FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003629523

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003629523
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences100
Sequences flagged as poor quality0
Sequence length100
%GC52

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
AAGAACGGCCATGCACCACCACCCACGGAATCGAGAAAGAGCTATCAATC33.0No Hit
GGTGGGATGTTGGCCTGCACTGGGGCCAGCGTCCTCAGGAAGGTGTCTTG22.0No Hit
GTACTCTGCGTTGCTACCACTGCTTCCCATGTACTCTGCGTTGATACCAC22.0Clontech SMARTer II A Oligonucleotide (96% over 25bp)
ATCAAGAACAGTTTTAATAAGTGTTTCTTTTGGGCAGGACTGTTCCATTT22.0No Hit
CTGGAATGGAGTGGAATGGAATGGAATGGAATTAACCCGAATAGAATGGA22.0No Hit
GCGCTGGCTTGATCGGCGGCATGGCACACAGGTGCTCGATCATCTCGCCG22.0No Hit
TTTTTTTTGAACTCTGAACTTTTTATTGGCCTCCTGCTCCCCAAAGGGTA22.0No Hit
GGTTAATTGAGAATAGAAATTTGCCCCTGGCAAATGCACACACCTCATGC22.0No Hit
ACATCGAAGGATCAAAAAGCGACGTCGCTATGAACGCTTGGCCGCCACAA22.0No Hit
GGTCTGGAAGGTCCAGTCTCCATTCTGGATCAGGTCTGTGGACACCACCC22.0No Hit
GTCTAGGCCTATATTTGGTCTTACCTCAAACTACAAAGGAATGACAAGAG22.0No Hit
ATCCCGGCGCGCTTCGTCGCCAAGAGCGGGCCGCGCAACCGCGTGGGCAA22.0No Hit
GTACATGGGAAGCAGTGGTATCAACGCAAAAAAAAAAAAAAGTACTCTGC22.0Clontech Universal Primer Mix Long (95% over 21bp)
CCCTGTGCTTCAGCCCTAACCGCTACTGGCTGTGTGCTGCCACAGGCCCC22.0No Hit
TGCTGCAACAGATACCTTATAGCCACAAAACCTAAAATAGTTACTATCTG11.0No Hit
ACATCATTCAGTACAAAAGTCCACACATTATCGCAGAATCTGTACGTATT11.0No Hit
CTTAGATGGAGGAGGTGGGACGTTTGGGCTTGGGGGCTCGGCAAGGCAAG11.0No Hit
GCACAATCTCGGCTCACTGCAACCTCCGCCCCCTGGGTTTAAGCTGTCTC11.0No Hit
AGGTGTCGGTGCAAGGTCTTTCAGCGCGCTGTCGAACAGATCAGCGAGGG11.0No Hit
TTTTATGACAGGGGCTGCAGAACAAATCAAGCACATCCTTGCTAATTTCA11.0No Hit
GCACAGGGCTCGGGCCAGACCGGGATCCACGCCCTGCGCCGCCAGCATCC11.0No Hit
GCGTTGCTACCACTGCTTCCCATGTACTCTGCGTTGCTACCACTGCTTCC11.0Clontech SMARTer II A Oligonucleotide (96% over 25bp)
GGGTTCAACGGGTTACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGA11.0No Hit
GAGTGTGCTCACTCGGTGCTCAGGAAGACTCTCTTGCGTGCGGTATTGGT11.0No Hit
TTGCAGGATTTGGAGTTTTCTTCTGGGTCCCCAGGTAAAGAGACGAATGA11.0No Hit
GGATAATTCTTTGTTCTGAGAGGCTGTTTGGTAGATTGTAGGATGTTTCT11.0No Hit
GCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCC11.0Clontech SMART CDS Primer II A (96% over 26bp)
GCCTGATCCTTCCTTTCCAGCTCCAACTTAAGGCATCTGCCTTTTCCTCA11.0No Hit
GTCCCCACACTGCCCTTTCCCACTGACACCAAGTCCAACCGTGAGCACAG11.0No Hit
GGAGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGAAACCTCACCCGG11.0No Hit
CGGCTAATTTTTTTGTATTTTTAGTAGAGACGGGGTTTCACCGTGTTAGC11.0No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG11.0Clontech SMARTer II A Oligonucleotide (100% over 25bp)
ACAATGAGCTGCGTGTGGCTCCCGAGGAGCACCCCGTGCTGCTGACCGAG11.0No Hit
CCCCCGAGCGGTCGGCGTCCCCCAACTTCTTAGAGGGACAAGTGGCGTTC11.0No Hit
GGGGAAGGGGATGGACGGTCCTCCCCGCGGCGGGGTTTTCAGCCCTCGCG11.0No Hit
AAACCAACCCGGTCAGCCCCTCTCCGGCCCCGGCCGGGGGGCGGGCGCCG11.0No Hit
ACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGA11.0Clontech Universal Primer Mix Long (96% over 26bp)
ACTGTGGTAATTCTAGAGCTAATACATGCCGACGGGCGCTGACCCCCTTC11.0No Hit
AACTATATGCTGCTTACAAGAAACTCACCTTACTGATAAAGACACTTACC11.0No Hit
TGACTGCATAACATTCGTGGGATAGAGAAGCCAAGTTCTCAAGTCTTCCG11.0No Hit
