FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003629536

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003629536
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences36
Sequences flagged as poor quality0
Sequence length100
%GC65

[OK]Per base sequence quality

Per base quality graph

[WARN]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ACGAAGAACAGGCCTGTGGCAGCTACGGTCACTTCCGGTGTTGCATTTCG38.333333333333332No Hit
CCGAAGGCGAATACACATCGCTCGGCGGCATCATGTACGAAGGCACCGAC38.333333333333332No Hit
ACCTGGTTTCAAGCTCAACAAGTATCCTGGAGGCCTCTTCATCAAGTGCG25.555555555555555No Hit
GAAGAACGGCACAAAGAACACAGGGACTGCGCGCACATTGGGGCCCAATC25.555555555555555No Hit
CTTCTTCGGCGTGCTGCTGTCGCCCGTGGTGGCGGCGGCGGCGATGGCGC25.555555555555555No Hit
GGAAGAGCGTCGTCGACATGCAGGCCGCCATCTACGAGATCGGCGCCGTC12.7777777777777777No Hit
CCGGCACGCCAGGCCGCATTGGGCGCGGGCCTGCCGCTGTCGGTCGGCTG12.7777777777777777No Hit
TCACCAAGAAGAGCCGCGCCACCAGCGTGGCTCGTGGCGCCAAGAGCGGC12.7777777777777777No Hit
CCCGCTGGCCGAACTGATGGCTGCTTGCTGCCGCTATCTCGAGTTCGCGC12.7777777777777777No Hit
CCCGCGCAGGCCGGCGGCCTGTGGCTGGCGCGCGTCAGGTCGGCGCTGGA12.7777777777777777No Hit
GGCGAAACCAGGGCTTGGCCGCGGATGCGCTCCAGCGTGGCCGTCATCAG12.7777777777777777No Hit
TCCACGCTCAACTCGTGCAGCATCTCGGCACGCAGTGTGCTGTCGGTAGC12.7777777777777777No Hit
GTCTCGTCCAAAAACGCGCCCGAACGGCTCGGGCGGGCGCGATTGTGGCG12.7777777777777777No Hit
GAAGGGGCTGATGCTGTCCATCCCGATCATGGCCGGCGCGCTGATGCGCT12.7777777777777777No Hit
GCCCCTATCTGTTCAGCAACACGCTGGCCCCGGCCATCGCCGGCGCGTCG12.7777777777777777No Hit
GCTCTGGGGCTCCGCAGCGGTTGGCGCCTGCGCCGGCGCCGACCTGGTCG12.7777777777777777No Hit
GCTGACCTACGGTTCGCCCGCGCCGGCCGATGTCGAGGGCGACCGTTTTG12.7777777777777777No Hit
CCTTCAATGCGTGCGCACCGGACCTCGTCAGAAACGCAGACTTTGCCAGC12.7777777777777777No Hit
TCCCGGTAGTGGTCGCCATGGCGGCCACACAGAACGTCGTCACGGCACTG12.7777777777777777No Hit
TCTGAATTGATGAGGCGGCGGGGCCGGGCGTCAGGCCCGGTGCGCGTCCA12.7777777777777777No Hit
GGTTGTCGTAAGTCGCGTCAGGCATGGGTGTCTCCAGTAAGCGGAAAAGG12.7777777777777777No Hit
GCCCTTGCCTTCGCGGAACAGGTCCGGCAGCAAGCCGTGGTAGACGACCG12.7777777777777777No Hit
TGCCGATACCGCCCGCGATCATGATCGGTTTGTGATAACCGCGCACAGTG12.7777777777777777No Hit
GGCCAGCGCGGCCACCACATGGGTGGGCGGCGTGTAGCGCCACTGGCCGG12.7777777777777777No Hit
CGAAGCGGGTGCCATCCACCCGGCCTTGCTCCAGGCCATGCGACGACACT12.7777777777777777No Hit
ATGGCGAGCGACGCGCTCGGGAATGAAGCGACCAGCAGCCCGCAGACTGC12.7777777777777777No Hit
GCACTGAACGTTGCCCGCGAATCGGGCGTTGAGCGCGTCGTCTATCTGTC12.7777777777777777No Hit
TGCTTATACCGACAAGGGCACCGGCGCCGGGCCGCACGACCTGGCTACGG12.7777777777777777No Hit
GGTGTCGGCGCATTGGGGCGTGCCTGACCCGGCTGCCGTGGAAGGCTCCT12.7777777777777777No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)