FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003629075

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003629075
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences195
Sequences flagged as poor quality0
Sequence length100
%GC47

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
CCCGAGTGGAATGCAATGGAATGGATTGGAACGGAATGGAACGGAATGTA31.5384615384615385No Hit
GTATCAACGCAGAGTACATGGGAGAAGCCGATACCGTGAAAGAAGAAAGA31.5384615384615385No Hit
CCGGATTTCAGCACCCATGACGGTGCCATTTCCTTCCTTGTCAAACACCC31.5384615384615385No Hit
GTGAGATGCCGTCTACGAGTGGCACGAATCGCACGGATGTTTGGTTAAAG31.5384615384615385No Hit
ATCAACGCAGAGTACATGGGACTCTCCTGTAAAACGCTAGAGCGGCGAGT31.5384615384615385No Hit
ATGTAGTGCTGCATCGGCGTCCAGCCGGTGCCGCCGTGCTCCACCGGCCA31.5384615384615385No Hit
AATAAGGGTGGATAAAAAATAAGCCCAGATAGTGAACACTACAATAAATA21.0256410256410255No Hit
TCCTTAGAGAATCTGTTTTGATTCTGGGCTGAGTTATTACAGTTATGGTA21.0256410256410255No Hit
ATTTGATGATGATTCCATTCGATTCCATTTGATGATGATTCCATGCGATT21.0256410256410255No Hit
TTTTTTTTTTTGCTAAAAACTGTAGGCTTTTTTATTCAGTTAAGAGGTAG21.0256410256410255No Hit
GTACATGGGGAGCGGAGCAGAGCCGAGGTCGGGCCGCGAGCGGAGCCGGC21.0256410256410255No Hit
CGCTGGGACAGCCCCTCCCCGCTGCTCGGCGGCGGCACCTGGCCCGGCCG21.0256410256410255No Hit
TCACACGGCAGGCATACTCATCTTTTTCAGTGGGGGTGAATTCAGTGTAG21.0256410256410255No Hit
GAAGATATCTGTTAGCTAGAAAGAAGATATGAATGGTTCTTTGGTATGTA21.0256410256410255No Hit
GCCTTCAATAATCTGGAGAATCTTGTCTTTGGCAAAGGATTCCAAGCAAA21.0256410256410255No Hit
CATATCAGGCTATATTTGGTCCGGGTTATTATCGTCGCGGTTACCGTAAT21.0256410256410255No Hit
TGCGTGGACGGGATCTCCATCGAGGCCTTGTCCGACTCGACCATCACCAG21.0256410256410255No Hit
CCACCTGCCTTCCATTTTGAAGTGGGATGTTAATGAAATCAAGTTCCAGT21.0256410256410255No Hit
ATGGTATAGCGACATCATACGCTTTTGGAGTTCTAATAAAGGAGCTATAG21.0256410256410255No Hit
GCTTTAAATGACGCAATTCTCCCTGCGTCATGGATTTCAAGGTCTTTTAA21.0256410256410255No Hit
GCCAAATAAGGTACCGATGGAGATTTCTTATAAAACGAAGGAAGCAGCCT21.0256410256410255No Hit
GTGTAAATGAGTGAGGCAGGAGTCCGAGGAGGTTAGTTGTGGCAATAAAA21.0256410256410255No Hit
CTCCCAATTAATCTTTCCATTTTCGTCTGCGTTTAGTAAATGCGTTAACT21.0256410256410255No Hit
GGGGATCGGGGATTGCAATTATTCCCCATCACGAATGGGGTTCAACGGGT21.0256410256410255No Hit
ACCATGACGGGTTAGAAGCTCCTAACTCCACTTCCAGGGCTGCCTTCAGA21.0256410256410255No Hit
CATATATACACACCCCTCCCACATTTTCTTTATCCACTTGTTAGTTGATG21.0256410256410255No Hit
CTTCTGGGACCTGCCAGCACCGTTTTTGTGGTTAGCTCCTTCTTGCCAAC21.0256410256410255No Hit
GGTCCCGGGGAAACGAAACTGGAAACCGACCGCCGCCATATCAGAAATCG21.0256410256410255No Hit
GGTTCAAGTGATTCTCCTGCCTCAGCCTCCCAAGTAGCTGGGATTACAGG21.0256410256410255No Hit
GCTAAGTTCAGTAATAGTAGATTAATAAAAGTTCAGTAACAGGACATTAA10.5128205128205128No Hit
