTCTTA21.8518518518518516No Hit
GTCTCAAAGATTAAGCCATGCATGTCTAAGTACGCACGGCCGGTACAGTG21.8518518518518516No Hit
GTATCACACACTCGTAGTAAGCACGGTTGCTGCGGACGTCACGCCACGCG21.8518518518518516No Hit
AGGTAGAGAACACTCGTGTAGGCCAAGTTGCAAACTATGATAAACTTACA10.9259259259259258No Hit
CATGAAATCAAAACAAAGCTTTCCACTGTCATTCGCCATAGAAGCAGATA10.9259259259259258No Hit
GAATATAGCAAACGGTCACGGTCAGGGTTGTACATAAAAAATCCAGGTTT10.9259259259259258No Hit
ATGGTATACCCATCATGCGCTGGCACCACCGGACCACGGTCAGCAACGTC10.9259259259259258No Hit
GGAGGAGGATAGTGATTCTGATGGCCATTCCCTCGATACATTCCTGGCTT10.9259259259259258No Hit
ATGAGGAAGGCACGGAGGCTGCAGCCGCCACAGCTGCCATCATGATGATG10.9259259259259258No Hit
CCGCAAGGGCAGCAGCAGCAATGAGCCTTCCTCTGACTCGCTCAGCTCAC10.9259259259259258No Hit
GAAAGTCGGAGGTTCGAAGACGATCAGATACCGTCGTAGTTCCGACCATA10.9259259259259258No Hit
AAAAAGTACTCTGCGTTGATACCACTGTCAAAAAAAAAAAAAAAAAAAAA10.9259259259259258Clontech SMART CDS Primer II A (95% over 23bp)
GACACGGACAGGATTGACAGATTGATAGCTCTTTCTCGATTCCGTGGGTG10.9259259259259258No Hit
GCATTCATTTCTTTACATTTCTGTTTGAGCTCCAGAGGTGTCAGACGGTA10.9259259259259258No Hit
GTCTACCACAGCCTTGTAAGTGCTCCAAACCTTAAAGTACCCACAATTAC10.9259259259259258No Hit
GACGATCACACCAGCCACACTATTCCCTTAAGCCAAAGCCTAATCCAGAG10.9259259259259258No Hit
ACCTAAGACATATCTAAAAATCATTTTAAGTGACCTGATTTCAAAGCCGT10.9259259259259258No Hit
CTGAGCTTACAGCAGAGGAACCTCCAGTCTCAGCACCATGAATCAAACTG10.9259259259259258No Hit
GACCATAAACGATGTCGACCGGCGATGCGGCGGCGTTATTCCCATGACCC10.9259259259259258No Hit
ATGATGGACAGAAGGAATATTTCAGATATCTCTGAAAACCTCAAGCGTTA10.9259259259259258No Hit
CGCTCGTACTCGTGCGCCTCGCTTCGCTTTTCCTCCGCAACCATGTCTGA10.9259259259259258No Hit
GGCGAGGTCGAGCCAGGGGCGGCTGCCCTGGGGGCGAGGCGACGCTGTCT10.9259259259259258No Hit
GTGGCCCGCACCCTGCTGGTCTTTGAAGTGCAGCAGCCCTTCCTCTGCGT10.9259259259259258No Hit
GTTTTCCAAATTGGTTGCAGGGAAAGCCCAGAATGACCAGACCGAATGGT10.9259259259259258No Hit
ACCACAAGCAGCACCCACCCCCTTCTCCCCCACCAGGGCTGTAGTGTGAG10.9259259259259258No Hit
GGTATGATGCAACCAATTCGAAGATCCAGACGGGAAACATCTATTGGCTT10.9259259259259258No Hit
AAATAGGAGACTTCGTGGGGTTGGGCAAGGGTTGTTTCACATCAGGACAT10.9259259259259258No Hit
AACGAGAACAAAGACACCACATACCAGAATCTCTGGGATGCATTCAAAGC10.9259259259259258No Hit
TTTCCCGGCCATCCAGAATCTTGCTGCTGCGCAACACAGGAATGGAGACG10.9259259259259258No Hit
GTACGGTGAATGCCGCTCTTCACAGCCTCCTGGTAGGCCTGGACATGTCC10.9259259259259258No Hit
ACATTGGGAGCAGTTCATGATTTAGTCCTCAGAAATGGACTAGGAATAGA10.9259259259259258No Hit
