FastQCFastQC Report
Thu 1 Sep 2022
EGAF00003629668

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00003629668
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences152
Sequences flagged as poor quality0
Sequence length100
%GC43

[OK]Per base sequence quality

Per base quality graph

[FAIL]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[FAIL]Per base sequence content

Per base sequence content

[FAIL]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[OK]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
TCACATCGCAGAGTGGTGAAACCCTCAGCTATTGTTAATGGTAATGTTTG42.631578947368421No Hit
CTCATAGGGATAGTACAAGGAAGGGGTAGGCTATGTGTTTTGTCAGGGGG31.9736842105263157No Hit
GATCCAAACCCTATCAGGAGGTGTAAATGCTGTTGATTTCCCACCATAAG31.9736842105263157No Hit
AGTACTAATAGCCACATGTGGCTAGCGGCTACCATAATGGATCAGGCAGA31.9736842105263157No Hit
GTACTGACTTCATAAAAGCCATCTCAGAGCCATTGATACAAGTCAATCTT21.3157894736842104No Hit
GGTCTAGGGTGTAGCCTGAGAATAGGGGAAATCAGTGAATGAAGCCTCCT21.3157894736842104No Hit
GGACGAGGGAGCCTCAGCATTACTAGAATGGCGGCTGGAGTGACAAGAAG21.3157894736842104No Hit
CAAGAAATCTTTGCTCAGACCAATGTCCTAGAGAGTTTCCTCAATGTTTT21.3157894736842104No Hit
AAATGAAAAAATGAAATAATGAAATGAGGTGAAATTAAATGAGATGATGA21.3157894736842104No Hit
TCTTCGTTGTTGCGCACCTCGTCGGGCGTCCCATCGCCGATCTTCTTGCC21.3157894736842104No Hit
CCACTTGGCTGAAGGTGGTCCAGACGTGAAGCCAAGGATTCCAGGGCGCA21.3157894736842104No Hit
CCTGTAATCCCAGCACTTTGCGAGGCCAAGGCAGGCAGATCATTTGAGCC21.3157894736842104No Hit
CCATGCGCACCGCGCCGTGCGCACGGATGGCCTCGAAGCGTGCGAGCGCG21.3157894736842104No Hit
ACCTATCAGGCTGGAGTTGTTCACTTTAGCCTAATCAAGGAAATGGCTGC21.3157894736842104No Hit
GTCTGGTTCTCCATACCGTCACAATGACACTTTCGCAGTCAACATCACAG21.3157894736842104No Hit
GTAATGGCACCATTGACTTCCCCGAATTTTTGACTATGATGGCTAGAAAA21.3157894736842104No Hit
CAATTATATTACGAAGTTCCTGAAGTGAATTCTTCAGTTCCAGAAGTTCA21.3157894736842104No Hit
GTTCCATTCTCCCCATCACTTTCAGGTACACCAATCAGATGTAGATTTGG21.3157894736842104No Hit
ACTTAAAATACCAGAAACATCTATTTGCAACCTGGAGTTTAGGCTCAGCT10.6578947368421052No Hit
GGTTCAACGGGTTACCCGCGCCTGCCGGCGTAGGGTAGGCACACGCTGAG10.6578947368421052No Hit
TTCTATTGCAGATCTCTGCCTTCGGAGCAGTAACTTGAGATGATCCAATT10.6578947368421052No Hit
ACACCGACGGCATCGGCCTGGTCAACGACAACGTGCGCAACGCGGGCGTG10.6578947368421052No Hit
GATATACCCTAGGTATGCCTAGGATCCAAGTGTCAGAGGCAGAAAATGGG10.6578947368421052No Hit
GTCCTGCAGCTGCGGGCTCATGAAGCCCCAGTCGTCCAGCACCTGCTGCA10.6578947368421052No Hit
CTTTGAACACTCTAATTTTTTCAAAGTAAACGCTTCGGGCCCCGCGGGAC10.6578947368421052No Hit
AGGTAATAACAACATGCAAACCATGAGGCAGAAGAGAATTTCTGGTAGAC10.6578947368421052No Hit
CGCCGACGGCGTGCTGACCTATTTCGCGCTCGACGCCGCGCGCCTGCTGC10.6578947368421052No Hit
