FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003629524

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003629524
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences100
Sequences flagged as poor quality0
Sequence length100
%GC53

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATTTTGTTGGTTTTCGGAACTGAGGCCATGATTAAGAGGGACGGCCGGGG33.0No Hit
TTCCCCACGCAACAGATGCAGGTATTCGTCGATGATACCGGCACCCAGCG22.0No Hit
GGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACG22.0Clontech Universal Primer Mix Long (96% over 26bp)
GAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGG22.0Clontech Universal Primer Mix Long (96% over 26bp)
CTCCAGCATGGTGTGTCTGAAGTTCCCTGGAGGCTCCTGCATGGCAGCTC22.0No Hit
GGCCAGGGAGGTGCACTGGGGTGGTTCTGCCTTGCTGCTGGTACTGATAA22.0No Hit
GTACATGGGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTA22.0Clontech SMARTer II A Oligonucleotide (100% over 25bp)
GAAGAAGATCGAACATGACATGGTGATGAAAGCCAGCAGCAGCCTGCCCA22.0No Hit
AGATTAAAGTCCTCGCCATCTTCCAGCAGGCGGATCGCCACCTACCGCCG22.0No Hit
CCATTGCATTCCATTCCATTCGATTCCATTCGATTGCACTCGTGTTGACT22.0No Hit
TTCTAAGTCTGCGATTAAAGCTGGGAGCTGCTGGAGCTGCTCTTGCAGCT22.0No Hit
AACAACTGGTTCTTGCCAGCCTCTAGAGAAATCCCAGAACACTCAGCCCT22.0No Hit
CCTGTCAGCACCTTTTCCAGGTCTCTTCTGGGTGTCTGACCACCAGTGCT22.0No Hit
CTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGATAACGAACGAGACT22.0No Hit
GGAAGCAGTGGTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGC22.0Clontech Universal Primer Mix Long (96% over 25bp)
CAGTCTCAACAGATCACCCCCCAACTTGCCCTTCAAGTTCTACTTCAGTT22.0No Hit
ACGCAGAGTACTTTTTTTTTTTTTTGCGTTGATACCACTGCTTCCCATGT22.0Clontech Universal Primer Mix Long (95% over 21bp)
GTTCTGCAGGCTCCCCCACTTGGTCCCTGTGCTGGAGGGGAAGCAGAGAA11.0No Hit
GTGCAGAGTTCGATGAAATCTTCTTTTTCTGTTTTCACTTGGGGCAGTGT11.0No Hit
GAGTGGCGCTGGCACCCTTACACCAATACCGCACGCAAGAGAGTCTTCCT11.0No Hit
CTTGACTGGAGGCAATTTTCCTTCCCAAAAGAATATTTGGCAATATCTAG11.0No Hit
GTAAGTGTCTTTATCAGTAAGGTGAGTTTCTTGTAAGCAGCATATAGTTC11.0No Hit
ATAATTGCCACATTTGTTAACATTTTTCCATTTCTAAACCATCCTTAAAG11.0No Hit
GTTATGAGCAGCCGTTTTCTGCCCTACGACAACATCATCACAGACGCCGT11.0No Hit
GGGCGTGGGGGGGGCCCGCGAGGGGAACAATTAACACGAGAGCCGCCCCC11.0No Hit
GGCGCCAAGCGCCCGGCCGCGCGCCGGCCGGGCGCGACCCGCTCCGGGGA11.0No Hit
ATATACAGCACTGAAAAGAGAGATAAAGTCCCTGCCTGCATGCATTCTGG11.0No Hit
CGAAAACCCCGAGTACAAGTACAGCCTCGCCTTCATCGGCTACGGCAACG11.0No Hit
GATTTAATTTGGAAACTTTTTCTATATTAGGCCAGATAGTAACTATTTTA11.0No Hit
GGTATCAACCAGAGGAGATTTTGACCAGCTAGGACTGGTCAATTGACAAT11.0No Hit
GCCTCGAAAGAGTCCTGTATTGTTATTTTTCGTCACTACCTCCCCGGGTC11.0No Hit
TTCAAAGACATGAAATGTGGCCCGTATACTATATTTAAACTTAATTTGAG11.0No Hit
GGGTATGGAATTTTGTCAAGAAAAGAGCTGCGGCCGGGCGCGGTGGCCGA11.0No Hit
GTAGGCACACGCTGAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGACAT11.0No Hit
GTTAAGAGTGGTTTGAATAGTTTCATAAGAATCTCCTTTATAGATATGAG11.0No Hit
TGTCTGAACCTGCGGTTCCTCTCGTACTGAGCAGGATTACCATGGCAACA11.0No Hit
GCCCTTGTGATTCTGTCTACTTCTCTTTGTAGTTTCCCTTTTTCATGATT11.0No Hit
GATTTGGAGTCCTGCGGATAGAGCATTGTAGGGCAAGGAGCATTTTAGAA11.0No Hit