GACTGGAGCTGTTCCTATTTGGCCATCTTGGAATGGACAAGAGGCTCTCT10.5128205128205128No Hit
GAAGTTGACTTACTGAAGAATGGAGAGAGAATTGAAAAAGTGGAGCATTC10.5128205128205128No Hit
GAAATAGCCAATCTCTACTAAATCCTTTTTAGTCTTCGAGATTTCCGCGG10.5128205128205128No Hit
GGACAGGATTGACAGATTGATAGCTCTTTCTCGATTCCGTGGGTGGTGGT10.5128205128205128No Hit
GGGGTAGACAGCGTCTGACGAACAGCTTGAATGAAAAGCTGACTGAAGAG10.5128205128205128No Hit
AAGTAGGAGAGGAGCGAGCGACCAAAGGAACCATAACTGATTTAATGAGC10.5128205128205128No Hit
AGCGTGTCCGGGGCCACCGTCACCACGCCTTTCGATGCCGCGAGCTCCTT10.5128205128205128No Hit
GGCCCCGGTCACGTCGCCAACCATCTTCCTGTCCCTAGACTTCACGGAGT10.5128205128205128No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG10.5128205128205128Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GACAAAGTCACATGGTTCACACGGCAGGCATACTCATCTTTTTCAGTGGG10.5128205128205128No Hit
CTTTGTCAAAGCTTTGCGGGAGGGGGCCGTACACATAGTGCTTCTGCCAC10.5128205128205128No Hit
ACTTACAACAGTATCATCCAGCAAAGAAGTTCAAGATTCACTGTCTGTTG10.5128205128205128No Hit
GAATGTCTCCAAACAATGGAACCAAAAGAAACACAGTAAAATTCTCCTGT10.5128205128205128No Hit
GTCTTTTAAGTGCATTTACTAATACAGTACCCTTCTGGAAGTTTGATATT10.5128205128205128No Hit
GGTTCACTGCAACCTCCACCTCCCAGGTTCAAGCAATTCTCCTGCCTCAG10.5128205128205128No Hit
CGCTGGGACAGCCCCACCCCGCTGCTCGGCGGCGGCACCTGGCCCGGCCG10.5128205128205128No Hit
CAATAACGCGGCACATAAAAAAGATTAAATTAAGAGAAGGGACAGGAACT10.5128205128205128No Hit
GTTTCTTTCTTTGCAATCAAAGTTAATTTGTCATCAGTTCAAAATAACTT10.5128205128205128No Hit
CATGTACTCTGCGTTGATACCACTGCTTCCATGTACTCTGCGTTGATACC10.5128205128205128Clontech SMART CDS Primer II A (96% over 26bp)
TTAAAAATGTGCTTTCACTTCAGTTATTATTATAATGTAGGCTATACCAA10.5128205128205128No Hit
ATGGAAGGTCGTAGAGGAAGACCACCAAATCCAGATAGACAACGAGCAAG10.5128205128205128No Hit
TGGCCACCGTGATCGACGGCTGCGTGGGCTGCGGCCTGTGCGGCGCGAAT10.5128205128205128No Hit
CTTCATTTATTTTATTAATAAGCAAAGCCCTGTAAGGGGAGCCTTTGCCT10.5128205128205128No Hit
ACTCTAGCCTGGGTGACAAGGAGGAAAACGAGTTTAAAAAAAAAAAAAAA10.5128205128205128No Hit
GGGGAAAATTCAGTGTAGTACAAGAGATAGAAAGACCAGTCCTTGCTGAA10.5128205128205128No Hit
CCCTTCCATTGGACTCCTTTCCATTCGAGTGCATTCCATTCCGTTCCATT10.5128205128205128No Hit
GAAATACCGTGCCCTGAGGTTGGACGTGGGGAATTTCTCCTGGGGCTCAG10.5128205128205128No Hit
AGTGTATTTAGGACGCACGCAGCCCTATTACGAGGGTTGTAGTCGTGTGG10.5128205128205128No Hit
GTCCAACCCTCTTGCCCTTCGCCTGTGTGCCTGGAGCCAGTCCCACCACG10.5128205128205128No Hit
GAGATACACATGCCATGTACAGCATGAGGGGCTGCCGAAGCCCCTCACCC10.5128205128205128No Hit
ATCTTATGACTTTCTAACCACTGATTTACATCCTCTTTTGTCCAATCATC10.5128205128205128No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTGCCAGTGCCGC10.5128205128205128No Hit
