FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003629073

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003629073
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences100
Sequences flagged as poor quality0
Sequence length100
%GC45

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT44.0Clontech Universal Primer Mix Long (96% over 26bp)
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG33.0Clontech Universal Primer Mix Long (96% over 26bp)
ATCAAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG33.0Clontech Universal Primer Mix Long (96% over 26bp)
ACACATAGGAGAACAATTCAAATGACTTCAGCTTCCTCATGAGGAGAGAA22.0No Hit
ACCTGGGGAGATATCTATTTAGGAACAAAAGGAAAGGCAGTTGTGTGTGT22.0No Hit
GGCCACAAGCGCATCGCCTGCATCGGCGGCCCGGTGGGCGTGATGCCCAG22.0No Hit
GCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGT22.0Clontech Universal Primer Mix Long (96% over 26bp)
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA22.0Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAG22.0Clontech Universal Primer Mix Long (96% over 26bp)
CGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCC22.0Clontech Universal Primer Mix Long (96% over 26bp)
GTACATGGGAAGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAA22.0Clontech Universal Primer Mix Long (95% over 21bp)
CTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGC22.0Clontech Universal Primer Mix Long (96% over 26bp)
GCAGAGTACATGGGAAGCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAA11.0Clontech Universal Primer Mix Long (95% over 22bp)
CACAAGTACTCTGCGTTGATACCACTGCTTCCAAAGTACTCTGCGTTGAA11.0Clontech SMART CDS Primer II A (100% over 26bp)
AAAGTACTCTGCGTTGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTT11.0No Hit
CATAGCGGTCCGACTTGGTGTACCAGCTCAGCCAGCCGCCCGTGTCCTGG11.0No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTATACC11.0No Hit
GGTTCAAGCAATTCTCATGTCTCAGCCACCGGAATAGCTGGTTACAGGCA11.0No Hit
CCATTATTAATTTTCTTAATTCACTTTTCTTTCCTTGAGAGATGAGTGGA11.0No Hit
GTACCTTTCGAGCCCCGCGCGTACTAGGCAGATAAGAACCCTCCAGCTCG11.0No Hit
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC11.0Clontech SMART CDS Primer II A (96% over 26bp)
GCAGCTAGATGTGGACCTGGACATCTACCTTTTACCATAAACAAAAGTCA11.0No Hit
AGACAGGGTTTCACCATGTTGGCCAGGCTGGTCTCGAACTCCTGACCTTA11.0No Hit
ACAGAAGGTGACGCCATGAAAGGGAAGGGGACGTTCCTCGCCATCGAGGA11.0No Hit
CTTATACACATCTCCGAGCCCACGAGACCTCTAAGACAGGATCTCGGATG11.0No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTAAA11.0No Hit
GTGTAGGAAGAGCCTACAGCCCTCAAAATCAATAGCAATTATAGAAGCAC11.0No Hit
CTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGTTGATACCACAGGTTCCC11.0No Hit
ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGC11.0Clontech Universal Primer Mix Long (96% over 26bp)
CCTTGAGCTATGATTGTCGTAATTTTCCCTTTCCTGCATCTCATTTGGTG11.0No Hit
CTTTACGAGGTGTCCGTCTAGCGAAGCAGAACGGCTGGAAAGCTCCAGAT11.0No Hit
CCACTGCTTCCATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTG11.0Clontech SMART CDS Primer II A (96% over 26bp)
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAAAATGCGTTTACT11.0No Hit
TATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGG11.0Clontech Universal Primer Mix Long (96% over 26bp)
TATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTAAAATGCGTTT11.0No Hit
GTACATGGGTAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGT11.0Clontech Universal Primer Mix Long (96% over 27bp)
GAAAGGGGTAGGAGAAGGTCAGAGAGACTTTCCTGCTTCTGTGCTTTTCT11.0No Hit
GAGTAGGGAACTGCCAGGCATCAAATAAAACGAAAGGCTCAGTCGAAAGA11.0No Hit