GTATCAACGCAGAGTACATGGGAAGCAGTGGTATCAACGCAGAGTACATG10.6578947368421052Clontech SMARTer II A Oligonucleotide (100% over 25bp)
CCAAACTCCACCATCTGGATTGTCAAAAGAAATTAGACTGTAAACATCCA10.6578947368421052No Hit
AGATTGGCTCTCTGAATTCTCATTTGGTATTTTATGATAAGGAAGAATTA10.6578947368421052No Hit
TTAGAAGACGACGAGAGGGTAAAACTGATTATTATGCTCGGAAACGCTTG10.6578947368421052No Hit
GAACTGATTAAAATGATCTGTTGTTACCTAAGACAAACTTTTTTTTTTTT10.6578947368421052No Hit
GTGTGTGTGGTTGTGTGTGTGGTGTGTGGGGTGTGTTGAGTGTGTATGAT10.6578947368421052No Hit
CATTAATTCCATTTGATGATGATTCCATTCAATTCCATTCGATGATGATT10.6578947368421052No Hit
ACCTTTGATCACCCAGAACTGGTGAAGCTTGGAAGTTGCAAACTTATCGA10.6578947368421052No Hit
ATCTTAATTTTGAACAAGTATGAGTAACATGATCAGCTTCGCTTTCTAGA10.6578947368421052No Hit
TATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGGTTT10.6578947368421052No Hit
CTCCCCAGCTATCTCCACCACACTGTCAACTTTACTCAATCTCTCCTAGC10.6578947368421052No Hit
CAGATTAGCGACGCGCTGAAACAGCGTCTGGAACTGTCTCTTATACACAT10.6578947368421052No Hit
GACTATTAAGAGAGGGAGAGTTAAGGGTTATCTAATTCCACTCGCTTACT10.6578947368421052No Hit
ACCATTTCCAGGTCAACAGGACTAGAGCGTTGATGGTTTTCAAACCCTGT10.6578947368421052No Hit
ATTCTATTCGATTCCATTTGATGATGATTCCATCTGATTCCATTTGATGA10.6578947368421052No Hit
GTATGAATTATCTTGTTCTGCAGTTGGTTGCTTTTTGATTGCTTATTTAA10.6578947368421052No Hit
GCTGCTGGCAGGCGACACAACGGAGGTGGCGCCATCCAGCCGCTGATAAA10.6578947368421052No Hit
GTGTAAACATAACTTTTATAGCACTAGGAAACCAAAACAATGTGTGACTC10.6578947368421052No Hit
GACTAATTTTAGCTTTAAAATTTTGTTTAAGGTAAGCTCGTTCTTTTAAG10.6578947368421052No Hit
GGATGCCAGCCTTAAAAACTTTAAAAAGTAGATTTACATGGGAGTAAAAC10.6578947368421052No Hit
GGGAATAAGACCAGAGATAAGACATTAAAGCATCACAGTACAAAGTAGTA10.6578947368421052No Hit
GTATTTCATGGTGTATATGTGCCACATTTTCTTAATCCAGTCTATCATTG10.6578947368421052No Hit
GATTCCATTCGATTCCATTCGTTGATGATTCCATTCAATTCCATTCGTTG10.6578947368421052No Hit
TTTAAGCAGGAGGTGTCAGAAAAGTTACCACAGGGATAACTGGCTTGTGG10.6578947368421052No Hit
GCCTTTGATAGCTTCCATGTGGTATTAAGCCTACAGGCATGCAGAGTGCA10.6578947368421052No Hit
GCTAAATAATGAGAACACATGGACACATAGAGGAGAACAACTAACACTGG10.6578947368421052No Hit
CCTTGGATGTGGTAGCCGTTTCTCAGGCTCCCTCTCCGGAATCGAACCCT10.6578947368421052No Hit
ATATAAATATAGCTTATTGGAATTATGTCTACGTATGTTATCTAATGAAA10.6578947368421052No Hit
GATATGCAGTGGTCCCAGCACCATTTGTTGAAAAAGGTGTTCTCTCCCCA10.6578947368421052No Hit
GCCTTGGCCTCACAAAATGCTGACATTATAGGCGTGAGTCACCACGCCTT10.6578947368421052No Hit
GAGCCAGTCAGTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCAC10.6578947368421052No Hit
GTTAAGGACTCAGGAAGGTTCTCAGAGAAAGGAAGATTTAAGATAGTCAG10.6578947368421052No Hit
TCGCCATGTTGCCCAGGCTTTCTTAACTCCTGGGTTCAAGCGATCCACTT10.6578947368421052No Hit
GACTATCCCCAAAAAATTAAAGAGGGGAAAATGCTTTCAATCAAAGCCAG10.6578947368421052No Hit