TGACAGAGGTCTGGCGCGCCACTTCGGCCGCGCTGATGCCGCGCAGGTCG11.0No Hit
CCGCCGCACTGGCCGCAGGGCCGGTCGTTGAACCGCGCGAGCGCCTCGCG11.0No Hit
GCGGCACGGCTACATCAAGGGCATCGTCAAGGACATCATCCACGACCCGG11.0No Hit
ATCGTGTACACTGCCGAATGACAGTGTTTGCAGAACCTCTAGCATGCATG11.0No Hit
CGGCCAGGTCGCCGAACAGGTCGGGGTCGCGGACGAAGGCCAGCGGGTCC11.0No Hit
CTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCCTGTACTCTGC11.0Clontech Universal Primer Mix Long (96% over 28bp)
GTCATCAAAGTAAGTAAAAATTAGATGCTACAGCTAGCTAACTGTATCCC11.0No Hit
CCTATAGCCTAGGTGGAACACAAAAACCACATGTCATTTTCAGTATACAA11.0No Hit
ACGCAAGTCCAGCTGTGATGCAATTCTTTCTCAAAAAGATGAAGACTATC11.0No Hit
ATGCTGGCGGTGGCGAAGGCCATCAGGTTCCGGATCTTGCTGCCTTCCTT11.0No Hit
CTTAAACCCAGGGGGCGGAGGTTGCAGTGAGCCGAGATTGTGCCTGTCTC11.0No Hit
AGTTACGCGACCCCCGAGCGGTCGGCGTCCCCCAACTTCTTAGAGGGACA11.0No Hit
GTGGAGAAGTGTGTGAAAATACAGCACGGACCCCGACATAATGAGAGGGC11.0No Hit
TCACGAATGGGGTTCAACGGGTTACCCGCGCCTGCCGGCGTAGGGTAGGC11.0No Hit
GGGCGTGGCCGGGGCCACCCCCGGAAACAAATAAAAAAACAACCCCAACC11.0No Hit
ACAGAAACCTCCCGTGGAGCAGAAGGGCAAAAGCTCGCTTGATCTTGATT11.0No Hit
CCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGCGTTGAT11.0Clontech Universal Primer Mix Long (96% over 26bp)
GAAAAGACCTGAGAAGACCTTAAGCTTTCACTGGTGACTGACCTAGGTCA11.0No Hit
GGACCTGTCAGGACGCGGCCATCGTGGGCTACAAGGACTCGCCCTCCGTC11.0No Hit
CAGGAATGTCGAGCTGGAGGATGAGACCTCGGTTCTTGATGCGGCAATGG11.0No Hit
GCTCCAATAGCGTATATTAAAGTTGCTGCAGTTAAAAAGCTCGTAGTTGG11.0No Hit
GAATCGAACCCTGATTCCCCGTCACCCGTGGTCACCATGGTAGGCACGGC11.0No Hit
CATCAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCA11.0No Hit
GTATCTGATCGTCTTCGAACCTCCGACTTTCGTTCTTGATTAATGAAAAC11.0No Hit
GGTCACCACGCTCGGGGGCGCCCTGCTCTGGCTCAGCGGACACGCGGGGA11.0No Hit
CCACTGCCCAGGTTTTTCCAGGAGCCTGAGTTCCCAGCTCAAAGGGGGCT11.0No Hit
ATACCACTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTA11.0Clontech Universal Primer Mix Long (96% over 26bp)
ACCCTGATGAAGGCTACAAAGTAAGCGCAAGTACCCACGTAAAGACGTTA11.0No Hit
ACAGAAACCTCCCGTGGAGCAGAGGGGCAAAAGCTCGCTTGATCTTGATT11.0No Hit
GTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTGTGTTTATAT11.0No Hit
CACTCAAAGAGATTCGGAAATTTGCCATGAAGGAGATGGGAACTCCAGAT11.0No Hit
GTTAAAAAGCTCGTAGTTGGATCTTGGGAGCGGGCGGGCGGTCCGCCGCG11.0No Hit
CTCCAGCAGTTTCTTCACAGCTTCAGAAGCCTCTGGTCCCAGCTCATTTA11.0No Hit
ATCAACGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTAATGTGGGT11.0No Hit
GAGCTTGGTGTCCTTGGACATGGCCGAGATGCGCGCAGGGGCCTCCCGCG11.0No Hit
GGCCGTGGGGGCCGTGAAGGCCCTGAAGGCCCTGCTGGGGGCCCTGACAG11.0No Hit
CTGCTTCCCATGTACTCTGCGTTGATACCACTGCTTCCCATGTACTCTGC11.0Clontech Universal Primer Mix Long (96% over 26bp)
GGGGTCGCGTAACTAGTTAGCATGCCAGAGTCTCGTTCGTTATCGGAATT11.0No Hit
CCTTTAATGACCCCCATCTCCCTGAAGGGCAGGTGCAGGCAGCTAGGTGA11.0No Hit
CCATTCCATTCCGGATGATTCCATTCCATTGCATTCCATTCCATTCCATT11.0No Hit
CCCCGGAACCCAAAGACTTTGGTTTCCCGGAAGCTGCCCGGCGGGTCATG11.0No Hit
GTATCAACGCAGAGTACATGGGGAATAATTGCAATCCCCGATCCCCATCA11.0No Hit
GGCCAGAGGCGTACAGGGATAGCACAGCCTGGATAGCAACGTACATGGCT11.0No Hit
TCAGATACCGTCGTAGTTCCGACCCTAAACGAACGCCGCCGCATCGCCGG11.0No Hit

[FAIL]Adapter Content

Adapter graph