CCTTTCCCCCTTTCACGAAGAAGGCTCATCAAGCCTTCCGCTGCTGCTTT10.5128205128205128No Hit
GGAGAGGGAACATGCTGAGAAACTGATGAAGCTGCAGAACCAACGAGGTG10.5128205128205128No Hit
TCGTGTACCCGCGGAAATCGATGCTGACCGGACGTTCGTAGCCGGCTTCG10.5128205128205128No Hit
TGACTTCCCAAATCACACAAGCAGCAAGTGGGGCCTCAAACACACATACT10.5128205128205128No Hit
GTCGGATGGCCGCTTTCCTTCGTCATCATCATCAATCACCCTCAAAGGAG10.5128205128205128No Hit
ATTCGATGATGATTGGATTCGATTCCATTTGATGATTTCATTTGATTCCA10.5128205128205128No Hit
GCCTCGTGGTGTGCCGGGGCACGTCCGTGGTGCTAATCTGCCCGCAGGAC10.5128205128205128No Hit
CCTAAGGACTCAGAAGAAATAGATGATGTGACCAGACAACTCCAGGAGAA10.5128205128205128No Hit
GGCCAGAACAAACAACATTCTATTACCAAGAACACGGCCAAGCTGGACCG10.5128205128205128No Hit
GCCTCTCAAGTAGCTGAGACTACAGGCGTGCATGACCACACCCAGCTAAT10.5128205128205128No Hit
TCACTGTACACTGGACGTCAGCAAACACCTGAACCTGTTGCACCTGCTGG10.5128205128205128No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTAGTTTGG10.5128205128205128No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTATATGTATAAA10.5128205128205128No Hit
CAGTTAAACTTACTTCAGGAAGAGATGCCCAGACCCTCTGAATCTCCAGA10.5128205128205128No Hit
GTATTATCATTGTTTCCATTTTACAGATGACTTAACTGAGGTGCAGTCAG10.5128205128205128No Hit
GTATTGGGACCGGGAGACACAGAAGTACAAGCGCCAGGCACAGGCTGACC10.5128205128205128No Hit
TGTGGGGACAGCTCATGAGTGCAAGACGTCTTGTGATGTAATTATTATAC10.5128205128205128No Hit
TGCCAGTAGCATATGCTTGTCTCAAAGATTAAGCCATGCATGTGTAAGTA10.5128205128205128No Hit
CCTCATTGGTGGGGCTCCTGACGCCCCAAGAGGCGGACGTGACTTGCCTA10.5128205128205128No Hit
CCAACTAAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCTA10.5128205128205128No Hit
CTCACAACCATCAACAGCTGTTCTATGTCTTTACAGCATATGAGCTCATT10.5128205128205128No Hit
TTCCATTCGAGTCCATTCGATGATTCCATTCGATTCCATTCGATGATGAT10.5128205128205128No Hit
GACAAACCCCCATGACACAAGTTCCCTTATATAACAAACCTGTACAGGTA10.5128205128205128No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTA10.5128205128205128No Hit
GTCCAAGGCTTGTTAGGATAGTTAAGAAAGCGTCTGGGGTTTTACCCCAC10.5128205128205128No Hit
GTCCCCAGCTAATTTTCACAACTCGGAGTCCCTTGCTTCCAAACACAGCC10.5128205128205128No Hit
GGCTAGAAGATGGATGCCGTGGGGAGCCCAGTCAATCATAAAAACAGGCA10.5128205128205128No Hit
CTGTATAATCAGGTCTTTATTCAAAAGAAGCTGTCCAAAATGATTTGACC10.5128205128205128No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTGTGAAATAA10.5128205128205128No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGTT10.5128205128205128No Hit
CTCCCTCCACTGAGCCACATTTAAGGCCACAGAGGCTCCAATACCTGGGA10.5128205128205128No Hit
GTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGCTGTCTC10.5128205128205128No Hit
TGTATGTACTATGTGGTATGGAAACTTTTTTAAAACAATTAAAGGTGAAT10.5128205128205128No Hit