GCAGGCTGTGCCCGGGAGGGGGCCAAGAGCATGGGTGGCAGCTGAAAAGG10.6578947368421052No Hit
GGTGGGCGTGGCCTGCTCGATGGCGGCCGGTGCGCTGGCAGCGGTGCTCG10.6578947368421052No Hit
AATAGTAAATGAATATATCATCCATTACCAATAAATACATTTGCTGAAAA10.6578947368421052No Hit
ATGATAATTTGTATTTCTGTGGGATCAGTGGTGATATCCCCTTAATCATT10.6578947368421052No Hit
TTGTAATACTTGGTCAACTGATTTTTGAAAAGGGTGCCCAGACCATTCAA10.6578947368421052No Hit
CTCTACTAAAATACAAAAAAAATTAGCTGGGCATAGTGGCGGGTGCCTGT10.6578947368421052No Hit
CATAAAATCTGAACAGAGGAATTCTGAGAGACTCCTTTGTGATGTTTGTA10.6578947368421052No Hit
GATTCCATTCGATTCCATTCGTTGATGATAACATAAAATGACATACGTTG10.6578947368421052No Hit
ATTGTAATTAAAATACTTGATTAATCAAAAATAAGACAAGAAAAGATAAA10.6578947368421052No Hit
GCACCCCAAGCTTCTTGCCTCCTGGTCCTATCCAGATGGTAAAAGCGTCT10.6578947368421052No Hit
GGTTCCGGGGGGAGTATTGTTGCAAAACAGGAAAAAAAATGAAGTTTAGG10.6578947368421052No Hit
CAGTCTCACAAGCCCGGCTATCAGCCCGGATGACAGTGACGAGGAGAACT10.6578947368421052No Hit
GTATATAATTTCTTGTTGTTTTGTGATGCTTTGTCTTTGAACATTGACCA10.6578947368421052No Hit
ATATTGGGATGAATAATGCCAAATTCAAAGAACTGATGGTCAGAAAAGAA10.6578947368421052No Hit
CTCCAGTTCAACCTATTTAAGATATGAGGCATGTAGGTAAAGTTTCACTT10.6578947368421052No Hit
TAACAACTTCAATCATAGTAGCCAAAAACTGGGACTATAGCTCAAGGGTA10.6578947368421052No Hit
ATTTAAAATGGTTTAAAAAATCCATTTCCATTGGCACTACAGTTGGTAAC10.6578947368421052No Hit
CAATAAAAATGTTGTATTTATGTTTGGATTTAGATGCCTTTCAGTGGTCA10.6578947368421052No Hit
GAGCAGGATTACCATGGCAACAACACATCATCAGTAGGGTAAAACTAACC10.6578947368421052No Hit
ATTTTCAGCAGGGAAGTAAGAAGTTGCAGCTCAGTGCACATAAAGTTGAG10.6578947368421052No Hit
ATGTTGAACCATCCTTGCATCTCAGGGATAAATCCCACTTGGTCATGATG10.6578947368421052No Hit
CCTATGGGTAGTGGGATTGAACTAAGGATGGAGAGGAACAGAATTGACCA10.6578947368421052No Hit
ATGAGATACCATCTCATGCCAGTTAGAAGGGCAATCATTAAAAAGTCAGG10.6578947368421052No Hit
ACAAGCACGTGCCATCGTGCCCAGCTAATTTTTGTATTTTTAGTAGAGAC10.6578947368421052No Hit
TCGTGAGACAGGTTAGTTTTACCCTACTGATGATGTGTTGTTGCCATGGT10.6578947368421052No Hit
GCCGTTCTTAGTTGGTGGAGCGATTTGTCTGGTTAATTCCGATAACGAAC10.6578947368421052No Hit
GGTTCCGGGGGGAGTATGGGTGCAAACCAGAAAAATAAATGTAGTTAAGG10.6578947368421052No Hit
GTGCTTGGCTGAGGAGCCAATGGGGCGTAGCTACCAACAGTGGGGTTATT10.6578947368421052No Hit
CCTTATGTGTTGTAAGAATTGAATGAGGTCATAGCTCTAAAATCCTTGGG10.6578947368421052No Hit
GAATAGGTTGAGATCGTTTCGGCCCCAAGACCTCTAATCATTCGCTTTAC10.6578947368421052No Hit
GGTATATTCTTCATATAATCTATCATATTCTCGACTTTTTTCTTGAAACT10.6578947368421052No Hit
GAGGAGGACGCCGAGGACTTCTTCTTCACCGCCAGGACCTCCTTCTTCAG10.6578947368421052No Hit
ACGTGGGTGAGAAAGGTCCTGGTCCGCGCCAGAGCCCAGCGCGCCTCGTC10.6578947368421052No Hit
CTCTCGGGGCGAACCCATTCCAGGGCGCCCTGCCCTTCACAAAGAAAAGA10.6578947368421052No Hit
