FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003629304

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003629304
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences34
Sequences flagged as poor quality0
Sequence length100
%GC51

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GAACAAACGGAAACTACGTTGACTTTTACCCTCTCGGAGCCACCTCCCGC25.88235294117647No Hit
GGTGATTATGGTGGCCCACTTTTCCTCCTGCCAGGCCTCCTGATCACTTG25.88235294117647No Hit
GTTTGTGGTGGAAATCCGTAAAGCAGTTCGTTGGTTCTGTGGCGGTTGTC25.88235294117647No Hit
CAGACACACAGGTGGCGGGACGTCGAGAGGAGCACATCAGCGGAGGAACA25.88235294117647No Hit
GTGCCTGTCATTCTCGGATGGCTGTGAGGCATTCCTTGGCAAGGGACGCT25.88235294117647No Hit
CATCAGGAGTATCAATCACCTGAGCTCACCATAGTCTAATAGAAAACAAC25.88235294117647No Hit
ACGACGACGAGCACGTTGCCGTTGGCTTCCAGGCGGATGTCCTTGAACAG12.941176470588235No Hit
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTA12.941176470588235No Hit
GCCTAAACATGATCAATAATTATGTCATGTAATCCTCAGAAGAGGAAGTA12.941176470588235No Hit
ATCAGGGACTCTGGCCAGGTCACACCAAGGTGGCTTATGACCCATTAACA12.941176470588235No Hit
AGGCCATACTGGACAAGACCACAAACAAATGTAAAGGCTATGGCTTTGTA12.941176470588235No Hit
GTTTTCTCATGCAGCTATGTTTCTCTTATTTATGCCTTGAGGACTAATTT12.941176470588235No Hit
AGTCTCTTGAAGTCAAAAAGGAGAGGTGTGAAGAAATCCTTCATCTCAGT12.941176470588235No Hit
ACTGAGGCCCAGCGAGAGGGTGACATGTGCCCAAGGTCATGCAGTCAGTA12.941176470588235No Hit
ATTATAAATCCTGTGAATGTCTACGTGCATGTATGCACACTTAGAGGTAA12.941176470588235No Hit
AATTTCAAATGATCTGCCTTCAAGTTCACTAATTTATTCTCCTGCCTATT12.941176470588235No Hit
ACGCCGACCGCTCGGGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGT12.941176470588235No Hit
GTCCCGCCGCTACGACGCCGTCCTGTACGCCACCGGTGCGGCCGGCGACC12.941176470588235No Hit
GGGTGGACGTGGTTGGTGATTGGCAGGATCCTGGTATCCGCTAACAGGTC12.941176470588235No Hit
GCATTTATTGTTAATACTTCTATGTAAGTATGATTTATGTACAGTTTATT12.941176470588235No Hit
GAATTATCAATCAAGCTCCCCGAGGAGCGGACTTGTAAGGACCGCCGCTT12.941176470588235No Hit
ATATCGAAGCCCACGTACTTGTCGCCCTCCTTGAATTCGAAGGGGACGAA12.941176470588235No Hit
GGACCGCGGTTCTATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGA12.941176470588235No Hit
GGACTGATCTCCTGCACTAGGCCCCAACAGAACAGACCAAACCAAAATGG12.941176470588235No Hit
GCTAGAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCA12.941176470588235No Hit
GCGCGCTGCCGGGCCGGCTGGTGCGGCCCGTCGGGCTGCTGCGCGATGCG12.941176470588235No Hit
ATGCTCGAATCGCCGTCGCGGCCGCCGCCGAGCGCGGCGGTGCCGGGCCG12.941176470588235No Hit
GACGGGCCTTGGCATCCTCCGTGGAAATGATATTTTTTATTTTAGCATCG12.941176470588235No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)