CTAATAGGGAACGTGAGCTGGGTTTAGACCGTCGTGAGACAGGTTAGTTT11.0No Hit
CTTTATAAGTTTTAAGCAAAAGCCACAAAGAAATATCTTAGTAATGTTAT11.0No Hit
GTTTATGGTCGGAACTACGACGGTATCTGATCGTCTTCGAACCTCCGACT11.0No Hit
ATACTACGTGTTGCGCGAAGCGGGGACCGAGGCTCCCTTTGTCGGCGAAT11.0No Hit
TATTAAGTCCATTTTGTCTATTTTTAAAGTTTTCTTTGGTACTTTTAGTA11.0No Hit
CGCTTGGCGAGGAGCTGAGCCACCGTGGTTTTGCCAGACGCAATGCCCCC11.0No Hit
CCCTTCCTCCACTCTTTACCAACATTAGTGTCGTTATACATGACACTAAT11.0No Hit
CTATTAAGAGAATGTGTGCCATTGTGGCCAGAACTCCTAGTTCTTTATGA11.0No Hit
GCCACCATCAGGCTGGTATCAACGCAGAGTACATGGGAGAGGAATGGGAC11.0No Hit
GGACTATGGCGAGAAAACTGAAAATCACGGAAAATGAGAAATACACACTT11.0No Hit
CTTTTTTTTTTCAATTTGAAAGCAGTCATTTTAGTAATTGACTAGGTTAC11.0No Hit
GCGTTTGTATAGCCGACAAGCGCAATTTGAAGCACACCGTTTTTCTTTCT11.0No Hit
TGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAAC11.0Clontech SMARTer II A Oligonucleotide (100% over 25bp)
TTCCACCACTGTTCCTTCTTCTTGGATCTGGGCCTCAGTGTGAAGTTTCA11.0No Hit
CATCTTTTATGTTCATTTGAGACAAGGAGAGAAACACTGATTTTATTACA11.0No Hit
ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGAAGCA11.0Clontech Universal Primer Mix Long (96% over 26bp)
GAGTACATGGGGAAGGGCCCATCAGTTGCCACTCGGATGATCCTTTTGTC11.0No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGT11.0No Hit
GTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT11.0No Hit
CAGTGATATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGT11.0Clontech Universal Primer Mix Long (100% over 23bp)
ATAATGCTTCGAATGAACATATGATCATTTCCTTAAGTATTCCCCTACTA11.0No Hit
GTCATAACTCCACACTATTTAGTATAGTACAAATAGGAAATACATCTCTA11.0No Hit
TTCTTAGTGATCATTGGATTGAACTAACAGAGCTGAACATTCCTTTAGAT11.0No Hit
GAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTTTTAAACA11.0No Hit
GGTAAGCAGTGGTATCAACGCAGAGTACATGGGCTGTCTCTTATACACAT11.0Clontech Universal Primer Mix Long (96% over 26bp)
GGAATATGGCGAGAAAACTGAAAATCACGGAAAATGAGAAATACACACTT11.0No Hit
TAGTTGGATCTTGGGAGCGGGCGGGCGGTCCGCCGCGAGGCGAGCCACCG11.0No Hit
CAAAAAAAAAAAAAAAAAAAAAAGTACTCTGCGTTGATACCACTGCTTCC11.0Clontech SMART CDS Primer II A (100% over 26bp)
CATCATGATGGTGCCTGGGTGATAGTGGACACTTGGGTTCGGGTACGGGG11.0No Hit
AGACCACCTCGGCCAGGGCCGCCCGATTCAAGCTACCGTCCTCGTTGAGG11.0No Hit
CCCAAGTACTCTGCGTTGATACCACTGCTTCCCAAGTACTCTGCGTTGAT11.0Clontech Universal Primer Mix Long (96% over 26bp)
TTACAGAGGAGAACAAGACACATTTTTACTCTCATGGAATTCATTTATTT11.0No Hit
AAACAGTGCTGAGTTCGGCTTCCATCCGGATTTTGCGGGTATCTCTGTTG11.0No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTCTGTC11.0Clontech Universal Primer Mix Long (100% over 23bp)
GCAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA11.0No Hit
CCTCTACTGTCCGATGGCACTGGCTGTGTCACACCTGGCCTGTGGCACAG11.0No Hit
CAGTGGTATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGTAT11.0No Hit
AAAAAAAAGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTG11.0Clontech SMART CDS Primer II A (100% over 26bp)
CTTGGGCCCTACCCCAGTCCCACTGAATCAGAAATTCTGGGAGGGGACCC11.0No Hit
GGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGC11.0Clontech Universal Primer Mix Long (96% over 25bp)
GGGTGAGACTGTGCTTGGCTCTGTAGTTACTGTCATGTGGCATGATAGAA11.0No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTT11.0No Hit
ACGCATGGCCGTACGTGTTGACGTGGGCACCCCACGCGAGCGCCTCATAG11.0No Hit
AGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCA11.0No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACTTTTTTTTTTTTTTTT11.0Clontech SMART CDS Primer II A (100% over 26bp)
GCTGATCACAGTGAGCCTGGGGGCCCTAGGCTCTGGCAAGTACACTCTGT11.0No Hit

[FAIL]Adapter Content

Adapter graph