AAATAAAACAGCACATTTAATGAGGTCATATTCTTCTTAAACTTTTTTAG10.6578947368421052No Hit
CATTACGACCATTAAACAAAACAGAGTATCATATTTTATCAATATAAAAC10.6578947368421052No Hit
CCCATATACACCATTGATGGGAATGCAAAATGGTGCAGGTGCTTTGGAAA10.6578947368421052No Hit
GGGGTAGGTATTTAATTTCTTCTCAGTGGCCACTTCATTCTAAGTTATAA10.6578947368421052No Hit
GCACGATCTTGGCTCACTGCAAGCTCCACCTCCCGGCTTCAGGCCATTCT10.6578947368421052No Hit
ATTCGAGACCATTCGATGATTGCATTCAATTCATTCGATGACGATTCCGT10.6578947368421052No Hit
CCTACGGCTTAGAGTGTTAATGTTGACTGCTGATAGTTAAAAGATAAATC10.6578947368421052No Hit
CCCTGAGCAGAAGGGCAAAAGCTCGCTTGATCTTGATTTTCAGTACGAAT10.6578947368421052No Hit
ATACCTAGTCATGGGATTATTGGATCATATGGTAGCTCTAATTTTGGGGA10.6578947368421052No Hit
CTCGGAATGCTGGGGCACAAGAATGCTTGAACCTGGGAGGTGGAGGTTGC10.6578947368421052No Hit
GAGTAACCCGACCGCCGCTGGTCACCATGAACCACATTGTGCAAACCTTC10.6578947368421052No Hit
GGGTTTAGCCCAGGTGAAACTTCTGGAAGCTCCTGGTGAAAGGAGATTTT10.6578947368421052No Hit
GAGCCACTGCGCCTGGCCTTAAATCAGGATTTTTGATAAAATTATTAATC10.6578947368421052No Hit
GGCATACTCATCTTTTTCAGTGGGGGTGAATTCAGTGTAGTACAAGAGAT10.6578947368421052No Hit
TGATTATTCCATTCAAGTCCATTCGATGATTCCATTCGATTCCATTCGAT10.6578947368421052No Hit
GGTATCAACGCAGAGTACTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT10.6578947368421052No Hit
CGCGCACGAGCTGCAGGTCGAGACGCTGCGCATGACGCAGCTGGCCGAGC10.6578947368421052No Hit
ATGTTGCCCATGCTAGTCTTGAACTTTTGGCCTCAAGCAATCGATCCTCC10.6578947368421052No Hit
ACTTTGTGATGTGTGCATTCAACTCACCGAGTGCAACATTCCTCTTGATA10.6578947368421052No Hit
CATCCCTGCATCCCTAGGATGAAACCCACTTGATCATGGTGGATTATCTT10.6578947368421052No Hit
GATTGACATCTGGAGCCTCAGTACATCATCATGGGCTCTGCCAAGGAGAA10.6578947368421052No Hit
TAATAAACCCTGTGTATTATTTGTATTTTACAGATCATAGAAATATTTTT10.6578947368421052No Hit
ATCTGGGTCACATCCTCTTCCTGCTTTTGCTCCCAGTGGCTGCAGCTCAG10.6578947368421052No Hit
GCCTATGAAGGTTCTATATCATCTTTATAAACAAAACAATTCTTGTTTGG10.6578947368421052No Hit
GTAGTAGAAGTTAATTTTATTTTTTTCTACTGGCAAGAATAAATAAAAAT10.6578947368421052No Hit
TGTAATGACAATAATTAATTGCAGGCTTCTGATGGCTAACATTGATAAAA10.6578947368421052No Hit
AATCAATAGCTTACCAACCAAAAAGAGTCCAGGACCAGATGGATTCACAG10.6578947368421052No Hit
GTAAATATGTTGCTGTGGAGCTGAAGTCAGCCTTTGAGGAAACCGGCAAG10.6578947368421052No Hit
GGTTCCGGGGGGAGTAAGGTTTCAAAGCGTAAAAAAAAAATCAATTAACG10.6578947368421052No Hit
GATGTGTTGTTGCCATGGTAATCCTGCTCAGTACGAGAGGAACCGCAGGT10.6578947368421052No Hit
ATCCTTTACTGTTCTAATAAGTCAATAGCTTTCAGAATGTTAAATTAGAC10.6578947368421052No Hit
AAGTCATACTCTGGAGGGCTCCTAGTGCCAGGTGGTGTGGCAGTGGGGGA10.6578947368421052No Hit
GCTCACAGGTGCAGAAATACGTTCCATCCCTTGCATCTTTCCAGTTGATT10.6578947368421052No Hit
CTTGTAGGCAATCATCAGGCTGATGAGCCATGGTGGAATATTTGCTTCCT10.6578947368421052No Hit

[OK]Adapter Content

Adapter graph