AGCTGGAGGTGCGTGGCTGTCTGTTCCAGGTCGATGATGTCGTGGTCCAG10.9259259259259258No Hit
CCGTAATATAGGCCTCGCCCGATGTGTAGGAAGAGGCAGATAAAGAATAT10.9259259259259258No Hit
CTCCGGAACCTGCCTGAGTACGCTCTCCTGTGCCAAGAGCACGCGGCTGT10.9259259259259258No Hit
GGCTCACCTCCGCCGTGCGGCCGGTGGCCCCCCCGCCGACGACCAGCACC10.9259259259259258No Hit
GCGCTACTCTCTCTTTCTGGCCTGGAGGCTATCCAGCGTACTCCAAAGAT10.9259259259259258No Hit
GGTCTTGAGGCTGTAGATGGAGCAGATGTTGTCCAACCCCCCACAGGCCA10.9259259259259258No Hit
GGGCAGCTTCTTGGTGTGCCAACGACTGGTGACCCCTTTGTAGCCTTTGC10.9259259259259258No Hit
GTTGTGGGGACCATCAGAAAGTTCCAAATTTTGTAAAATTCATTGGGTTA10.9259259259259258No Hit
GTCAGTGCATAAAGACATACTCCAAACCTTTCCACCCCAAATTTATCAAA10.9259259259259258No Hit
CTCCATGTTTGATGTATCTGAGCAGGTTGCTCCCCAGGTAGCTCTAGGAG10.9259259259259258No Hit
ATATTAAATTTCATAGTAAAATGCCGCATGTGCACATGTATACAGATAGT10.9259259259259258No Hit
TCTTAAGGGAGGTCTTCAGGAAGTTGCTGATCAGTTGGATTTGCAGAGGA10.9259259259259258No Hit
GAATTTATCCAGCACAAAGCTGACACTCCTGCAGAGAAAGCTCCAACCGG10.9259259259259258No Hit
GGTATCTAGAGTCACCAAAGCCGCCGGCGCCCGCCCCCCGGCCGGGGCCG10.9259259259259258No Hit
CTGCTGGGGTCCAGCCTCCCGCTCCCGCGGGCCCAAGGCACTCACGCGGC10.9259259259259258No Hit
CCTTGCTTACATAAATGCAAAAAGTCGTGCAGAAGCTGCTTTAGAGGAAG10.9259259259259258No Hit
ATGCACCACCACCCACGGAATCGAGAAAGAGCTATCAATCTGTCAATCCT10.9259259259259258No Hit
TTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGAAGGAC10.9259259259259258No Hit
ATCTCGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGTTGGGGGACGCC10.9259259259259258No Hit
CTTCCAGAGCCTGTCCGGAGCTCAGAGGTTCGGAAGACTTATCGACCATG10.9259259259259258No Hit
AGCCTGGGAAGAGACCTTTACCTGTGGAATCCCCGGATACTCAAAGGAAG10.9259259259259258No Hit
GCTCCAGAGTTCATGGAAATGAGTGTTGAGCAGGAAATTCTGGTGACTGG10.9259259259259258No Hit
CTACAGAACTAGGTCCTTTTGGTGTTTTAGGAGTTTTTTTCCTGTTTATT10.9259259259259258No Hit
GCCTAGACCTGTCTGACAATCCTGGACTGGGCGAACGCGGACTGATGGCG10.9259259259259258No Hit
TTCCAGGGGCTGGGAATAAGGTGGAGGAATAGCCATCAGAAGAAAGGGCA10.9259259259259258No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCGCGTGCGTGCACAGGG10.9259259259259258No Hit
ATCCTGGGCTGCGAGCTCATCCAGGCCGCCGGCATTCTCCTCCGGCTGCC10.9259259259259258No Hit
GGATTCCTGGAACAGCACTATAATATAGGCAGGTTCCTGCAGTCCTTTCT10.9259259259259258No Hit
GTTCCTTTGGTCGCTCGCTCCTCTCCTACTTGGATAACTGTGGTAATTCT10.9259259259259258No Hit
TTCCAGATCAGGACGAGGGCCGCAACAAGCAGCCCGGACATGACGAGACG10.9259259259259258No Hit