CATTCCTACCTCAGGGCTTGGATTTCCTTTTCTCTCTGCCTGGGTCCCCT11.0No Hit
GGCAGTTTCTAGGGCTCACTTTTCCTCCTTACCTCTTGACTAGTGTAGCA11.0No Hit
GATTGTATTCTTTGTCATGTGTGATTACTGAAATCTGTTTTTTTTTTTAA11.0No Hit
CCCATGTACTCTGCGTTGCTACCACTGCTTCCCATGTACTCTGCGTTGAT11.0Clontech SMARTer II A Oligonucleotide (96% over 25bp)
GCCCCCGGCCGTCCCTCTTAATCATGGCCTCAGTTCCGAAAACCAACAAA11.0No Hit
CAATGGAACGGAACGGAATGTAATGTAAAGTAATGTAATGGAATGGAATG11.0No Hit
CAAGAAGGTCGTACCATGATTTTAGTAACCCACGAAATGCAGTTTGCCCA11.0No Hit
GGGAAGCAGTGGTATCAACGGAGAGTACATGGGAAGCAGTGGTATCAACG11.0Clontech SMARTer II A Oligonucleotide (96% over 25bp)
TGGCAAAGCCGGCGGTCCCGGCGACGACGGCGCATGGAGAACTTCCGTAA11.0No Hit
CCTTCAAGTCGGCCAAGGACCTGCAGCAAGTCGCCCGCACCATTCCGCTG11.0No Hit
GATGAGATGCTGAGCTTCTTCCTCACTCTGTTTCGAGGCCTTAGAGTACA11.0No Hit
ACGATTGATAGCTCTTTCTCGATTCCGTGGGTGGTGGTGCATGGCCGTTC11.0No Hit
GACGCTGGTTCGAGAGTACTTTTCCTGGGAGGGGGCCTTCCAGCATGTGG11.0No Hit
TCCCATGTACTCTGCGTTGCTACCACTGCTTCCCATGTACTCTGCGTTGA11.0Clontech SMARTer II A Oligonucleotide (96% over 25bp)
TCGTAGTTCCGACCATAAACGATGCCGACCGGCGATGCGGCGGCGTTATT11.0No Hit
GTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTA11.0No Hit
GTACATAGGTAACCAAAGTATATAGCTTATTTGGTGAATCTTCATCCTCA11.0No Hit
GGATACCGCAGCTAGGAATAATGGAATAGGACCGCGGTTCTATTTTGTTG11.0No Hit
CCTCAGCAACAACTCTGTGGTGGAGATCGCCAGCCTGCGATTCGTCTTCC11.0No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT11.0Clontech Universal Primer Mix Long (96% over 26bp)
GTACAGGGGAAGCAGTGGTATCAACGCAGAGTACAGGGGAAGCAGTGGTA11.0Clontech Universal Primer Mix Long (96% over 28bp)
GGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACAT11.0Clontech SMARTer II A Oligonucleotide (100% over 25bp)
ACAACATTCAGTACAAAAGTCCACACATTATCGCAGAATCTGTACGTATT11.0No Hit
ACAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCGACGTCGCTAT11.0No Hit
GGGGAAAGGGACAGACGAGGTCAGTACTGGGAACGCCGAAGGTGGGAGGC11.0No Hit
ACTCTCAGTTTACTGCTAAATCCACCTTCGACCCTTAAGTTTCATAAGGG11.0No Hit
GGTGAAACCCCGTCTCTACGAAAAATACAAAGAAATTAGCTGGGCATGGT11.0No Hit
GCCCAGAACCCTGGACGGGCAGATCACCATGGAGAAGACGCCCAGTTACT11.0No Hit
CCGCGGGACACTCAGCTAAGAGCATCGAGGGGGCGCCGAGAGGCAAGGGG11.0No Hit
GCTGGTAACTATCTTCCTGCTGGTGACCATCAGCCTTTGTAGTTACTCTG11.0No Hit
GAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCA11.0Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTT11.0No Hit
GTGAAAGCGGGGCCTCACGATCCTTCTGACCTTTTGGGTTTTAAGCAGGA11.0No Hit
GTGGTGGGGAGTATCCAGATGTATTCACATCAAAGGGCTGGTTCTTGGAA11.0No Hit
GCCACACCCCGTACTCGTGGCCAGCAGTTCCTCTTTGCCTTATATTTGTG11.0No Hit
GAGTATGGTTGCAAAGCTGAAACTTAAAGGAATTGACGGAAGGGCACCAC11.0No Hit
CTCTTGATGGTGATGCCGTTGACGTTCACGCCGCGCAGCAGCGCGACATG11.0No Hit
CAGGAGCCCTGGGTATTGGAGCTCTGCAGACTCTCTGCTCTTTCCCTCAC11.0No Hit
CCTCCGCGACGGCCCGGTCCGGATCTCTGCGGCGATCGTGGCCAGCTGGG11.0No Hit
CTTTGATTGGAGGCAATTTTGTCACAGCAGACACCAGGAAGTTCATGAGA11.0No Hit
TTTTTGGCCCGCGCGTGTTGGCCGACAATCCCTGCGGCATCAACGGAGAG11.0No Hit
GAGTATCCTAGATGATGCTGTACCAACAAAAATCATTCTATCTCCATGAT11.0No Hit
TTTCATGGCTTTTCCTATCTTCTTGACCCGATGCCTTATACCCCAGGTGA11.0No Hit
GAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCG11.0No Hit
GTGATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTGAGCCAGTCAGTGT11.0No Hit

[FAIL]Adapter Content

Adapter graph