ACCCATTCGAACGTCTGCCCTATCAACTTTCGATGGTAGTCGCCGTGCCT10.5128205128205128No Hit
GTTAAGGGAAAGCGCCGAGATGACGGGCTTTCTGCTGCCGCCCGCAAGCA10.5128205128205128No Hit
CTTTGGCAGCATAAGGAAAAAATACCCAGGGACAAGTGGCGACTTTGGAA10.5128205128205128No Hit
GACCAGAGTGTGACCTACCAAATCTGCCTGAATTATACTTGGCCACTGGG10.5128205128205128No Hit
ACACAATTCTTCTTCCAACGTGGCCCAGAGAAGCCAAAAGATTGGATACG10.5128205128205128No Hit
CGTGGAGGCATGCCATTGTTTCGTCCATAGGAGACAATGCCCTGGGCCAC10.5128205128205128No Hit
TCTGACTGATTACTTCCTGGCACACAATGCACCTCCAAAAGCCAACTTTT10.5128205128205128No Hit
GTCAATAGGTTACTAAGATATTGCTTAGCGTTAAGTTTTTAACGTAATTT10.5128205128205128No Hit
TATTCAGACTTCTTTGAGGCTTTCGTTGGAAACGGGATTTCTTCATATTC10.5128205128205128No Hit
GGCTCGAGCGAATTCGGACACGGGGCCCGGTCGCTCCGCCCGCGTCCCTG10.5128205128205128No Hit
GCTGTGATGGGGAGAGGAAATTGTTTCCTCGAGTCGTTGATTTAACACTG10.5128205128205128No Hit
GAGCAATGAAGTATAAACAACACTGCACCCTGTTATCAGGCATCTGACGT10.5128205128205128No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTCGGGTAAAACG10.5128205128205128No Hit
CGTGTGAACCATGTGACTTTGTCACAGCCCAAGATAGTTAAGTGGGATCG10.5128205128205128No Hit
CAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATAAAAGCAGATT10.5128205128205128Clontech SMARTer II A Oligonucleotide (100% over 22bp)
GGTGTGCCTGGCCACAGGCTTCTTCCCTGACCACGTGGAGCTGAGCTGGT10.5128205128205128No Hit
TACATGGGGCGCCTGACCGCGGCAGCTCCCACCATGGCGGAGACCAAGCT10.5128205128205128No Hit
ATCTTTGAGATCCTGCCAGCTGACTCTTGAGGATAAATTCTCAACTATAA10.5128205128205128No Hit
CTCTCATAGCAAATATTTGAGAAAACAAATTTATATTCAGATTCTTATTT10.5128205128205128No Hit
GCCCAGCCAGAGCCCTTCACTGGAGTCAGTCTGCAGAAGAAAACAGTCTG10.5128205128205128No Hit
TCCCGTACTTCTGTCTTCCAGTTTTCCACTTCAAACTTCTATCTTCTCCA10.5128205128205128No Hit
GAGTCAATCTCTCTTACACACACACACACACACGAGGGGAGTCAATCTCT10.5128205128205128No Hit
ACCTAAAATAAACAGTTTGCTAGTTTGTGCTTGGAGATTTATAGATTGTA10.5128205128205128No Hit
AGATTAATGTTAACAATCTCCCCATATTGTGAGAACACACAGATGATGTC10.5128205128205128No Hit
GCTCAAAATGGAGTTGCCGGAGAGACAGCCCAGGTTCGTGGTTTACAGCT10.5128205128205128No Hit
GTATGAATTCCCGCTTCCAACGAAATCCTCCAAACTAGCCAAATATCCAC10.5128205128205128No Hit
GTTCAGAACATGAACCCAATGATGGCCCAGATGCAGATGAGCTCTTTGCA10.5128205128205128No Hit
TCCTCCTCTTCCTCCCCACCTTCTTCCTCTTCTTCGTCTACCTCATTGTC10.5128205128205128No Hit
AGTTATCCCTGTGGTAACTTTTCTGACACCTCCTGCTTAAAACCCAAAGG10.5128205128205128No Hit
TCCCAGCATCAGGCGCAGCAGCTGCACTTGTCCGACGCCCCTTTGCAGAT10.5128205128205128No Hit
GAAGGCAATGCTTGTGGAATGTACAGTGCATATTGGCGGCGCACGCCTCA10.5128205128205128No Hit
ATGTGTAAGTACGCACGGCCGGTACAGTGAAACTGCGAATGGCTCATTAA10.5128205128205128No Hit
GCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCAACACCAA10.5128205128205128No Hit
AGATATAGTACCGCAAGGGAAAGATGAAAAATTATAACCAAGCATAATAT10.5128205128205128No Hit
GTTAAGTAGGGCCATATGCCTCGGGAATAAGCTGACGGTGACAAGGTTTC10.5128205128205128No Hit
GTCCCAGAAGTGCCTTCAGGACAACAACTGGGACTACACCAGATCTGCCC10.5128205128205128No Hit
GATCAGTTAAGTAGGGCCATATGCCTCGGGAATAAGCTGACGGTGACAAG10.5128205128205128No Hit
CCTCTGCGGCCTGATGCCCGCCGAGCCCGAGCCGCTGGGCCTGCTGGTGC10.5128205128205128No Hit
CTTCTAAAACTCTATTATATTTGTAGAACTGCCTTGATTTAGGCCTAACG10.5128205128205128No Hit
CCACACTGTCTTCCACAATGGTTGAACTAGTTTACAGTCCCACCAACAGT10.5128205128205128No Hit
GAAGAGAATAACGAAGAAGAAGCTCTGCCCGATAGATCAGGCTTTACATA10.5128205128205128No Hit
GGTTATGGATGAAATTAACTTATCTGAGCCTTACATTGTCTCACTAGGCA10.5128205128205128No Hit
GTGGTGGCCACTGCGCAGACCAGACTTCGCTCGTACTCGTGCGCCTCGCT10.5128205128205128No Hit
GCCTGGACTCAGCGCGCAGCTGGCGGGAGATTCCCGGCGCGGGGAGTCCA10.5128205128205128No Hit
ATAGAAGGGCAATGCTTTTAGATTAAAATGAAGGTGACTTAAACAGCTTA10.5128205128205128No Hit
TTCATGGCAAATTTCCGAATCTCTTTGAGTGCCCGAGGTGCGGTTGTCCA10.5128205128205128No Hit
GCACCGTGGCGCCCGAGGGCGTCAATGCGACAATCGGCACGCTCGACCGC10.5128205128205128No Hit
ACTCCTGAGGATGCTACTCCCGAGCCCGGAGAGGACCCACGCGTGACCCG10.5128205128205128No Hit
TCCTAGTCCTGTATGCCCTTTTCCTAACACTCACAACAAAACTAACTAAT10.5128205128205128No Hit
CTAAAAAAGAATATTAAAAAAATATAATATAAAAATATAATAATAATAAG10.5128205128205128No Hit
CTAAGCAATATCTTAAGATTTTAAGAGAAAATATGAAGACTTAGAAGAGT10.5128205128205128No Hit
TGCGATGTGTGTCCTCAACTAACAGAGTTGAACCTTTCTTTTGATACAAC10.5128205128205128No Hit
GGAGAGTGACACACCCCTCCAGCAAGTATCCATTGAAGAAATTCTAGAAG10.5128205128205128No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGCGGT10.5128205128205128No Hit
ACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTCCAGTTCCCC10.5128205128205128No Hit
CCCAGCCCTCCAGCCGGCCCATCTTGACCAGGGAGGCCGCTATGCCAAAG10.5128205128205128No Hit
GTCTTCTCCATAGCCATCATGGAACTCTTCATCTTCTGAGGAAGAGTCTG10.5128205128205128No Hit
GCTCAGATACATCAAACATGGAGACAGCACTCAAAGTAGAATTATAAAGA10.5128205128205128No Hit
GAATGGTACCAGCTCCTCCTTGTGCCTCTGGTAGAATTCGACTGTGAATC10.5128205128205128No Hit
TATGAATACCATTCTCTCTAACTTTGCTGGCTGGGGACATAAGCTGCTGG10.5128205128205128No Hit
GGCATGGTGTCAGACACCTGTAATCCCAGCTACTCAGGAGGCTGAGGCAG10.5128205128205128No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGGAGT10.5128205128205128No Hit
GCCTAGTGTTGGAGGGTAGACCAAGGCTGTGCATGATTCACCCCCTCCTT10.5128205128205128No Hit
GCTCAGGAAATAGAAACCGTCTGAACTATCCTGCCCGCCATCATCCTAGT10.5128205128205128No Hit
GCTAACAGATAGAACCCGCCTAAAAAACGTTCTCGGCCAGGTGTGGTGGC10.5128205128205128No Hit

[OK]Adapter Content

Adapter graph