GTCCCCTGCTGCTATAACTTCACCAATAGGAAGATCTCAGTGCAGAGGCT10.9259259259259258No Hit
CAGTTCCTGCAAGATACCACAGCAGGTGAGAAATCATCTCAAAGAGTTCA10.9259259259259258No Hit
TTCGTATTGCGCCGCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGAC10.9259259259259258No Hit
CCGCATCGCCGGTCGGCATCGTTTATGGTCGGAACTACGACGGTATCTGA10.9259259259259258No Hit
GGGCGGTGTCCTGCCCAACATCCAGGCCGTATTGCTGCCTAAGAAGACGG10.9259259259259258No Hit
GTCCTGAATGTGGCTTGGTTGTAGGTGACCGGGTTATTGATGTGTGATCT10.9259259259259258No Hit
CACTTTGGGAGGCCGAGGTGGGCGGATCACCAGAGGTCAAGAGTTTGAGA10.9259259259259258No Hit
GTTTTCTAAAACATGACGGAGGTTGAGATGAAGCTTCTTCATGGAGTAAA10.9259259259259258No Hit
GCCACACACCCGTGAACTCGCTGAAGTTCACGCCGGCCTTGTTCTCACGG10.9259259259259258No Hit
GTTTCAGATGGCTTATTCAAACCTCCTTAGAGCTAACATGGATGGGCTGA10.9259259259259258No Hit
ATCTGGAGGGTCAGGCCACTCTTTTTCTTCAAAATAATGGGGTGCAGAAG10.9259259259259258No Hit
TCCACACACCCGTGAACTCGCTGAAGTTCACGCCGGCCTTGTTCTCACGG10.9259259259259258No Hit
CTCCCCGGGTCGGGAGTGGGTCATTTGCGCGCCTGCTGCCTTCCTTGGGT10.9259259259259258No Hit
GTCTCGCTCCGTGGCCTTAGCTGTGCTCGCGCTACTCTCTCTTTCTGGCC10.9259259259259258No Hit
CAGGTTCTTCATGGGGCAGGTGAAATACTTCTACCCCATGGGTAAATGTC10.9259259259259258No Hit
GCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCGGAGGTTCG10.9259259259259258No Hit
TCTGAAGATGGCCTAGAAACATTATTTCCTTCATCTAGAGAAGAGAGGGT10.9259259259259258No Hit
CTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATTAACCAGACAAAT10.9259259259259258No Hit
GTGGATCCGAGTGCTGTTTGGAGAAATCACACGTTTGTTGAACCACATCA10.9259259259259258No Hit
ATCCAGGAAAGAACGGGGTTCCAAAATAAATGTAGGCAGAACCACCTTGG10.9259259259259258No Hit
AATTAAGCAGCAGGCTCCACTCCTGGTGGTGCCCTTCCGTCAATTCCTTT10.9259259259259258No Hit
CGCACACACTGCCCGCACAGGGCTCGCTCACACTGACCGCAGACCGCCTT10.9259259259259258No Hit
TTTCCCACCTAGCATACCAATTCGAGTCCTTTTCAAAGCCTGATTAGTTA10.9259259259259258No Hit
ATCCAGGAAAGAACGGGGTTCCAAAATAATTGTAGGCAGAACCACCTTGG10.9259259259259258No Hit
GTCGCGTTCCTACGCGACCACGTGCGTTAGCGCGGTCAGCGAATCACGTA10.9259259259259258No Hit
CCCTAACACAGAAAAGAAAAACCAAATGCTGCATATTGTCACTTATAAGT10.9259259259259258No Hit
GGCTAGAATCCTGCCATGAGGGTGTCATGTCTCAGGACGCTGGTTAATGT10.9259259259259258No Hit
AATGAGGATTATGCGGGACATGAAAAAACAGTGCTTCGGCTGCTTGAGGA10.9259259259259258No Hit
GTTTTTAAGTTCCTTTTTAGATCAAAGTCCTAGAGTTGGAGTGGATAGTT10.9259259259259258No Hit
GGAAACCAAAGTCTTTGGGTTCCGGGGGGAGTATGGTTGCAAAGCTGAAC10.9259259259259258No Hit

[OK]Adapter Content

Adapter graph