FastQCFastQC Report
Tue 10 May 2022
EGAF00003628904

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003628904
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472471
Sequences flagged as poor quality0
Sequence length100
%GC50

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GCTAAGAGGTATTTATTCAGTTGCTGGCACCTCTCCCAGTGTAAATCTGG11420.2417079566788226No Hit
CAATAATACAGCACATAAAAGAGATTACATTAAGAGAAGAGACAGGAACT10590.2241407409131989No Hit
GTACATGGGGAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCA8850.18731308376598776No Hit
TCTTTATCCAGTGTACAAAGCTTGAGACTTTGGTGCAGGCTCGTGGAGGC8230.17419058524226885No Hit
GATTAAGAGGGACGGCCGGGGGCATTCGTATTGCGCCGCTAGAGGTGAAA7590.160644780314559No Hit
GTATTTATTCAGTTGCTGGCACCTCTCCCAGTGTAAATCTGGACTTGGCT7030.14879220100281287No Hit
GTACATGGGAGCTCCAACCAGGGCAGCCTTCCTGAGAAGATGCAACCAAT6990.147945588194831No Hit
GTATCAACGCAGAGTACATGGGGAATAATTGCAATCCCCGATCCCCATCA6960.1473106285888446No Hit
GTCGTAATAATGGCGTAAGTCAGATTCGCACTTTCGATCTTCCTGCACTG6160.1303783724292073No Hit
TCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATT6100.1291084532172345No Hit
GTACATGGGTACCTGGTTGATCCTGCCAGTAGCATATGCTTGTCTCAAAG5850.12381712316734783No Hit
CTTTAATATACGCTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGA5450.11535099508752918No Hit
TCCCCATAGGGGACACTTATCCTTTGGCTAAACTAATATAAATAATGGAA5300.11217619705759718No Hit
TTCTTACACCGCGAGGAAGCTTCCTCGCAACTTTGTGGTAGATTACTATG5280.11175289065360626No Hit
GAATAGGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGAT5200.11005966503764252No Hit
ATCAGATACCGTCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCG5000.1058266009977332No Hit
GAATAATTGCAATCCCCGATCCCCATCACGAATGGGGTTCAACGGGTTAC4930.10434502858376493No Hit
CTATTGGAGCTGGAATTACCGCGGCTGCTGGCACCAGACTTGCCCTCCAA4750.10053527094784653No Hit
GTTATTGCTCAATCTCGGGTGGCTGAACGCCACTTGTCCCTCTAAGAAGT4750.10053527094784653No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)